Gene search
Sequence information
| Select | Gene | Cds | Cds_length | GC_content | Pep | Pep_length |
|---|---|---|---|---|---|---|
| Cco05g0806 | ATGGCTCTCGACGCCGAAGCTGCACCAGCGGCGGAGTTGGCGCTTGCTGATACCGACATCAACTGGAACAGGTTGGACAAGACAAAGTTTCATATAATTGGGGCAATACTCTTTACGGCTCAGTCAGCCTTGTTACATCCAACAGCGGTTGTAAAAACTAGAATGCAAGTTGCTGGGTCTGGTCTATCTCACATGCGTGGACTGTCAGTTTTCTGGAATATATTGAAGTCTGATGGAATCTCTGGCTTGTATAGAGGTTTTGGCACTTCAGCGATTGGATCATTACCTGGTAGAGTATTGGCTTTAACATCACTAGAAGTATCAAAAGACATGATGTTGAAATATACTGGAAATTTGGAGATGTATGAAGCAACACGTGTTGGTCTTGCTAATGGAGTGGCAGGCATGATCTCGAATTTAGTTTCATGCATATACTATGTGCCATTGGACGTGACTTGCCAGAGGCTGATGGTTCAAGGGCTTCCTGGAACCACCTTCTGCAATGGCCCACTTGATGTTGTCAGAAAAGTGATGAAGGCTGAAGGATTTCGTGGTTTATATAGGGGTTTTGGATTAACGGCTGTAACTCAGTCCCCAGCATCTGCTCTCTGGTGGGGTGTTTATGGTGCTGCTCAGCATATTATCTGGAGGAGCTTAGGATATCAAGGTAGTATGGAGAAGAAACCTTCTCACATGGAGATGGTGACGGTTCAGGCCACAGCAGGAATGGTGGCAGGTGCTTGTTCCTCTGTTATTACAACTCCTGTAGACACAGTAAAGACGCGACTTCAGGTCATCGATAACTATGGAATTGGAAGACCATCCGTGCTCAAGACTTCAAGAGCACTTCTCAAGGAAGATGGATGGTTGGGATTTTATAGAGGCTTTGGACCTCGGTTTTTGAATATGTCACTTTATGGAACCACGATGATAGTCACTTATGAACTGATCAAGAGACTTTCCTTAAAGGACGTCGTGGCATCTTGA | 987 | 45.09 | MALDAEAAPAAELALADTDINWNRLDKTKFHIIGAILFTAQSALLHPTAVVKTRMQVAGSGLSHMRGLSVFWNILKSDGISGLYRGFGTSAIGSLPGRVLALTSLEVSKDMMLKYTGNLEMYEATRVGLANGVAGMISNLVSCIYYVPLDVTCQRLMVQGLPGTTFCNGPLDVVRKVMKAEGFRGLYRGFGLTAVTQSPASALWWGVYGAAQHIIWRSLGYQGSMEKKPSHMEMVTVQATAGMVAGACSSVITTPVDTVKTRLQVIDNYGIGRPSVLKTSRALLKEDGWLGFYRGFGPRFLNMSLYGTTMIVTYELIKRLSLKDVVAS | 328 |
Gff information
| Chromosome | Start | End | Strand | Old_gene | Gene | Num |
|---|---|---|---|---|---|---|
| 5 | 6784783 | 6788010 | + | CcPI632755_05g008060.1 | Cco05g0806 | 178434 |
Annotation information
| Select | Seq ID | Length | Analysis | Description | Start | End | IPR | GO |
|---|---|---|---|---|---|---|---|---|
| Cco05g0806 | 328 | Pfam | Mitochondrial carrier protein | 237 | 322 | IPR018108 | - | |
| Cco05g0806 | 328 | Pfam | Mitochondrial carrier protein | 32 | 115 | IPR018108 | - | |
| Cco05g0806 | 328 | Pfam | Mitochondrial carrier protein | 130 | 216 | IPR018108 | - | |
| Cco05g0806 | 328 | ProSiteProfiles | Solute carrier (Solcar) repeat profile. | 26 | 111 | IPR018108 | - | |
| Cco05g0806 | 328 | SUPERFAMILY | Mitochondrial carrier | 23 | 316 | IPR023395 | - | |
| Cco05g0806 | 328 | PANTHER | MITOCHONDRIAL SUBSTRATE CARRIER FAMILY PROTEIN J | 7 | 324 | - | - | |
| Cco05g0806 | 328 | ProSiteProfiles | Solute carrier (Solcar) repeat profile. | 126 | 214 | IPR018108 | - | |
| Cco05g0806 | 328 | Gene3D | Mitochondrial carrier domain | 121 | 325 | IPR023395 | - | |
| Cco05g0806 | 328 | ProSiteProfiles | Solute carrier (Solcar) repeat profile. | 233 | 320 | IPR018108 | - |
Duplication type information
| Select | Gene1 | Location1 | Gene2 | Location2 | E-value | Duplicated-type |
|---|---|---|---|---|---|---|
| Cco05g0806 | Cco-Chr5:6784783 | Cco11g0501 | Cco-Chr11:5245461 | 5.80E-86 | dispersed | |
| Cco05g0806 | Cco-Chr5:6784783 | Cco09g0080 | Cco-Chr9:732778 | 1.40E-63 | transposed |
Pathway information
| Select | Query | KO | Definition | Second KO | KEGG Genes ID | GHOSTX Score |
|---|---|---|---|---|---|---|
| Cco05g0806 | K15121 | - | csv:101213375 | 612.838 |