Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Cco05g0783 ATGGCGTCGTCTCTGATTCTGAATCCTGTGGCGACTTCTGAGCGATCGCGTGATTCATCCAGAAAGAAGAAGAAGAAGAAAGCAACAAGGGAAGATGATCGTCAAGATCAAGATCACATCAAATGGAAATCACAAGCTCAGCATCAAGTTTACTCTTCGAAGCTGTTGCGCGCCTTGAGTCAGGTCAGGATCAGTTCTCCTGAATCGACACCAAACGAAACGCCGCGCCGTGGCCGAGCGGTGCGGGAGGCTTCCGATACGGCTCTAGCCTTTACGGCAAAAGGAAGAAGTAGGTGGAGCAGAGCAATCTTAACGAACCGTCTCAAGCTCAAGTTTCGTAATAAGCACAATCGGCAGAAGGCGCGTGTGACCGGAAACAGCCGCACGAAGAAACCTAGTGTTAGCGTTTTGCGGTTTAGAGGGAAGGGATCACCAACTGTACAGAGAAAAGTCCGGCTTCTCGGCCGGCTAGTTCCCGGCTGCCGGAAACAACCGCTGCCGGTGATTCTGGATGAAGTAACCGATTACATTCCGGCACTGGAGATGCAGATCCGTGTCATGAACGCCATAGTCAACTTGGTTTCAAGCTCTTCTTCATCTTCTTCTGGTATCGATTCTTCTACCTGA 627 50.56 MASSLILNPVATSERSRDSSRKKKKKKATREDDRQDQDHIKWKSQAQHQVYSSKLLRALSQVRISSPESTPNETPRRGRAVREASDTALAFTAKGRSRWSRAILTNRLKLKFRNKHNRQKARVTGNSRTKKPSVSVLRFRGKGSPTVQRKVRLLGRLVPGCRKQPLPVILDEVTDYIPALEMQIRVMNAIVNLVSSSSSSSSGIDSST 208
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
5 6521672 6522298 + CcPI632755_05g007830.1 Cco05g0783 178411
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Cco05g0783 208 MobiDBLite consensus disorder prediction 25 43 - -
Cco05g0783 208 CDD bHLH_AtIBH1_like 136 191 IPR044549 GO:0006355(InterPro)
Cco05g0783 208 MobiDBLite consensus disorder prediction 62 85 - -
Cco05g0783 208 PANTHER TRANSCRIPTION FACTOR IBH1-LIKE 1 39 194 IPR044660 GO:0006355(InterPro)
Cco05g0783 208 MobiDBLite consensus disorder prediction 1 46 - -
       

Duplication type information

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Cco02g1613 Cco-Chr2:28741804 Cco05g0783 Cco-Chr5:6521672 3.70E-27 dispersed
Cco03g1837 Cco-Chr3:33071465 Cco05g0783 Cco-Chr5:6521672 4.90E-30 dispersed
Cco05g0783 Cco-Chr5:6521672 Cco06g0447 Cco-Chr6:4945094 6.80E-56 wgd
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Cco05g0783 - - - 0.0