Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Cco05g0860 ATGGAGAAGGACAAACCCCAAGGCTATTCTGGTGGATTTCCACCACCATCAAGTCGTTACTCAGGTCTTTCACCAACTGGAAGCATTTTCAATGGAAAATCTGAGGCAACTTCATCTTCAATATTGCTTCCTCCGATGCCTTCGGGTGCTCTTTCTGATTCAGGTCAATTTGGTCGTGAAAGGCCCACTGATTCTAATCGGTTCAGCCATGATATTAGTCAAATGCCTGATAACCCACCGAGAAATATTGGTCACAGACGTGCCCATTCAGAAATCCTGACCCTTCCTGATGATATTTGTTTTGACAATGACCTTGGTGTCATTGGTAGTGCTGATGGCCCTTCTTTTTCTGATGATACTGAGGAAGATTTGTTGTCCATGTACCTTGACATGGACAAATTCAATTCTTCGACTGCCACCTCTGCAATACAAGTTGGCGAGTCATCTTCTGCTGTTGGAGATGCAATATCAACTCCTACTCCAACAATTGGAGCAGCAACCTCTAAAGATGATACTGCTGTTGGTTTGAAGGAGAGGCCAAGAGTTAGACACCAGCATAGCCAGTCCATGGATGGCTTGACAACCATAAAGCCTGAGATGCTTGTCTCAGGGTCTGAAGAAGCCTCTGCAGCCGATTCCAAGAAAGCCATGTCAGCTACAAAGCTCGCTGAGCTTGCGCTTATTGACCCCAAACGTGCTAAGAGGATATGGGCAAATCGACAGTCGGCTGCTAGGTCAAAGGAAAGAAAGATGCGGTACATTGCTGAGCTTGAACGGAAAGTTCAGACTCTGCAAACAGAGGCAACTTCTTTATCTGCTCAGTTAACCCTCTTACAGAGAGACACTAACGGTCTTTCTGCTGAGAACAATGAATTAAAGCTGCGGTTGCAGACAATGGAGCAGCAGGTTCACCTGCAAGATGCTCTAAATGAAGCACTCAAAGAGGAAATTCAGCATTTGAAAGTATTGACTGGCCAAGCAATCCCAAATGGTGGATCAGTTACAAACTTTGCTTCCTTTGGAGCTGGCCAACCATTTTACCCAAATAATCAAGCAATGCACACTTTGTTAACTGCTCAGCAGTTTCAACAACTTCAAATCCACTCCCAGCAGCAGCAGCAGCAACAACAACAACATTACCAGTACCATCAGCTGCATCAGCTTCATCAACAGCCAACTGGAGACAACAAATCGAAAGGATCGACTTCTTCTCCGAGTCCAAAAGACAACACATCAGATACGTCCTCTCCCACTTGTTGA 1260 45.24 MEKDKPQGYSGGFPPPSSRYSGLSPTGSIFNGKSEATSSSILLPPMPSGALSDSGQFGRERPTDSNRFSHDISQMPDNPPRNIGHRRAHSEILTLPDDICFDNDLGVIGSADGPSFSDDTEEDLLSMYLDMDKFNSSTATSAIQVGESSSAVGDAISTPTPTIGAATSKDDTAVGLKERPRVRHQHSQSMDGLTTIKPEMLVSGSEEASAADSKKAMSATKLAELALIDPKRAKRIWANRQSAARSKERKMRYIAELERKVQTLQTEATSLSAQLTLLQRDTNGLSAENNELKLRLQTMEQQVHLQDALNEALKEEIQHLKVLTGQAIPNGGSVTNFASFGAGQPFYPNNQAMHTLLTAQQFQQLQIHSQQQQQQQQQHYQYHQLHQLHQQPTGDNKSKGSTSSPSPKDNTSDTSSPTC 419
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
5 7265912 7269603 - CcPI632755_05g008600.1 Cco05g0860 178488
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Cco05g0860 419 MobiDBLite consensus disorder prediction 58 76 - -
Cco05g0860 419 ProSiteProfiles Basic-leucine zipper (bZIP) domain profile. 229 292 IPR004827 GO:0003700(InterPro)|GO:0006355(InterPro)
Cco05g0860 419 Gene3D - 230 283 - -
Cco05g0860 419 PANTHER TRANSCRIPTION FACTOR POSF21-RELATED 69 396 - GO:0003700(PANTHER)|GO:0005634(PANTHER)
Cco05g0860 419 MobiDBLite consensus disorder prediction 388 419 - -
Cco05g0860 419 MobiDBLite consensus disorder prediction 1 83 - -
Cco05g0860 419 SUPERFAMILY Leucine zipper domain 231 282 IPR046347 GO:0003700(InterPro)|GO:0006355(InterPro)
Cco05g0860 419 MobiDBLite consensus disorder prediction 17 45 - -
Cco05g0860 419 FunFam probable transcription factor PosF21 230 283 - -
Cco05g0860 419 CDD bZIP_plant_RF2 232 281 IPR044759 GO:0003700(InterPro)|GO:0006355(InterPro)
Cco05g0860 419 Pfam bZIP transcription factor 231 285 IPR004827 GO:0003700(InterPro)|GO:0006355(InterPro)
Cco05g0860 419 Coils Coil 247 316 - -
Cco05g0860 419 SMART brlzneu 227 291 IPR004827 GO:0003700(InterPro)|GO:0006355(InterPro)
       

Duplication type information

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Cco05g0860 Cco-Chr5:7265912 Cco07g0536 Cco-Chr7:6877146 2.90E-50 dispersed
Cco05g0860 Cco-Chr5:7265912 Cco05g0863 Cco-Chr5:7305328 1.50E-155 proximal
       

Transcription factors information

Select Gene Hmm_acc Hmm_name Score E-value Regulatory Factors Family
59260 PF00170 bZIP_1 1.80E-08 CL0018 Cco TF
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Cco05g0860 - - - 0.0