Gene search
Sequence information
| Select | Gene | Cds | Cds_length | GC_content | Pep | Pep_length |
|---|---|---|---|---|---|---|
| Cco05g0884 | ATGACTGAGTTCAAGAAAATGGTGATCCAATTTGCCATGGAAAGAGCTCTGAATGCTGAGAGTTACACGAAAGATGTCGGCTCGAAGTGCCGAAACGGGAAGGAAAAGGCAGCTTGGGCTGATTGTTTAAAGCTTTACCAAAACACCATCCTTCAACTCAACAAAACTCTAGATTCGTCTACTAGCTGTACTGATTTCGATATCCAAACCTGGCTCAGTACTGCCTTAACCAACCTCGAAACATGTCGCACCGGGTTCGCCGAGCTTAATGTTTCAGACTATATATTACCGATGATCATGTCGAACAATGTCACAAGGCTAATAAGCAACAGTTTGGCTATTAACAATGCTTCAGGAGGTGGGGTATTGGGGAAGGAAACATATAAAAAGGGTTTTCCAAGTTGGGTTTCAGGTGGTGATAGGAGGTTATTGCAGTCGTCGTCGATAAAGGCGGACATTGTGGTGGCTCAGGACGGGTCCGGTAATTATACGACGGTCGGAGCTGCGGTAGAGGAAGCTGGGAAAAGGAAGGGAAATGGGAGATTTGTTATACAAGTAAAGAGAGGGGTTTATGAAGAAAATGTGGAGATAGGAAGTAAGATGAAGAATATAATGTTGATTGGAGATGGAATGAGATTTACTTTCATTACTGGAAATAGAAGTGTTGGAGGAGGCTCCACCACTTTCAATTCTGCTACTGTTGCGGTGACTGGTGAAGGATTTATAGCTCGAGGAATCACATTCCGAAACACCGCAGGTCCTGAAAACCATCAAGCAGTAGCTCTCCGATCAGGCGCGGATCTTTCGGTTTTCTACCGTTGTGCATTCGAAGGATATCAAGACACCCTCTACGTGCATTCACAAAGACAATTCTATAAAGAGTGTTATATTTACGGTACAGTAGATTTCATATTTGGAAATGGTGCAGTTGTTCTACAAAACTGCATGATTTACGCAAGGAAGCCAATGAATGGTCAGAAAAATGCAGTGACCGCTCAAGGACGAACTGACCCAAATCAAAACACTGGCATTTCAATTCACAATTCACGAGTGATGGCTACAGATGATTTGAAAGCAGTGGAGAGCAGAGTGAAAACTTACTTAGGAAGGCCATGGAAGGAGTATTCTCGAACAGTTTTCATGAAAACTTACCTTGATAATTTGGTTGATCCAGTGGGTTGGTTGGAATGGGATGGTGAATTTGCACTTAATACTTTATATTATGGAGAGTATAAGAATATTGGTCCTCGTTCATCCACTACTCAGCGAGTGAATTGGAAAGGCTATCGTGTTATAACCAATGAAACAGAGGCATCAGAGTTTAGTGTCCAAAATTTCATTGCTGGCCAGTCGTGGTTGCCGGATACAGAGGTCCCATTCGCTCCTGGACTTTAG | 1395 | 43.01 | MTEFKKMVIQFAMERALNAESYTKDVGSKCRNGKEKAAWADCLKLYQNTILQLNKTLDSSTSCTDFDIQTWLSTALTNLETCRTGFAELNVSDYILPMIMSNNVTRLISNSLAINNASGGGVLGKETYKKGFPSWVSGGDRRLLQSSSIKADIVVAQDGSGNYTTVGAAVEEAGKRKGNGRFVIQVKRGVYEENVEIGSKMKNIMLIGDGMRFTFITGNRSVGGGSTTFNSATVAVTGEGFIARGITFRNTAGPENHQAVALRSGADLSVFYRCAFEGYQDTLYVHSQRQFYKECYIYGTVDFIFGNGAVVLQNCMIYARKPMNGQKNAVTAQGRTDPNQNTGISIHNSRVMATDDLKAVESRVKTYLGRPWKEYSRTVFMKTYLDNLVDPVGWLEWDGEFALNTLYYGEYKNIGPRSSTTQRVNWKGYRVITNETEASEFSVQNFIAGQSWLPDTEVPFAPGL | 464 |
Gff information
| Chromosome | Start | End | Strand | Old_gene | Gene | Num |
|---|---|---|---|---|---|---|
| 5 | 7629229 | 7632020 | - | CcPI632755_05g008840.1 | Cco05g0884 | 178512 |
Annotation information
| Select | Seq ID | Length | Analysis | Description | Start | End | IPR | GO |
|---|---|---|---|---|---|---|---|---|
| Cco05g0884 | 464 | SMART | PMEI_2 | 1 | 114 | IPR006501 | GO:0004857(InterPro) | |
| Cco05g0884 | 464 | NCBIfam | pectinesterase inhibitor domain | 3 | 116 | IPR006501 | GO:0004857(InterPro) | |
| Cco05g0884 | 464 | SUPERFAMILY | Pectin lyase-like | 148 | 462 | IPR011050 | - | |
| Cco05g0884 | 464 | Gene3D | Invertase/pectin methylesterase inhibitor family protein | 1 | 117 | IPR035513 | - | |
| Cco05g0884 | 464 | SUPERFAMILY | Plant invertase/pectin methylesterase inhibitor | 3 | 116 | IPR035513 | - | |
| Cco05g0884 | 464 | ProSitePatterns | Pectinesterase signature 2. | 297 | 306 | IPR033131 | - | |
| Cco05g0884 | 464 | Pfam | Pectinesterase | 152 | 449 | IPR000070 | GO:0030599(InterPro)|GO:0042545(InterPro) | |
| Cco05g0884 | 464 | PANTHER | PECTINESTERASE | 4 | 455 | - | GO:0030599(PANTHER)|GO:0046910(PANTHER) | |
| Cco05g0884 | 464 | Pfam | Plant invertase/pectin methylesterase inhibitor | 4 | 114 | IPR006501 | GO:0004857(InterPro) | |
| Cco05g0884 | 464 | CDD | PMEI-like_3 | 3 | 117 | - | - | |
| Cco05g0884 | 464 | Gene3D | - | 145 | 464 | IPR012334 | - | |
| Cco05g0884 | 464 | FunFam | Pectinesterase | 146 | 464 | - | - |
Duplication type information
| Select | Gene1 | Location1 | Gene2 | Location2 | E-value | Duplicated-type |
|---|---|---|---|---|---|---|
| Cco01g0498 | Cco-Chr1:4847802 | Cco05g0884 | Cco-Chr5:7629229 | 7.30E-200 | dispersed | |
| Cco01g0669 | Cco-Chr1:6941135 | Cco05g0884 | Cco-Chr5:7629229 | 4.60E-130 | dispersed | |
| Cco02g0057 | Cco-Chr2:605782 | Cco05g0884 | Cco-Chr5:7629229 | 1.00E-76 | dispersed | |
| Cco02g0058 | Cco-Chr2:611440 | Cco05g0884 | Cco-Chr5:7629229 | 9.80E-84 | dispersed | |
| Cco05g0282 | Cco-Chr5:2267585 | Cco05g0884 | Cco-Chr5:7629229 | 5.00E-110 | dispersed | |
| Cco05g0283 | Cco-Chr5:2282460 | Cco05g0884 | Cco-Chr5:7629229 | 1.10E-155 | dispersed | |
| Cco05g0884 | Cco-Chr5:7629229 | Cco10g0571 | Cco-Chr10:7365276 | 4.40E-156 | dispersed | |
| Cco05g0884 | Cco-Chr5:7629229 | Cco05g0887 | Cco-Chr5:7660998 | 2.20E-06 | proximal |
Pathway information
| Select | Query | KO | Definition | Second KO | KEGG Genes ID | GHOSTX Score |
|---|---|---|---|---|---|---|
| Cco05g0884 | K01051 | - | csv:101211449 | 858.981 |