Gene search
Sequence information

Select | Gene | Cds | Cds_length | GC_content | Pep | Pep_length |
---|---|---|---|---|---|---|
Cco05g0821 | ATGAGAGTTGGGAAGTATGAGTTGGGGAAAACTCTTGGAGAAGGCAATTTCGGCAAGGTGAAGTTGGCCGCCGATATCCGTACTGGCCGTCGTTACGCCGTCAAGATCCTCGATAAGACCAAGATTCTCCATCTCAACTTCTCCGATCAGATTAAACGTGAAATAAGTACTCTCAAGCTCCTCAGGCATCCGAATGTTGTAAGACTTTACGAGGTTTTAGCTAGTAAGACGAAGATTTATATGGTTCTGGAGTGCGCCTCTGGTGGAGAATTGTTTGATAGAATTGAATCGAAGGGTAAAATGGATGAAGTTGATGGTCGGAGGCTCTTCCAGCAGCTTATTGATGGTCTTAGCTACTGCCATGACAAAGGAGTTTACCACAGGGATCTCAAGTTGGAAAACGTGCTTGTTGATGCTAAGGGAAATATTAAGATTTCTGATTTTGGCCTCAGTGCTTTACCGCAGAATTGCAGGGAAGATGGTTTGCTGCACACAACCTGTGGAAGTCCCAACTATGTTGCACCAGAGGTTCTTGCTAATAGAGGATACAATGGAGCCGCCTCTGATATATGGTCATGTGGGGTTATCTTGTATGTTATTCTTACGGCTTTTCTTCCTTTTGACGAGACCAATCTGGCTTTACTTTATAAAAAGACTTTGAGGGGGGATTTTCAGATACCCAAATGGTTATCAGCAGGTGCCAGAAATTTGATAAGGAGAACTCTTGACCCCAATCCCAATACTCGGATTACCATGGCAGGAATTAAAGAGAATGAGTGGTTCAAGACTGACTACCATCCTGCTTCTCCTGGTTATGACGATGATGAGGAGGAGGGTTCACTTACTGATCAGGATGATGCCATCTCAACGCCTGATGAGCCATCTGACGTTGAAAACAGCCCAGAATCTCCTTCTATTATCAATGCGTTTGAGTTAATTGGGATGTCTTCAAGTTTGGATTTGTCTGGCTTCTTTGAGCAAGAGGATGTCTCCGAGAGGAAGATCAGATTTACATCCAACCGTTCTGCCAAAGACTTGCTTGAGAGAATCGAGGTTATTGCAACGGATATGGGATTTCGAGTTCAAAAGAAAAGTGGAAAGTTGAAATTGATTCAAGAGATAAGAAGTCAAAAAAGCCTAAGTAATCTATCATTTGTAGCCGAGGTCTTTGAGATAAGCCCATTGCTTCACGTAGTTGAACTGAAAAAATCTTTTGGAGATTCATCAGCTTATAGACAGTTGTGTGAAAGGCTGTCAAATGATTTGGGCACAAACCCAGAGCTGGAACGGCAAAATTCAAGCTCATTCGCATTAAACACTACATGCTAG | 1329 | 42.89 | MRVGKYELGKTLGEGNFGKVKLAADIRTGRRYAVKILDKTKILHLNFSDQIKREISTLKLLRHPNVVRLYEVLASKTKIYMVLECASGGELFDRIESKGKMDEVDGRRLFQQLIDGLSYCHDKGVYHRDLKLENVLVDAKGNIKISDFGLSALPQNCREDGLLHTTCGSPNYVAPEVLANRGYNGAASDIWSCGVILYVILTAFLPFDETNLALLYKKTLRGDFQIPKWLSAGARNLIRRTLDPNPNTRITMAGIKENEWFKTDYHPASPGYDDDEEEGSLTDQDDAISTPDEPSDVENSPESPSIINAFELIGMSSSLDLSGFFEQEDVSERKIRFTSNRSAKDLLERIEVIATDMGFRVQKKSGKLKLIQEIRSQKSLSNLSFVAEVFEISPLLHVVELKKSFGDSSAYRQLCERLSNDLGTNPELERQNSSSFALNTTC | 442 |
Gff information

Chromosome | Start | End | Strand | Old_gene | Gene | Num |
---|---|---|---|---|---|---|
5 | 6884682 | 6887389 | + | CcPI632755_05g008210.1 | Cco05g0821 | 178449 |
Annotation information

Select | Seq ID | Length | Analysis | Description | Start | End | IPR | GO |
---|---|---|---|---|---|---|---|---|
Cco05g0821 | 442 | ProSitePatterns | Serine/Threonine protein kinases active-site signature. | 125 | 137 | IPR008271 | GO:0004672(InterPro)|GO:0006468(InterPro) | |
Cco05g0821 | 442 | ProSiteProfiles | Protein kinase domain profile. | 6 | 261 | IPR000719 | GO:0004672(InterPro)|GO:0005524(InterPro)|GO:0006468(InterPro) | |
Cco05g0821 | 442 | FunFam | Non-specific serine/threonine protein kinase | 1 | 304 | - | - | |
Cco05g0821 | 442 | Gene3D | Transferase(Phosphotransferase) domain 1 | 2 | 305 | - | - | |
Cco05g0821 | 442 | Pfam | Protein kinase domain | 6 | 261 | IPR000719 | GO:0004672(InterPro)|GO:0005524(InterPro)|GO:0006468(InterPro) | |
Cco05g0821 | 442 | SUPERFAMILY | Protein kinase-like (PK-like) | 3 | 262 | IPR011009 | - | |
Cco05g0821 | 442 | MobiDBLite | consensus disorder prediction | 284 | 302 | - | - | |
Cco05g0821 | 442 | SMART | serkin_6 | 6 | 261 | IPR000719 | GO:0004672(InterPro)|GO:0005524(InterPro)|GO:0006468(InterPro) | |
Cco05g0821 | 442 | FunFam | Non-specific serine/threonine protein kinase | 304 | 426 | - | - | |
Cco05g0821 | 442 | ProSiteProfiles | NAF domain profile. | 302 | 326 | IPR018451 | GO:0007165(InterPro) | |
Cco05g0821 | 442 | Pfam | NAF domain | 304 | 363 | IPR004041 | GO:0007165(InterPro) | |
Cco05g0821 | 442 | Gene3D | Kinase associated domain 1, KA1 | 306 | 424 | - | - | |
Cco05g0821 | 442 | CDD | CIPK_C | 308 | 419 | - | - | |
Cco05g0821 | 442 | ProSitePatterns | Protein kinases ATP-binding region signature. | 12 | 35 | IPR017441 | GO:0005524(InterPro) | |
Cco05g0821 | 442 | FunFam | Non-specific serine/threonine protein kinase | 1 | 85 | - | - | |
Cco05g0821 | 442 | MobiDBLite | consensus disorder prediction | 266 | 302 | - | - | |
Cco05g0821 | 442 | PANTHER | CALCIUM/CALMODULIN-DEPENDENT PROTEIN KINASE KINASE-RELATED | 4 | 412 | - | GO:0004674(PANTHER)|GO:0006468(PANTHER)|GO:0007165(PANTHER) |
Duplication type information

Select | Gene1 | Location1 | Gene2 | Location2 | E-value | Duplicated-type |
---|---|---|---|---|---|---|
Cco05g0821 | Cco-Chr5:6884682 | Cco06g0423 | Cco-Chr6:4620896 | 1.10E-127 | dispersed | |
Cco05g0821 | Cco-Chr5:6884682 | Cco06g0422 | Cco-Chr6:4602408 | 7.70E-158 | wgd |
Transcription factors information

Select | Gene | Hmm_acc | Hmm_name | Score | E-value | Regulatory Factors | Family |
---|---|---|---|---|---|---|---|
86832 | PF00069 | Pkinase | 2.20E-70 | CL0016 | Cco | PK |
Pathway information

Select | Query | KO | Definition | Second KO | KEGG Genes ID | GHOSTX Score |
---|---|---|---|---|---|---|
Cco05g0821 | K07198 | - | csv:101205987 | 850.121 |