Gene search


Sequence information


Select Gene Cds Cds_length GC_content Pep Pep_length
Cco05g0884 ATGACTGAGTTCAAGAAAATGGTGATCCAATTTGCCATGGAAAGAGCTCTGAATGCTGAGAGTTACACGAAAGATGTCGGCTCGAAGTGCCGAAACGGGAAGGAAAAGGCAGCTTGGGCTGATTGTTTAAAGCTTTACCAAAACACCATCCTTCAACTCAACAAAACTCTAGATTCGTCTACTAGCTGTACTGATTTCGATATCCAAACCTGGCTCAGTACTGCCTTAACCAACCTCGAAACATGTCGCACCGGGTTCGCCGAGCTTAATGTTTCAGACTATATATTACCGATGATCATGTCGAACAATGTCACAAGGCTAATAAGCAACAGTTTGGCTATTAACAATGCTTCAGGAGGTGGGGTATTGGGGAAGGAAACATATAAAAAGGGTTTTCCAAGTTGGGTTTCAGGTGGTGATAGGAGGTTATTGCAGTCGTCGTCGATAAAGGCGGACATTGTGGTGGCTCAGGACGGGTCCGGTAATTATACGACGGTCGGAGCTGCGGTAGAGGAAGCTGGGAAAAGGAAGGGAAATGGGAGATTTGTTATACAAGTAAAGAGAGGGGTTTATGAAGAAAATGTGGAGATAGGAAGTAAGATGAAGAATATAATGTTGATTGGAGATGGAATGAGATTTACTTTCATTACTGGAAATAGAAGTGTTGGAGGAGGCTCCACCACTTTCAATTCTGCTACTGTTGCGGTGACTGGTGAAGGATTTATAGCTCGAGGAATCACATTCCGAAACACCGCAGGTCCTGAAAACCATCAAGCAGTAGCTCTCCGATCAGGCGCGGATCTTTCGGTTTTCTACCGTTGTGCATTCGAAGGATATCAAGACACCCTCTACGTGCATTCACAAAGACAATTCTATAAAGAGTGTTATATTTACGGTACAGTAGATTTCATATTTGGAAATGGTGCAGTTGTTCTACAAAACTGCATGATTTACGCAAGGAAGCCAATGAATGGTCAGAAAAATGCAGTGACCGCTCAAGGACGAACTGACCCAAATCAAAACACTGGCATTTCAATTCACAATTCACGAGTGATGGCTACAGATGATTTGAAAGCAGTGGAGAGCAGAGTGAAAACTTACTTAGGAAGGCCATGGAAGGAGTATTCTCGAACAGTTTTCATGAAAACTTACCTTGATAATTTGGTTGATCCAGTGGGTTGGTTGGAATGGGATGGTGAATTTGCACTTAATACTTTATATTATGGAGAGTATAAGAATATTGGTCCTCGTTCATCCACTACTCAGCGAGTGAATTGGAAAGGCTATCGTGTTATAACCAATGAAACAGAGGCATCAGAGTTTAGTGTCCAAAATTTCATTGCTGGCCAGTCGTGGTTGCCGGATACAGAGGTCCCATTCGCTCCTGGACTTTAG 1395 43.01 MTEFKKMVIQFAMERALNAESYTKDVGSKCRNGKEKAAWADCLKLYQNTILQLNKTLDSSTSCTDFDIQTWLSTALTNLETCRTGFAELNVSDYILPMIMSNNVTRLISNSLAINNASGGGVLGKETYKKGFPSWVSGGDRRLLQSSSIKADIVVAQDGSGNYTTVGAAVEEAGKRKGNGRFVIQVKRGVYEENVEIGSKMKNIMLIGDGMRFTFITGNRSVGGGSTTFNSATVAVTGEGFIARGITFRNTAGPENHQAVALRSGADLSVFYRCAFEGYQDTLYVHSQRQFYKECYIYGTVDFIFGNGAVVLQNCMIYARKPMNGQKNAVTAQGRTDPNQNTGISIHNSRVMATDDLKAVESRVKTYLGRPWKEYSRTVFMKTYLDNLVDPVGWLEWDGEFALNTLYYGEYKNIGPRSSTTQRVNWKGYRVITNETEASEFSVQNFIAGQSWLPDTEVPFAPGL 464
       

Gff information


Chromosome Start End Strand Old_gene Gene Num
5 7629229 7632020 - CcPI632755_05g008840.1 Cco05g0884 178512
       

Annotation information


Select Seq ID Length Analysis Description Start End IPR GO
Cco05g0884 464 SMART PMEI_2 1 114 IPR006501 GO:0004857(InterPro)
Cco05g0884 464 NCBIfam pectinesterase inhibitor domain 3 116 IPR006501 GO:0004857(InterPro)
Cco05g0884 464 SUPERFAMILY Pectin lyase-like 148 462 IPR011050 -
Cco05g0884 464 Gene3D Invertase/pectin methylesterase inhibitor family protein 1 117 IPR035513 -
Cco05g0884 464 SUPERFAMILY Plant invertase/pectin methylesterase inhibitor 3 116 IPR035513 -
Cco05g0884 464 ProSitePatterns Pectinesterase signature 2. 297 306 IPR033131 -
Cco05g0884 464 Pfam Pectinesterase 152 449 IPR000070 GO:0030599(InterPro)|GO:0042545(InterPro)
Cco05g0884 464 PANTHER PECTINESTERASE 4 455 - GO:0030599(PANTHER)|GO:0046910(PANTHER)
Cco05g0884 464 Pfam Plant invertase/pectin methylesterase inhibitor 4 114 IPR006501 GO:0004857(InterPro)
Cco05g0884 464 CDD PMEI-like_3 3 117 - -
Cco05g0884 464 Gene3D - 145 464 IPR012334 -
Cco05g0884 464 FunFam Pectinesterase 146 464 - -
       

Duplication type information


Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Cco01g0498 Cco-Chr1:4847802 Cco05g0884 Cco-Chr5:7629229 7.30E-200 dispersed
Cco01g0669 Cco-Chr1:6941135 Cco05g0884 Cco-Chr5:7629229 4.60E-130 dispersed
Cco02g0057 Cco-Chr2:605782 Cco05g0884 Cco-Chr5:7629229 1.00E-76 dispersed
Cco02g0058 Cco-Chr2:611440 Cco05g0884 Cco-Chr5:7629229 9.80E-84 dispersed
Cco05g0282 Cco-Chr5:2267585 Cco05g0884 Cco-Chr5:7629229 5.00E-110 dispersed
Cco05g0283 Cco-Chr5:2282460 Cco05g0884 Cco-Chr5:7629229 1.10E-155 dispersed
Cco05g0884 Cco-Chr5:7629229 Cco10g0571 Cco-Chr10:7365276 4.40E-156 dispersed
Cco05g0884 Cco-Chr5:7629229 Cco05g0887 Cco-Chr5:7660998 2.20E-06 proximal
       

Pathway information


Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Cco05g0884 K01051 - csv:101211449 858.981