Gene search
Sequence information

Select | Gene | Cds | Cds_length | GC_content | Pep | Pep_length |
---|---|---|---|---|---|---|
Cco05g0863 | ATGGACAAGGAAAAGCCCCAATGCCATGGGGGAGGATTTCTTCACCAATCAAGTCGTTACTCAGGATTTTCATCTGCTGAAACTAGTTTCAATGGAAAATCTGAAGCAACCTCGTCTTCAATGTCATTTCCTCCATTGGCTCCCAGTACTAATTCTGATTGGGCTCAATCTGGCCGTGGAATGTCCACCGATTCCGCTCGGTTCAGCCATGATATTAGTCGGATGCCTGAAAATCCACGGCGAAATGTTGGTCATCGGCGTGCCCATTCAGAGATCTTGACCCTCCCAGATGATATTTGTTTCGATAGTGATCTTGGTATCATTGGTGGGGCTGATGGGCCTTCTCTTTCTGATGATACTGAGGAAGATTTGTTGTCCATGTACCTTGACATGGATAAATTCAATTCCTCGACTGCTACTTCTGCAACTCAAGTGGGCGATTCATCTTCCCCTCTTGTAGAAGCAGCAGCAACTTCTACAGATGATATTGCTGTTGGTTTGAAGGAAAGGCCGAGAGTTAGACATCAGCATAGCCAGTCCATGGACGGCTTGACAAACATCAAAGCTGAGATGCTTGTCTCTGGGTCTGACGAAGCCTCTGCAGCTGATACCAAGAAAGCTATGTCAGCTGCAAAGCTTGCTGAGCTTGCTTTGATTGACCCCAAACGTGCAAAAAGGATATGGGCAAACAGACAGTCAGCTGCAAGGTCAAAGGAAAGAAAGATGCGATACATTGCTGAGCTTGAACGGAAAGTTCAAACATTGCAAACAGAGGCAACTTCTTTGTCCACTCAGTTGACCCTATTACAGAGAGATGCAAATGGTATCACTGCTGAGAACAGTGAACTAAAGCTGCGGTTGCAGACAATGGAACAGCAAGTTCACCTGCAAGACGCTTTAAATGAAGCACTGAAAGAAGAAATTCAGCATTTGAAAGTCTTGACTGGCCAAGCAATGCCAAACGGTAGATCAATTACAAACTTTGCTTCCTTTGGAGCCGGCCAACAATTCTATCCTCCAAACAATCAAGCAATGCATACTTTGTTGACTGCGCAGCAGTTTCAACAACTTCAAATACAATCCCAACAGCAACAGCGTTTTCAGTACCAACAGCTGCATCAGCTTCAACAACAACAGGCTGGAGACATCAGAATGAAAGGATCCATATCTCCTCAAAGTTCGAAAGACTCTGCATCGGACACAAAGCCGTCTACCACTTGTTGA | 1224 | 45.18 | MDKEKPQCHGGGFLHQSSRYSGFSSAETSFNGKSEATSSSMSFPPLAPSTNSDWAQSGRGMSTDSARFSHDISRMPENPRRNVGHRRAHSEILTLPDDICFDSDLGIIGGADGPSLSDDTEEDLLSMYLDMDKFNSSTATSATQVGDSSSPLVEAAATSTDDIAVGLKERPRVRHQHSQSMDGLTNIKAEMLVSGSDEASAADTKKAMSAAKLAELALIDPKRAKRIWANRQSAARSKERKMRYIAELERKVQTLQTEATSLSTQLTLLQRDANGITAENSELKLRLQTMEQQVHLQDALNEALKEEIQHLKVLTGQAMPNGRSITNFASFGAGQQFYPPNNQAMHTLLTAQQFQQLQIQSQQQQRFQYQQLHQLQQQQAGDIRMKGSISPQSSKDSASDTKPSTTC | 407 |
Gff information

Chromosome | Start | End | Strand | Old_gene | Gene | Num |
---|---|---|---|---|---|---|
5 | 7305328 | 7310635 | - | CcPI632755_05g008630.1 | Cco05g0863 | 178491 |
Annotation information

Select | Seq ID | Length | Analysis | Description | Start | End | IPR | GO |
---|---|---|---|---|---|---|---|---|
Cco05g0863 | 407 | FunFam | probable transcription factor PosF21 | 221 | 274 | - | - | |
Cco05g0863 | 407 | SMART | brlzneu | 218 | 282 | IPR004827 | GO:0003700(InterPro)|GO:0006355(InterPro) | |
Cco05g0863 | 407 | SUPERFAMILY | Leucine zipper domain | 222 | 272 | IPR046347 | GO:0003700(InterPro)|GO:0006355(InterPro) | |
Cco05g0863 | 407 | Coils | Coil | 238 | 307 | - | - | |
Cco05g0863 | 407 | ProSiteProfiles | Basic-leucine zipper (bZIP) domain profile. | 220 | 283 | IPR004827 | GO:0003700(InterPro)|GO:0006355(InterPro) | |
Cco05g0863 | 407 | MobiDBLite | consensus disorder prediction | 17 | 69 | - | - | |
Cco05g0863 | 407 | MobiDBLite | consensus disorder prediction | 70 | 86 | - | - | |
Cco05g0863 | 407 | Gene3D | - | 221 | 273 | - | - | |
Cco05g0863 | 407 | PANTHER | TRANSCRIPTION FACTOR POSF21-RELATED | 69 | 380 | - | GO:0003700(PANTHER)|GO:0005634(PANTHER) | |
Cco05g0863 | 407 | Pfam | bZIP transcription factor | 222 | 270 | IPR004827 | GO:0003700(InterPro)|GO:0006355(InterPro) | |
Cco05g0863 | 407 | CDD | bZIP_plant_RF2 | 223 | 272 | IPR044759 | GO:0003700(InterPro)|GO:0006355(InterPro) | |
Cco05g0863 | 407 | MobiDBLite | consensus disorder prediction | 380 | 407 | - | - | |
Cco05g0863 | 407 | MobiDBLite | consensus disorder prediction | 1 | 86 | - | - |
Duplication type information

Select | Gene1 | Location1 | Gene2 | Location2 | E-value | Duplicated-type |
---|---|---|---|---|---|---|
Cco05g0863 | Cco-Chr5:7305328 | Cco07g0536 | Cco-Chr7:6877146 | 2.90E-50 | dispersed | |
Cco05g0860 | Cco-Chr5:7265912 | Cco05g0863 | Cco-Chr5:7305328 | 1.50E-155 | proximal |
Transcription factors information

Select | Gene | Hmm_acc | Hmm_name | Score | E-value | Regulatory Factors | Family |
---|---|---|---|---|---|---|---|
59261 | PF00170 | bZIP_1 | 9.90E-09 | CL0018 | Cco | TF |
Pathway information

Select | Query | KO | Definition | Second KO | KEGG Genes ID | GHOSTX Score |
---|---|---|---|---|---|---|
Cco05g0863 | - | - | - | 0.0 |