Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Cco05g0863 ATGGACAAGGAAAAGCCCCAATGCCATGGGGGAGGATTTCTTCACCAATCAAGTCGTTACTCAGGATTTTCATCTGCTGAAACTAGTTTCAATGGAAAATCTGAAGCAACCTCGTCTTCAATGTCATTTCCTCCATTGGCTCCCAGTACTAATTCTGATTGGGCTCAATCTGGCCGTGGAATGTCCACCGATTCCGCTCGGTTCAGCCATGATATTAGTCGGATGCCTGAAAATCCACGGCGAAATGTTGGTCATCGGCGTGCCCATTCAGAGATCTTGACCCTCCCAGATGATATTTGTTTCGATAGTGATCTTGGTATCATTGGTGGGGCTGATGGGCCTTCTCTTTCTGATGATACTGAGGAAGATTTGTTGTCCATGTACCTTGACATGGATAAATTCAATTCCTCGACTGCTACTTCTGCAACTCAAGTGGGCGATTCATCTTCCCCTCTTGTAGAAGCAGCAGCAACTTCTACAGATGATATTGCTGTTGGTTTGAAGGAAAGGCCGAGAGTTAGACATCAGCATAGCCAGTCCATGGACGGCTTGACAAACATCAAAGCTGAGATGCTTGTCTCTGGGTCTGACGAAGCCTCTGCAGCTGATACCAAGAAAGCTATGTCAGCTGCAAAGCTTGCTGAGCTTGCTTTGATTGACCCCAAACGTGCAAAAAGGATATGGGCAAACAGACAGTCAGCTGCAAGGTCAAAGGAAAGAAAGATGCGATACATTGCTGAGCTTGAACGGAAAGTTCAAACATTGCAAACAGAGGCAACTTCTTTGTCCACTCAGTTGACCCTATTACAGAGAGATGCAAATGGTATCACTGCTGAGAACAGTGAACTAAAGCTGCGGTTGCAGACAATGGAACAGCAAGTTCACCTGCAAGACGCTTTAAATGAAGCACTGAAAGAAGAAATTCAGCATTTGAAAGTCTTGACTGGCCAAGCAATGCCAAACGGTAGATCAATTACAAACTTTGCTTCCTTTGGAGCCGGCCAACAATTCTATCCTCCAAACAATCAAGCAATGCATACTTTGTTGACTGCGCAGCAGTTTCAACAACTTCAAATACAATCCCAACAGCAACAGCGTTTTCAGTACCAACAGCTGCATCAGCTTCAACAACAACAGGCTGGAGACATCAGAATGAAAGGATCCATATCTCCTCAAAGTTCGAAAGACTCTGCATCGGACACAAAGCCGTCTACCACTTGTTGA 1224 45.18 MDKEKPQCHGGGFLHQSSRYSGFSSAETSFNGKSEATSSSMSFPPLAPSTNSDWAQSGRGMSTDSARFSHDISRMPENPRRNVGHRRAHSEILTLPDDICFDSDLGIIGGADGPSLSDDTEEDLLSMYLDMDKFNSSTATSATQVGDSSSPLVEAAATSTDDIAVGLKERPRVRHQHSQSMDGLTNIKAEMLVSGSDEASAADTKKAMSAAKLAELALIDPKRAKRIWANRQSAARSKERKMRYIAELERKVQTLQTEATSLSTQLTLLQRDANGITAENSELKLRLQTMEQQVHLQDALNEALKEEIQHLKVLTGQAMPNGRSITNFASFGAGQQFYPPNNQAMHTLLTAQQFQQLQIQSQQQQRFQYQQLHQLQQQQAGDIRMKGSISPQSSKDSASDTKPSTTC 407
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
5 7305328 7310635 - CcPI632755_05g008630.1 Cco05g0863 178491
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Cco05g0863 407 FunFam probable transcription factor PosF21 221 274 - -
Cco05g0863 407 SMART brlzneu 218 282 IPR004827 GO:0003700(InterPro)|GO:0006355(InterPro)
Cco05g0863 407 SUPERFAMILY Leucine zipper domain 222 272 IPR046347 GO:0003700(InterPro)|GO:0006355(InterPro)
Cco05g0863 407 Coils Coil 238 307 - -
Cco05g0863 407 ProSiteProfiles Basic-leucine zipper (bZIP) domain profile. 220 283 IPR004827 GO:0003700(InterPro)|GO:0006355(InterPro)
Cco05g0863 407 MobiDBLite consensus disorder prediction 17 69 - -
Cco05g0863 407 MobiDBLite consensus disorder prediction 70 86 - -
Cco05g0863 407 Gene3D - 221 273 - -
Cco05g0863 407 PANTHER TRANSCRIPTION FACTOR POSF21-RELATED 69 380 - GO:0003700(PANTHER)|GO:0005634(PANTHER)
Cco05g0863 407 Pfam bZIP transcription factor 222 270 IPR004827 GO:0003700(InterPro)|GO:0006355(InterPro)
Cco05g0863 407 CDD bZIP_plant_RF2 223 272 IPR044759 GO:0003700(InterPro)|GO:0006355(InterPro)
Cco05g0863 407 MobiDBLite consensus disorder prediction 380 407 - -
Cco05g0863 407 MobiDBLite consensus disorder prediction 1 86 - -
       

Duplication type information

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Cco05g0863 Cco-Chr5:7305328 Cco07g0536 Cco-Chr7:6877146 2.90E-50 dispersed
Cco05g0860 Cco-Chr5:7265912 Cco05g0863 Cco-Chr5:7305328 1.50E-155 proximal
       

Transcription factors information

Select Gene Hmm_acc Hmm_name Score E-value Regulatory Factors Family
59261 PF00170 bZIP_1 9.90E-09 CL0018 Cco TF
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Cco05g0863 - - - 0.0