Gene search
Sequence information

Select | Gene | Cds | Cds_length | GC_content | Pep | Pep_length |
---|---|---|---|---|---|---|
Cco05g0785 | ATGGAAAAGAAATTTGAAGAGTCACTGATGGGGTTTGATAATTCTGCTGGATTTTACTCTCCGGCGGTGTTTTCCGATGAGTTTCCGGCGTCGAATTTTGATTCTTTTTCCAGTATTTTCGACATGCCATGTGATGACCATAAAGCTTCTGCTGCTGCTTCTTGTTCTTCTAATTCCTTTGACTTATTTAGTAGTGGAATTGAAATCCATGATTTTTACAATATTAATAATAATGATGATAATAATAATAATATTCCTTCTTCTTCTTCTTCTAATTTCTTCGATTTGCTTTCTACGGCGGCCCCGCCTCTTTCCTCGCCGGCCTCCACCGTGCCGGAGTCCTCCGAGGTTCTTAATGCTCCACCCTCTCCTAATTCTCCCTCTGTTTCTTCCTCCTCCAATGAAGCCACAGCTGCCATTCAAGAAGTTGACAAGATCAACAACAACACTGAGAAGCCTTCTTCTTCTAAAGTGTTGAAGCCAAAAAAGAAGAACCAGAAGAAGCAAAGAGAACCCAGATTTGCTTTCATGACAAAGAGTGATATTGATCATCTCGACGACGGTTACCGATGGCGAAAGTATGGTCAAAAAGCGGTGAAGAACAGCCCTTATCCCAGAAGCTATTATCGTTGTACGACGGCAGGGTGCGATGTGAAGAAGAGAGTAGAGCGATCGTCCAGCGACCATTCGATAGTTGTTACCACGTACGAAGGTCAACACACTCACCAAAGTCCGGTAATGCCGCGAGGAAGTATCAGAGTTTTACCAGAATCCACCAACAACGGTCTCATCGCTGATCACGACACCACCGCCACCGGACTTTTATTCCAACACAACACTCCCCAACCCTTCATGTGTAGCTCTCCGCCGCCACCATTTCTAACAATCAACTCGTCGGTGGTGGCGGGAAGTTCCCGTCCTGCTCCTCCTCCTACTTCCTTCCCGCCACCACCGTCTCAAGCTTCTTTGGTCCGAGACCATGGGCTTTTGCAGGACTTGGTGCCATTGCAAATGAGGAAGGAACCAAAAGATGAGCAAAATGGATGA | 1047 | 45.94 | MEKKFEESLMGFDNSAGFYSPAVFSDEFPASNFDSFSSIFDMPCDDHKASAAASCSSNSFDLFSSGIEIHDFYNINNNDDNNNNIPSSSSSNFFDLLSTAAPPLSSPASTVPESSEVLNAPPSPNSPSVSSSSNEATAAIQEVDKINNNTEKPSSSKVLKPKKKNQKKQREPRFAFMTKSDIDHLDDGYRWRKYGQKAVKNSPYPRSYYRCTTAGCDVKKRVERSSSDHSIVVTTYEGQHTHQSPVMPRGSIRVLPESTNNGLIADHDTTATGLLFQHNTPQPFMCSSPPPPFLTINSSVVAGSSRPAPPPTSFPPPPSQASLVRDHGLLQDLVPLQMRKEPKDEQNG | 348 |
Gff information

Chromosome | Start | End | Strand | Old_gene | Gene | Num |
---|---|---|---|---|---|---|
5 | 6559253 | 6560783 | + | CcPI632755_05g007850.1 | Cco05g0785 | 178413 |
Annotation information

Select | Seq ID | Length | Analysis | Description | Start | End | IPR | GO |
---|---|---|---|---|---|---|---|---|
Cco05g0785 | 348 | Gene3D | WRKY domain | 170 | 246 | IPR036576 | GO:0003700(InterPro)|GO:0006355(InterPro)|GO:0043565(InterPro) | |
Cco05g0785 | 348 | MobiDBLite | consensus disorder prediction | 104 | 155 | - | - | |
Cco05g0785 | 348 | PANTHER | WRKY TRANSCRIPTION FACTOR PROTEIN 1-RELATED | 121 | 256 | IPR044810 | GO:0003700(InterPro) | |
Cco05g0785 | 348 | FunFam | WRKY transcription factor 57 | 171 | 245 | - | - | |
Cco05g0785 | 348 | MobiDBLite | consensus disorder prediction | 104 | 174 | - | - | |
Cco05g0785 | 348 | MobiDBLite | consensus disorder prediction | 298 | 323 | - | - | |
Cco05g0785 | 348 | Pfam | WRKY DNA -binding domain | 186 | 243 | IPR003657 | GO:0003700(InterPro)|GO:0006355(InterPro)|GO:0043565(InterPro) | |
Cco05g0785 | 348 | ProSiteProfiles | WRKY domain profile. | 180 | 245 | IPR003657 | GO:0003700(InterPro)|GO:0006355(InterPro)|GO:0043565(InterPro) | |
Cco05g0785 | 348 | SUPERFAMILY | WRKY DNA-binding domain | 177 | 245 | IPR036576 | GO:0003700(InterPro)|GO:0006355(InterPro)|GO:0043565(InterPro) | |
Cco05g0785 | 348 | SMART | WRKY_cls | 185 | 244 | IPR003657 | GO:0003700(InterPro)|GO:0006355(InterPro)|GO:0043565(InterPro) |
Duplication type information

Select | Gene1 | Location1 | Gene2 | Location2 | E-value | Duplicated-type |
---|---|---|---|---|---|---|
Cco05g0785 | Cco-Chr5:6559253 | Cco08g1183 | Cco-Chr8:23597915 | 1.70E-35 | dispersed | |
Cco05g0785 | Cco-Chr5:6559253 | Cco06g0446 | Cco-Chr6:4905637 | 1.40E-45 | wgd |
Transcription factors information

Select | Gene | Hmm_acc | Hmm_name | Score | E-value | Regulatory Factors | Family |
---|---|---|---|---|---|---|---|
59255 | PF03106 | WRKY | 6.10E-26 | CL0274 | Cco | TF |
Pathway information

Select | Query | KO | Definition | Second KO | KEGG Genes ID | GHOSTX Score |
---|---|---|---|---|---|---|
Cco05g0785 | - | - | - | 0.0 |