Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Cco05g0852 ATGGAGGACGATTTCGAGTTCCCGTCTGCAAGCAATGTAGACGAGGAAATGGGCTTGCCTGAGGACGAAGCGGAGAGCTCAGTTCTGAAGGTTGGCGAAGAGAAGGAGATTGGAAAGAATGGCCTGAAGAAGAAACTTGTTAAAGAAGGCGAAGGATGGGAAACTCCCGAGACTGGTGATGAAGTCGAAGTGCATTATACGGGAACCCTTCTTGATGGAACTCAATTCGATTCGAGCCGTGACCGAGGAACGCCCTTCAAGTTCAAGCTCGGGGAAGGGCAAGTGATTAAAGGATGGGATGAAGGTATTAAAACAATGAAAAAGGGTGAAAGTGCAGTTTTCACGATACCCCCTGAATTGGCCTATGGAGAGTCTGGCTCTCCTCCAACAATTCCACCGAATGCTACTCTTCAATTTGATGTTGAGCTACTTTCATGGCACAGCGTCAAAGACATCTGCCAGGATGGAGGAATCTTGAAAAAGATCCTTGTTAAAGGAGACGGCTGGGACAAACCGAAGGATTTGGACGAAGTCTCGGTTCTTTATGAGGCTCGTCTTGAAGATGGTACACTGATCTCAAAGTCTGATGGGGCCCAATTCACTGTTGAAAAAGGGTACTTCTGTCCTGCCTTGGCAACGTCCGTGAAGACCATGAAGAAGGGAGAGAAAGCTTTGTTGACTGTGAGGCCACAATATGCATTTGGGGAGTCTGGTAGGCCTGGAGCTGGAGAAGAAGGTGCTGTGCCTCCAAATGCCACACTTCAGATAACCCTTCAATTGGTTTCTTGGAAAACTGTTACAGAGGTTACTAAGGACAAGAAGGTCCTGAAAAAGACCCAGAAGGAGGGAGAAGGATATGAACAGCCAAATGAGGGAGCAGTGGTGCAAGTGAAACTAACCGGTAAACTGGCCAATGGGACGACTTTTACGAAAAAGGGTGATGTTGAGAAGCCATTTGAGTTCAAAACTGACGAAGAACAAGTCATTGAAGGACTTGATTTGGCTGTGAGAAAGATGAAGAAGGGAGAAATTGCCTTGGTGACCATCCATCCACAATATGCTTTTGGATCTTCTGATTCACCCCAAGATCTAGCTGTGGTTCCTGCAAATTCAACTGTATATTATGAAGTTGAGCTAGTTTCTTTCGTCAAAGAAAAAGAATCTTGGGATCTGAACACAGCAGAAGAGAAAATAGAAGCAGCAGGTAAGAAGAAGGAAGAAGGAAATATTTTGTTCAAAGCTGGAAAATATGAGAGAGCATCAAGGAGATATGAAAAGGCTGTGCGCTACATCGAATACGATACTTCTTTCAGCGATGAAGAGAAGCAACAGAGCAAGGCACTGAAGATTTCGTGCAACCTCAACAATGCTGCGTGCAAATTGAAAGTCAAAGATTACAAGCAAGCAGAGAAGCTCTGTACAAAGGTGTTGGAACTTGACAGTCGGAACGTGAAAGCTCTCTATAGAAGGGCTCAGGCATATATTCAACTTGTTGATCTTGATCTTGCTGAGCAGGATATCAAAAAAGCCCTTGAGATAGACCCAGATAACAGGGAAGTGAAGATCGAATACAGACAGTTGAAAGAGAAAGTGAGGGAATACAACAAGAGAGATGCCCAGTTCTATGGCAACATTTTTGCAAAAATGAACAAGCTGGAGCAGGCGAAGTCCGCTAATTCAGCAGGGAAGGAGGGGGCAGTGCCAATGACCATTGATAGCAAAGCTTAG 1728 45.02 MEDDFEFPSASNVDEEMGLPEDEAESSVLKVGEEKEIGKNGLKKKLVKEGEGWETPETGDEVEVHYTGTLLDGTQFDSSRDRGTPFKFKLGEGQVIKGWDEGIKTMKKGESAVFTIPPELAYGESGSPPTIPPNATLQFDVELLSWHSVKDICQDGGILKKILVKGDGWDKPKDLDEVSVLYEARLEDGTLISKSDGAQFTVEKGYFCPALATSVKTMKKGEKALLTVRPQYAFGESGRPGAGEEGAVPPNATLQITLQLVSWKTVTEVTKDKKVLKKTQKEGEGYEQPNEGAVVQVKLTGKLANGTTFTKKGDVEKPFEFKTDEEQVIEGLDLAVRKMKKGEIALVTIHPQYAFGSSDSPQDLAVVPANSTVYYEVELVSFVKEKESWDLNTAEEKIEAAGKKKEEGNILFKAGKYERASRRYEKAVRYIEYDTSFSDEEKQQSKALKISCNLNNAACKLKVKDYKQAEKLCTKVLELDSRNVKALYRRAQAYIQLVDLDLAEQDIKKALEIDPDNREVKIEYRQLKEKVREYNKRDAQFYGNIFAKMNKLEQAKSANSAGKEGAVPMTIDSKA 575
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
5 7173213 7176819 + CcPI632755_05g008520.1 Cco05g0852 178480
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Cco05g0852 575 Pfam Tetratricopeptide repeat 484 517 IPR019734 GO:0005515(InterPro)
Cco05g0852 575 Pfam FKBP-type peptidyl-prolyl cis-trans isomerase 170 260 IPR001179 GO:0003755(InterPro)
Cco05g0852 575 Pfam FKBP-type peptidyl-prolyl cis-trans isomerase 286 380 IPR001179 GO:0003755(InterPro)
Cco05g0852 575 Pfam FKBP-type peptidyl-prolyl cis-trans isomerase 53 144 IPR001179 GO:0003755(InterPro)
Cco05g0852 575 SUPERFAMILY FKBP-like 151 267 - -
Cco05g0852 575 Coils Coil 517 537 - -
Cco05g0852 575 FunFam Peptidylprolyl isomerase 265 385 - -
Cco05g0852 575 FunFam Peptidylprolyl isomerase 151 264 - -
Cco05g0852 575 MobiDBLite consensus disorder prediction 1 34 - -
Cco05g0852 575 ProSiteProfiles FKBP-type peptidyl-prolyl cis-trans isomerase domain profile. 292 383 IPR001179 GO:0003755(InterPro)
Cco05g0852 575 Gene3D - 265 389 IPR046357 GO:0003755(InterPro)
Cco05g0852 575 ProSiteProfiles FKBP-type peptidyl-prolyl cis-trans isomerase domain profile. 175 264 IPR001179 GO:0003755(InterPro)
Cco05g0852 575 Gene3D - 151 264 IPR046357 GO:0003755(InterPro)
Cco05g0852 575 Gene3D Tetratricopeptide repeat domain 390 544 IPR011990 GO:0005515(InterPro)
Cco05g0852 575 SMART tpr_5 401 434 IPR019734 GO:0005515(InterPro)
Cco05g0852 575 SMART tpr_5 450 483 IPR019734 GO:0005515(InterPro)
Cco05g0852 575 SMART tpr_5 484 517 IPR019734 GO:0005515(InterPro)
Cco05g0852 575 SUPERFAMILY FKBP-like 28 155 - -
Cco05g0852 575 FunFam Peptidylprolyl isomerase 32 150 - -
Cco05g0852 575 SUPERFAMILY TPR-like 396 550 IPR011990 GO:0005515(InterPro)
Cco05g0852 575 MobiDBLite consensus disorder prediction 1 22 - -
Cco05g0852 575 Gene3D - 32 150 IPR046357 GO:0003755(InterPro)
Cco05g0852 575 PANTHER PEPTIDYLPROLYL ISOMERASE 25 145 IPR050754 -
Cco05g0852 575 SUPERFAMILY FKBP-like 270 399 - -
Cco05g0852 575 FunFam Peptidylprolyl isomerase 388 544 - -
Cco05g0852 575 ProSiteProfiles TPR repeat profile. 484 517 IPR019734 GO:0005515(InterPro)
Cco05g0852 575 ProSiteProfiles FKBP-type peptidyl-prolyl cis-trans isomerase domain profile. 59 147 IPR001179 GO:0003755(InterPro)
       

Duplication type information

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Cco02g2558 Cco-Chr2:37914035 Cco05g0852 Cco-Chr5:7173213 7.90E-13 dispersed
Cco04g0946 Cco-Chr4:25075364 Cco05g0852 Cco-Chr5:7173213 2.20E-56 dispersed
Cco05g0852 Cco-Chr5:7173213 Cco09g0831 Cco-Chr9:7747442 5.00E-242 dispersed
Cco05g0852 Cco-Chr5:7173213 Cco05g0897 Cco-Chr5:7759478 4.80E-19 transposed
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Cco05g0852 K09571 - csv:101210041 1031.17