Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Cco05g0821 ATGAGAGTTGGGAAGTATGAGTTGGGGAAAACTCTTGGAGAAGGCAATTTCGGCAAGGTGAAGTTGGCCGCCGATATCCGTACTGGCCGTCGTTACGCCGTCAAGATCCTCGATAAGACCAAGATTCTCCATCTCAACTTCTCCGATCAGATTAAACGTGAAATAAGTACTCTCAAGCTCCTCAGGCATCCGAATGTTGTAAGACTTTACGAGGTTTTAGCTAGTAAGACGAAGATTTATATGGTTCTGGAGTGCGCCTCTGGTGGAGAATTGTTTGATAGAATTGAATCGAAGGGTAAAATGGATGAAGTTGATGGTCGGAGGCTCTTCCAGCAGCTTATTGATGGTCTTAGCTACTGCCATGACAAAGGAGTTTACCACAGGGATCTCAAGTTGGAAAACGTGCTTGTTGATGCTAAGGGAAATATTAAGATTTCTGATTTTGGCCTCAGTGCTTTACCGCAGAATTGCAGGGAAGATGGTTTGCTGCACACAACCTGTGGAAGTCCCAACTATGTTGCACCAGAGGTTCTTGCTAATAGAGGATACAATGGAGCCGCCTCTGATATATGGTCATGTGGGGTTATCTTGTATGTTATTCTTACGGCTTTTCTTCCTTTTGACGAGACCAATCTGGCTTTACTTTATAAAAAGACTTTGAGGGGGGATTTTCAGATACCCAAATGGTTATCAGCAGGTGCCAGAAATTTGATAAGGAGAACTCTTGACCCCAATCCCAATACTCGGATTACCATGGCAGGAATTAAAGAGAATGAGTGGTTCAAGACTGACTACCATCCTGCTTCTCCTGGTTATGACGATGATGAGGAGGAGGGTTCACTTACTGATCAGGATGATGCCATCTCAACGCCTGATGAGCCATCTGACGTTGAAAACAGCCCAGAATCTCCTTCTATTATCAATGCGTTTGAGTTAATTGGGATGTCTTCAAGTTTGGATTTGTCTGGCTTCTTTGAGCAAGAGGATGTCTCCGAGAGGAAGATCAGATTTACATCCAACCGTTCTGCCAAAGACTTGCTTGAGAGAATCGAGGTTATTGCAACGGATATGGGATTTCGAGTTCAAAAGAAAAGTGGAAAGTTGAAATTGATTCAAGAGATAAGAAGTCAAAAAAGCCTAAGTAATCTATCATTTGTAGCCGAGGTCTTTGAGATAAGCCCATTGCTTCACGTAGTTGAACTGAAAAAATCTTTTGGAGATTCATCAGCTTATAGACAGTTGTGTGAAAGGCTGTCAAATGATTTGGGCACAAACCCAGAGCTGGAACGGCAAAATTCAAGCTCATTCGCATTAAACACTACATGCTAG 1329 42.89 MRVGKYELGKTLGEGNFGKVKLAADIRTGRRYAVKILDKTKILHLNFSDQIKREISTLKLLRHPNVVRLYEVLASKTKIYMVLECASGGELFDRIESKGKMDEVDGRRLFQQLIDGLSYCHDKGVYHRDLKLENVLVDAKGNIKISDFGLSALPQNCREDGLLHTTCGSPNYVAPEVLANRGYNGAASDIWSCGVILYVILTAFLPFDETNLALLYKKTLRGDFQIPKWLSAGARNLIRRTLDPNPNTRITMAGIKENEWFKTDYHPASPGYDDDEEEGSLTDQDDAISTPDEPSDVENSPESPSIINAFELIGMSSSLDLSGFFEQEDVSERKIRFTSNRSAKDLLERIEVIATDMGFRVQKKSGKLKLIQEIRSQKSLSNLSFVAEVFEISPLLHVVELKKSFGDSSAYRQLCERLSNDLGTNPELERQNSSSFALNTTC 442
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
5 6884682 6887389 + CcPI632755_05g008210.1 Cco05g0821 178449
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Cco05g0821 442 ProSitePatterns Serine/Threonine protein kinases active-site signature. 125 137 IPR008271 GO:0004672(InterPro)|GO:0006468(InterPro)
Cco05g0821 442 ProSiteProfiles Protein kinase domain profile. 6 261 IPR000719 GO:0004672(InterPro)|GO:0005524(InterPro)|GO:0006468(InterPro)
Cco05g0821 442 FunFam Non-specific serine/threonine protein kinase 1 304 - -
Cco05g0821 442 Gene3D Transferase(Phosphotransferase) domain 1 2 305 - -
Cco05g0821 442 Pfam Protein kinase domain 6 261 IPR000719 GO:0004672(InterPro)|GO:0005524(InterPro)|GO:0006468(InterPro)
Cco05g0821 442 SUPERFAMILY Protein kinase-like (PK-like) 3 262 IPR011009 -
Cco05g0821 442 MobiDBLite consensus disorder prediction 284 302 - -
Cco05g0821 442 SMART serkin_6 6 261 IPR000719 GO:0004672(InterPro)|GO:0005524(InterPro)|GO:0006468(InterPro)
Cco05g0821 442 FunFam Non-specific serine/threonine protein kinase 304 426 - -
Cco05g0821 442 ProSiteProfiles NAF domain profile. 302 326 IPR018451 GO:0007165(InterPro)
Cco05g0821 442 Pfam NAF domain 304 363 IPR004041 GO:0007165(InterPro)
Cco05g0821 442 Gene3D Kinase associated domain 1, KA1 306 424 - -
Cco05g0821 442 CDD CIPK_C 308 419 - -
Cco05g0821 442 ProSitePatterns Protein kinases ATP-binding region signature. 12 35 IPR017441 GO:0005524(InterPro)
Cco05g0821 442 FunFam Non-specific serine/threonine protein kinase 1 85 - -
Cco05g0821 442 MobiDBLite consensus disorder prediction 266 302 - -
Cco05g0821 442 PANTHER CALCIUM/CALMODULIN-DEPENDENT PROTEIN KINASE KINASE-RELATED 4 412 - GO:0004674(PANTHER)|GO:0006468(PANTHER)|GO:0007165(PANTHER)
       

Duplication type information

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Cco05g0821 Cco-Chr5:6884682 Cco06g0423 Cco-Chr6:4620896 1.10E-127 dispersed
Cco05g0821 Cco-Chr5:6884682 Cco06g0422 Cco-Chr6:4602408 7.70E-158 wgd
       

Transcription factors information

Select Gene Hmm_acc Hmm_name Score E-value Regulatory Factors Family
86832 PF00069 Pkinase 2.20E-70 CL0016 Cco PK
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Cco05g0821 K07198 - csv:101205987 850.121