Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Cco05g0790 ATGCATATTTTGCTAGCGAAATTCAAGGAGGAAATCACACAGAAACAAATTGACGATATCATTAATAAATATGCTAATCTTGTCAATCTCATTGAGTCTATGAAGGTTTTTCAATGGGGAAGGGATGTTAGCATTGAAGATCTACACCAAGGTTACACTCATATCTTTGAATCCACCTTTGAGAGTAAGGAAGGCATCGCAGAGTATATAGCTCATCCAGCACATATCGAATTTGCAAACTTGTTCCTTCCTACTTTAGAAAAAGTTGTTGCTGTCGACTACATACCTACTGAATTGCCGAAAAAGTTGTCAACTAATGACGACAACAATGATAGCGACAATGGCGAGGACGATTAA 357 37.54 MHILLAKFKEEITQKQIDDIINKYANLVNLIESMKVFQWGRDVSIEDLHQGYTHIFESTFESKEGIAEYIAHPAHIEFANLFLPTLEKVVAVDYIPTELPKKLSTNDDNNDSDNGEDD 118
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
5 6601355 6603048 + CcPI632755_05g007900.1 Cco05g0790 178418

Annotation

Select Seq ID Length Analysis Description Start End IPR GO
Cco05g0790 118 PANTHER - 2 98 IPR044662 GO:0009865(PANTHER)
Cco05g0790 118 Gene3D - 1 99 - -
Cco05g0790 118 FunFam Stress-response A/B barrel domain-containing protein HS1 1 101 - -
Cco05g0790 118 SMART Dabb_2 2 96 IPR013097 -
Cco05g0790 118 Pfam Stress responsive A/B Barrel Domain 2 95 IPR013097 -
Cco05g0790 118 SUPERFAMILY Dimeric alpha+beta barrel 1 97 IPR011008 -
Cco05g0790 118 ProSiteProfiles Stress-response A/B barrel domain profile. 1 94 IPR013097 -
       

Pathway

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Cco05g0790 - - - - 0.0
       

Dupl-types

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Cco05g0790 Cco-Chr5:6601355 Cco05g0797 Cco-Chr5:6673800 3.10E-37 proximal
       

Deco-Alignment

Select Vvi1 Blo1 Blo2 Bda1 Bda2 Bpe1 Bpe2 Bma1 Bma2 Cmo1 Cmo2 Cma1 Cma2 Car1 Car2 Sed1 Cpe1 Cpe2 Bhi1 Tan1 Cmetu1 Lac1 Hepe1 Mch1 Lcy1 Cla1 Cam1 Cec1 Cco1 Clacu1 Cmu1 Cre1 Cone1 Cone2 Cone3 Cone4 Lsi1 Csa1 Chy1 Cme1 Blo3 Blo4 Bda3 Bda4 Bpe3 Bpe4 Bma3 Bma4 Sed2 Cmo3 Cmo4 Cma3 Cma4 Car3 Car4 Cpe3 Cpe4 Bhi2 Tan2 Cmetu2 Lac2 Hepe2 Mch2 Lcy2 Cla2 Cam2 Cec2 Cco2 Clacu2 Cmu2 Cre2 Lsi2 Csa2 Chy2 Cme2
Vvi5g215 . . . . . . . . . . . Cma14g01573 . Car14g01386 . . Cpe03g01314 Bhi01g01102 . . . . . . . . . . . . . . . . . Lsi05g01409 . . Cme06g00753 . . . . . . . . . . Cmo14g01606 . . . . . . . . . . . . . Cla05g00718 Cam05g0787 Cec05g0792 Cco05g0790 Clacu05g0777 Cmu05g0741 Cre05g0817 . Csa03g01537 Chy06g00774 .
       

Syn-Orthogroups

Select Orthogroup Bda Bhi Blo Bma Bpe Cam Car Cco Cec Chy Cla Clacu Cma Cme Cmetu Cmo Cmu Cone Cpe Cre Csa HCH Hepe Lac Lcy Lsi Mch Sed Tan Vvi Total
OG0003452 1 2 1 1 1 3 1 2 3 1 3 3 1 1 1 1 2 0 1 2 1 1 1 1 1 2 1 2 1 5 47