Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Cco05g0898 ATGGAGGAGAAAGAAACCGGAGTTTCTAGGTTTACAGTTACGAATGATGAAGCCCTAGACAGCTTCCAGGTAGCTCCAAGAACAGAAGCCCTAAAATCAACCGGTGAGTCTAAAGTGACGGAGCTCGCGGCAGCTGCTCCACCACCGGGGTTTTCAGCGGCGGCTGATGCACCACCGGCGAGTGTAGCGGTTTCTAGTACTGAAACAAAGAAGAAGAGAGGGAGACCGAGAAAGTACGGACCGGATGGGAAGCGGTCACTGACATTGGCGTTGTCTCCGATGCCGATATCGTCGTCAATTCCACTGACTGGAGAGTTCCCGAATTGGAAACGAGATAACGAGATTTCTCAAGCGATAATCAAGAAGCCGCAGAGATTCGAGTTTGAGAATCCCGGTCAGAGACTTGCATACTCTGTTGGTGCAAATTTTACTCCCCATGTGATCACTGTCAATGCTGGAGAGGACATTACAATGAAGGTTATGTCTTTCTCTCAACAAGAATCCCGGGCTATTTGCATTCTTTCTGCAAATGGTACAATTTCAAATGTTACACTTCGACAGGCAACTTCTTCCGGAGGTACCTTAACGTATGAGGGTCGTTTTGAAATACTTGCATTGACCGGATCATATATGCCTACACAGAATGGAGCTACAAAGAGCAGATGTGGTGGGATGAGCGTCTCGCTTGCGGGTCAAGATGGGCGAGTCGTTGGCGGTGGACTTGCTGGTTTGTTGGTAGCTGCTGGTCCTGTGCAAGTTGTGGTAGGCAGTTTCCTTCCAGGTCACCAGCAAGAACAGAAGCCAAAAAAGCCTAGAAACGAGTCCACAACCATTTTCTTTCCTCCCGTCAACACTGTCACTGGTGAAGAAATGAAGATAATGTATCCTGGCGGTAACAAGCCTATTCTCACGACACCGTCCTATCAAGAACAACATAATCCACCGTCCCCTAGCCCGGTGACAGGCTTCAAAATCTCCTCCACTGACAACTTACCTCTATCTGATCAAGAACCAAAAACACAAAGTCAATCAAACTGTGAGGGTAGTGTTGAGGTGGGTTATAGGTTTTGGGATGACCAAAACCAGAAAATACTCATAATTAGAAATGCGATCTTCAATGAGGAAGTTTTGTACAAACACATAACAATATTTGACTCAAGGACAGATAAAAGTAAAGAAGAGAAGATTCAATATGTAAGTCTTCCTGAGGCTAAGACTAGATCTAAGGATCCAATTGTAGAATCTAAGGAACCAGCTGCAGAATCTAAACCAATTGTTGAACTTAATGAAGTTCAAAGAAAGTCACCTGCAACAATCAGAAGGTCTAGTAAGACTATCAAACCACCACAGAGATTTAAACTACAAGATTATGTTGATGGAGATAAGAAAAGTAGTACTATGTATGTTATTACTTTGGGTGATGCTGCTATTAGTTGGATTACTAGACTTTTAAAGCTAGTAGCTCTTTCTACTGTGGAAATCGAGTATGTTGCAAGTATCAAGAAGATATGA 1512 43.92 MEEKETGVSRFTVTNDEALDSFQVAPRTEALKSTGESKVTELAAAAPPPGFSAAADAPPASVAVSSTETKKKRGRPRKYGPDGKRSLTLALSPMPISSSIPLTGEFPNWKRDNEISQAIIKKPQRFEFENPGQRLAYSVGANFTPHVITVNAGEDITMKVMSFSQQESRAICILSANGTISNVTLRQATSSGGTLTYEGRFEILALTGSYMPTQNGATKSRCGGMSVSLAGQDGRVVGGGLAGLLVAAGPVQVVVGSFLPGHQQEQKPKKPRNESTTIFFPPVNTVTGEEMKIMYPGGNKPILTTPSYQEQHNPPSPSPVTGFKISSTDNLPLSDQEPKTQSQSNCEGSVEVGYRFWDDQNQKILIIRNAIFNEEVLYKHITIFDSRTDKSKEEKIQYVSLPEAKTRSKDPIVESKEPAAESKPIVELNEVQRKSPATIRRSSKTIKPPQRFKLQDYVDGDKKSSTMYVITLGDAAISWITRLLKLVALSTVEIEYVASIKKI 503
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
5 7771166 7780693 - CcPI632755_05g008980.1 Cco05g0898 178526
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Cco05g0898 503 FunFam AT-hook motif nuclear-localized protein 1-like 145 276 - -
Cco05g0898 503 Gene3D - 145 274 - -
Cco05g0898 503 MobiDBLite consensus disorder prediction 302 346 - -
Cco05g0898 503 CDD DUF296 144 258 IPR005175 -
Cco05g0898 503 Pfam Plants and Prokaryotes Conserved (PCC) domain 145 258 IPR005175 -
Cco05g0898 503 ProSiteProfiles PPC domain profile profile. 140 283 IPR005175 -
Cco05g0898 503 PANTHER AT-HOOK MOTIF NUCLEAR-LOCALIZED PROTEIN 9 48 318 IPR039605 GO:0003680(InterPro)
Cco05g0898 503 MobiDBLite consensus disorder prediction 29 85 - -
Cco05g0898 503 SUPERFAMILY AF0104/ALDC/Ptd012-like 142 264 - -
Cco05g0898 503 MobiDBLite consensus disorder prediction 298 346 - -
       

Duplication type information

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Cco05g0898 Cco-Chr5:7771166 Cco11g0056 Cco-Chr11:602073 1.50E-64 dispersed
Cco01g0537 Cco-Chr1:5209517 Cco05g0898 Cco-Chr5:7771166 1.30E-89 transposed
Cco05g1599 Cco-Chr5:20970046 Cco05g0898 Cco-Chr5:7771166 5.20E-13 transposed
Cco01g0365 Cco-Chr1:3642339 Cco05g0898 Cco-Chr5:7771166 1.70E-69 wgd
Cco05g0898 Cco-Chr5:7771166 Cco06g0033 Cco-Chr6:328259 2.90E-20 wgd
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Cco05g0898 - - - 0.0