Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Cco05g0785 ATGGAAAAGAAATTTGAAGAGTCACTGATGGGGTTTGATAATTCTGCTGGATTTTACTCTCCGGCGGTGTTTTCCGATGAGTTTCCGGCGTCGAATTTTGATTCTTTTTCCAGTATTTTCGACATGCCATGTGATGACCATAAAGCTTCTGCTGCTGCTTCTTGTTCTTCTAATTCCTTTGACTTATTTAGTAGTGGAATTGAAATCCATGATTTTTACAATATTAATAATAATGATGATAATAATAATAATATTCCTTCTTCTTCTTCTTCTAATTTCTTCGATTTGCTTTCTACGGCGGCCCCGCCTCTTTCCTCGCCGGCCTCCACCGTGCCGGAGTCCTCCGAGGTTCTTAATGCTCCACCCTCTCCTAATTCTCCCTCTGTTTCTTCCTCCTCCAATGAAGCCACAGCTGCCATTCAAGAAGTTGACAAGATCAACAACAACACTGAGAAGCCTTCTTCTTCTAAAGTGTTGAAGCCAAAAAAGAAGAACCAGAAGAAGCAAAGAGAACCCAGATTTGCTTTCATGACAAAGAGTGATATTGATCATCTCGACGACGGTTACCGATGGCGAAAGTATGGTCAAAAAGCGGTGAAGAACAGCCCTTATCCCAGAAGCTATTATCGTTGTACGACGGCAGGGTGCGATGTGAAGAAGAGAGTAGAGCGATCGTCCAGCGACCATTCGATAGTTGTTACCACGTACGAAGGTCAACACACTCACCAAAGTCCGGTAATGCCGCGAGGAAGTATCAGAGTTTTACCAGAATCCACCAACAACGGTCTCATCGCTGATCACGACACCACCGCCACCGGACTTTTATTCCAACACAACACTCCCCAACCCTTCATGTGTAGCTCTCCGCCGCCACCATTTCTAACAATCAACTCGTCGGTGGTGGCGGGAAGTTCCCGTCCTGCTCCTCCTCCTACTTCCTTCCCGCCACCACCGTCTCAAGCTTCTTTGGTCCGAGACCATGGGCTTTTGCAGGACTTGGTGCCATTGCAAATGAGGAAGGAACCAAAAGATGAGCAAAATGGATGA 1047 45.94 MEKKFEESLMGFDNSAGFYSPAVFSDEFPASNFDSFSSIFDMPCDDHKASAAASCSSNSFDLFSSGIEIHDFYNINNNDDNNNNIPSSSSSNFFDLLSTAAPPLSSPASTVPESSEVLNAPPSPNSPSVSSSSNEATAAIQEVDKINNNTEKPSSSKVLKPKKKNQKKQREPRFAFMTKSDIDHLDDGYRWRKYGQKAVKNSPYPRSYYRCTTAGCDVKKRVERSSSDHSIVVTTYEGQHTHQSPVMPRGSIRVLPESTNNGLIADHDTTATGLLFQHNTPQPFMCSSPPPPFLTINSSVVAGSSRPAPPPTSFPPPPSQASLVRDHGLLQDLVPLQMRKEPKDEQNG 348
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
5 6559253 6560783 + CcPI632755_05g007850.1 Cco05g0785 178413
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Cco05g0785 348 Gene3D WRKY domain 170 246 IPR036576 GO:0003700(InterPro)|GO:0006355(InterPro)|GO:0043565(InterPro)
Cco05g0785 348 MobiDBLite consensus disorder prediction 104 155 - -
Cco05g0785 348 PANTHER WRKY TRANSCRIPTION FACTOR PROTEIN 1-RELATED 121 256 IPR044810 GO:0003700(InterPro)
Cco05g0785 348 FunFam WRKY transcription factor 57 171 245 - -
Cco05g0785 348 MobiDBLite consensus disorder prediction 104 174 - -
Cco05g0785 348 MobiDBLite consensus disorder prediction 298 323 - -
Cco05g0785 348 Pfam WRKY DNA -binding domain 186 243 IPR003657 GO:0003700(InterPro)|GO:0006355(InterPro)|GO:0043565(InterPro)
Cco05g0785 348 ProSiteProfiles WRKY domain profile. 180 245 IPR003657 GO:0003700(InterPro)|GO:0006355(InterPro)|GO:0043565(InterPro)
Cco05g0785 348 SUPERFAMILY WRKY DNA-binding domain 177 245 IPR036576 GO:0003700(InterPro)|GO:0006355(InterPro)|GO:0043565(InterPro)
Cco05g0785 348 SMART WRKY_cls 185 244 IPR003657 GO:0003700(InterPro)|GO:0006355(InterPro)|GO:0043565(InterPro)
       

Duplication type information

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Cco05g0785 Cco-Chr5:6559253 Cco08g1183 Cco-Chr8:23597915 1.70E-35 dispersed
Cco05g0785 Cco-Chr5:6559253 Cco06g0446 Cco-Chr6:4905637 1.40E-45 wgd
       

Transcription factors information

Select Gene Hmm_acc Hmm_name Score E-value Regulatory Factors Family
59255 PF03106 WRKY 6.10E-26 CL0274 Cco TF
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Cco05g0785 - - - 0.0