Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Cco05g0916 ATGGCTAATACTCCTCTCAAATGGCTCTGTTTATTGCTGTTTTTTCACTGTTTGATTCTTTCAACCTCTCAGCTTCTGAAAACTTATGTTGTTCAAATGGATAAGACTGCAATGCCGGACTCATTTACGGATCATCTTGACTGGTACTCCACAGTGCTAAGCAATGTGGTTGTTAATCTTGAAAGAGAAGGTAATGGGGGAGGAGGTGAAGAGAGGATTATTTACAGTTACCAGAATGTTTTCCATGGAGTTGCAGCTCGATTGAGTGAAGAAGAGGCCGAGAAGCTCGAGGAAGAGGATGGGGTATTGGCCATTTTTCCGGAGACGAAGTATGAGCTTCATACTACCAGAAGCCCCAAATTTCTTGGGCTTGAACCAGCTGATAGCAACAGCGCCTGGTCTCAGCAAGTTGCAGACCATGATGTGATTGTTGGAGTTTTGGACACTGGGATTTGGCCGGAGAGTGAGAGCTTCAACGACGTCGGAATGTCGCCGGTGCCGGCGCATTGGAAAGGGGAATGTGAAACAGGGCGAGGGTTCACGAAACAGAATTGTAATAGAAAGATCGTTGGGGCCAGAGTGTTCTACCATGGGTATCAAGCTGCAACTGGGAAATTTAACGAGCAGTTGGAGTACAGATCGCCGAGGGATCAAGATGGGCATGGAACTCATACGGCAGCCACTGTCGCTGGCTCTCCAGTGCCCGGCGCGAGCCTCCTTGGTTATGCATATGGAACGGCCAGAGGAATGGCGCCCGGAGCTAGAATTGCGGCTTACAAAGTTTGTTGGGTTGGTGGCTGTTTTAGCTCCGACATATTGTCGGCTGTTGACAGAGCTGTGGCCGACGGAGTAAATGTTCTGTCCATCTCTTTGGGAGGTGGGGTCTCTTCTTACTATCGCGATAGTCTCTCCGTTGCAGCATTTGGAGCAATGGAGATGGGCGTGTTTGTCTCCTGCTCGGCCGGAAATGGAGGGCCGGACCCTGTCAGTCTCACAAATGTATCACCATGGATAACCACCGTCGGGGCTAGCACAATGGACAGAGATTTCCCGGCCATTGTCAAGCTCGGTAATGGCAGAACAGTCACCGGCGTTTCACTTTACAGAGGAAGAATCACAATTCCAGAAAACAAGCAATTCCCAGTTGTATACATGGGGAGTAACTCGAGCAGTCCTGATCCGAGCTCCCTGTGTTTAGAAGGAACTTTAGATCCTCATTTCGTGGCCGGAAAAATTGTGATATGCGATCGCGGAATAAGCCCTCGGGTTCAGAAGGGTGTGGTGGTGAAAAATGCAGGTGGGGTTGGGATGATTCTGTCTAACACGGCGGCGAATGGGGAAGAACTTGTTGCCGACTGCCATTTGGTACCGGCAGTTGCCGTCGGGGAAAGAGAAGGCAAAGCAATTAAGCAGTATGCATTAACGAATCGAAAAGCGACGGCGACTTTAGGATTTTTAGGGACAAGATTGGGGGTAAAACCTTCGCCGGTGGTGGCGGCGTTTTCATCCAGAGGACCAAATTTCCTCACACTGGAGATCCTCAAGCCCGATCTGGTGGCTCCTGGCGTTAACATCCTCGCCGCTTGGACCGGAAAAACAGGGCCGTCGAGCTTGACGACGGATACAAGAAGGGTAAAATTCAACATTCTTTCAGGAACTTCAATGTCTTGCCCTCACGTCAGTGGCGTAGCGGCTCTGATCAAATCGAAGCATCCCGATTGGAGCCCGTCGGCGATCAAATCGGCACTAATGACCACCGCTTACGTCCACGACAACACCTATAAACCTCTCAAAGACTCCTCTGCTGCATCACCGTCAAGTCCGTACGACCATGGCGCCGGCCACATAAACCCTAGAAAAGCCCTCGATCCTGGTTTGGTTTACGAAATTCAGCCGCAAGATTACTTCGACTTCCTATGTACGCAGGATTTAACCCCTACACAGCTTAAAGTGTTCTCCAAATATTCGAACAGATCATGCCATCGTCTTCTCCCCAACCCTGGAGACTTGAATTATCCGGCTATCTCCGCTGTTTTTCCTGAGAAAACCTCCGTCACTTCCCTGACCCTTCACAGAATCGTCACCAACGTCGGCCCTGCAACCTCCAGTTATCGTGCAGTGGTGACTCCGTTCAACGGCGCCGCCGTGAAAGTTGAGCCGGAGAGTCTGAACTTCACAAGAAGGTATGAGAAGCTTTCTTACAGAATCACATTTCTGACGAAGAAGAGACAGAGTATCCCGGAATTTGGAGGGCTAATTTGGAAGGACGGAACACATAAAGTGAGAAGCCCCATTGCGATCACTTGGTTGTCGTTTGTTTGA 2322 49.91 MANTPLKWLCLLLFFHCLILSTSQLLKTYVVQMDKTAMPDSFTDHLDWYSTVLSNVVVNLEREGNGGGGEERIIYSYQNVFHGVAARLSEEEAEKLEEEDGVLAIFPETKYELHTTRSPKFLGLEPADSNSAWSQQVADHDVIVGVLDTGIWPESESFNDVGMSPVPAHWKGECETGRGFTKQNCNRKIVGARVFYHGYQAATGKFNEQLEYRSPRDQDGHGTHTAATVAGSPVPGASLLGYAYGTARGMAPGARIAAYKVCWVGGCFSSDILSAVDRAVADGVNVLSISLGGGVSSYYRDSLSVAAFGAMEMGVFVSCSAGNGGPDPVSLTNVSPWITTVGASTMDRDFPAIVKLGNGRTVTGVSLYRGRITIPENKQFPVVYMGSNSSSPDPSSLCLEGTLDPHFVAGKIVICDRGISPRVQKGVVVKNAGGVGMILSNTAANGEELVADCHLVPAVAVGEREGKAIKQYALTNRKATATLGFLGTRLGVKPSPVVAAFSSRGPNFLTLEILKPDLVAPGVNILAAWTGKTGPSSLTTDTRRVKFNILSGTSMSCPHVSGVAALIKSKHPDWSPSAIKSALMTTAYVHDNTYKPLKDSSAASPSSPYDHGAGHINPRKALDPGLVYEIQPQDYFDFLCTQDLTPTQLKVFSKYSNRSCHRLLPNPGDLNYPAISAVFPEKTSVTSLTLHRIVTNVGPATSSYRAVVTPFNGAAVKVEPESLNFTRRYEKLSYRITFLTKKRQSIPEFGGLIWKDGTHKVRSPIAITWLSFV 773
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
5 7916287 7918608 + CcPI632755_05g009160.1 Cco05g0916 178544

Annotation

Select Seq ID Length Analysis Description Start End IPR GO
Cco05g0916 773 CDD PA_subtilisin_like 354 483 - -
Cco05g0916 773 Pfam PA domain 381 469 IPR003137 -
Cco05g0916 773 Gene3D - 639 770 - -
Cco05g0916 773 Pfam Peptidase inhibitor I9 28 114 IPR010259 -
Cco05g0916 773 FunFam Subtilisin-like protease SBT1.5 141 363 - -
Cco05g0916 773 FunFam subtilisin-like protease SBT1.5 347 490 - -
Cco05g0916 773 SUPERFAMILY Subtilisin-like 113 626 IPR036852 GO:0004252(InterPro)|GO:0006508(InterPro)
Cco05g0916 773 FunFam Subtilisin-like protease SBT1.9 17 114 - -
Cco05g0916 773 Gene3D - 347 491 - -
Cco05g0916 773 CDD Peptidases_S8_3 111 588 IPR034197 -
Cco05g0916 773 ProSitePatterns Serine proteases, subtilase family, serine active site. 552 562 IPR023828 -
Cco05g0916 773 Gene3D Peptidase S8/S53 domain 141 635 IPR036852 GO:0004252(InterPro)|GO:0006508(InterPro)
Cco05g0916 773 Gene3D Peptidase S8 propeptide/proteinase inhibitor I9 19 114 IPR037045 -
Cco05g0916 773 PANTHER PROPROTEIN CONVERTASE SUBTILISIN/KEXIN 28 765 IPR045051 -
Cco05g0916 773 PRINTS Subtilisin serine protease family (S8) signature 139 158 IPR015500 -
Cco05g0916 773 PRINTS Subtilisin serine protease family (S8) signature 551 567 IPR015500 -
Cco05g0916 773 PRINTS Subtilisin serine protease family (S8) signature 217 230 IPR015500 -
Cco05g0916 773 Pfam Subtilase family 140 595 IPR000209 GO:0006508(InterPro)|GO:0008236(InterPro)
Cco05g0916 773 ProSiteProfiles Serine proteases, subtilase domain profile. 110 622 - -
Cco05g0916 773 Pfam Fibronectin type-III domain 669 767 IPR041469 -
       

Pathway

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Cco05g0916 - - - - 0.0
       

Dupl-types

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Cco04g1491 Cco-Chr4:30320425 Cco05g0916 Cco-Chr5:7916287 1.10E-231 dispersed
Cco05g0916 Cco-Chr5:7916287 Cco08g1821 Cco-Chr8:29245173 3.30E-233 dispersed
Cco01g1038 Cco-Chr1:13424511 Cco05g0916 Cco-Chr5:7916287 1.40E-82 transposed
Cco04g2337 Cco-Chr4:36816173 Cco05g0916 Cco-Chr5:7916287 3.90E-86 transposed
Cco09g0134 Cco-Chr9:1183102 Cco05g0916 Cco-Chr5:7916287 5.70E-212 transposed
Cco01g0344 Cco-Chr1:3453942 Cco05g0916 Cco-Chr5:7916287 6.70E-149 wgd
       

Deco-Alignment

Select Vvi1 Blo1 Blo2 Bda1 Bda2 Bpe1 Bpe2 Bma1 Bma2 Cmo1 Cmo2 Cma1 Cma2 Car1 Car2 Sed1 Cpe1 Cpe2 Bhi1 Tan1 Cmetu1 Lac1 Hepe1 Mch1 Lcy1 Cla1 Cam1 Cec1 Cco1 Clacu1 Cmu1 Cre1 Cone1 Cone2 Cone3 Cone4 Lsi1 Csa1 Chy1 Cme1 Blo3 Blo4 Bda3 Bda4 Bpe3 Bpe4 Bma3 Bma4 Sed2 Cmo3 Cmo4 Cma3 Cma4 Car3 Car4 Cpe3 Cpe4 Bhi2 Tan2 Cmetu2 Lac2 Hepe2 Mch2 Lcy2 Cla2 Cam2 Cec2 Cco2 Clacu2 Cmu2 Cre2 Lsi2 Csa2 Chy2 Cme2
Vvi16g533 . . . . Bpe03g00102 . . Bma14g02104 Cmo16g00173 Cmo18g01221 . . . . . . Cpe14g00140 Bhi01g01399 . . . Hepe07g0211 Mch10g0213 . . . . . . . . Cone1ag1115 Cone5ag0823 . . Lsi05g01289 . . Cme06g00938 Blo07g00459 Blo09g00124 . . . . . . . . . . . Car16g00144 . Cpe09g00128 . . . . . . . . Cla05g00825 Cam05g0909 Cec05g0912 Cco05g0916 Clacu05g0898 Cmu05g0855 Cre05g0942 . Csa03g01651 Chy06g00888 .
       

Syn-Families

Select Gene Event_type S_start S_end Function Ath_gene Identity(%) E-value Score
Cco07g0708 . 39 788 Subtilisin-like Serine Gene Family AT1G01900 56.1 4.5e-230 794.7
Cco07g0706 . 37 797 Subtilisin-like Serine Gene Family AT1G01900 54.4 2.9e-229 792.0
Cco07g0138 . 12 769 Subtilisin-like Serine Gene Family AT1G04110 67.1 3.6e-312 1067.4
Cco05g1784 . 3 762 Subtilisin-like Serine Gene Family AT1G20150 53.2 3.4e-225 778.5
Cco05g1784 . 6 505 Subtilisin-like Serine Gene Family AT1G20160 61.3 6.4e-170 594.3
Cco08g1223 . 207 664 Subtilisin-like Serine Gene Family AT1G20160 50.3 3.6e-120 429.1
Cco04g2337 . 9 837 Subtilisin-like Serine Gene Family AT1G30600 65.3 5.9e-313 1070.1
Cco07g0867 . 91 810 Subtilisin-like Serine Gene Family AT1G32940 54.8 1.0e-228 790.0
Cco07g0867 . 91 810 Subtilisin-like Serine Gene Family AT1G32950 54.2 1.0e-223 773.5
Cco07g0867 . 38 810 Subtilisin-like Serine Gene Family AT1G32960 53.1 8.3e-232 800.4
Cco01g1038 . 14 763 Subtilisin-like Serine Gene Family AT1G62340 58.6 4.2e-250 861.3
Cco02g0322 . 2 736 Subtilisin-like Serine Gene Family AT2G04160 63.1 7.6e-278 953.4
Cco10g0393 . 26 764 Subtilisin-like Serine Gene Family AT2G04160 58.3 1.5e-249 859.4
Cco01g1247 . 21 769 Subtilisin-like Serine Gene Family AT2G04160 53.8 7.0e-231 797.3
Cco10g0395 . 11 679 Subtilisin-like Serine Gene Family AT2G04160 57.8 3.2e-228 788.5
Cco10g0394 . 26 727 Subtilisin-like Serine Gene Family AT2G04160 50.8 5.7e-209 724.5
Cco10g0396 . 584 1081 Subtilisin-like Serine Gene Family AT2G04160 57.8 5.6e-172 601.7
Cco03g1557 . 26 765 Subtilisin-like Serine Gene Family AT2G05920 73.5 0.0e+00 1099.3
Cco04g1491 . 22 761 Subtilisin-like Serine Gene Family AT2G05920 55.7 3.6e-232 801.6
Cco08g1821 . 38 773 Subtilisin-like Serine Gene Family AT2G05920 55.9 4.4e-222 768.1
Cco05g0916 . 27 772 Subtilisin-like Serine Gene Family AT2G05920 52.2 2.1e-216 749.2
Cco09g0103 . 30 760 Subtilisin-like Serine Gene Family AT2G05920 53.7 4.0e-215 745.0
Cco02g1285 . 31 764 Subtilisin-like Serine Gene Family AT2G05920 51.5 2.4e-207 719.2
Cco09g0134 . 28 781 Subtilisin-like Serine Gene Family AT2G05920 51.3 5.1e-202 701.4
Cco11g1214 . 30 831 Subtilisin-like Serine Gene Family AT2G19170 81.8 0.0e+00 1338.6
Cco09g0103 . 8 767 Subtilisin-like Serine Gene Family AT3G14067 64.0 3.5e-283 971.1
Cco04g1491 . 9 761 Subtilisin-like Serine Gene Family AT3G14067 54.1 9.8e-225 776.9
Cco03g1557 . 25 763 Subtilisin-like Serine Gene Family AT3G14067 54.1 1.5e-220 763.1
Cco08g1821 . 9 773 Subtilisin-like Serine Gene Family AT3G14067 51.0 1.8e-210 729.6
Cco09g0134 . 31 789 Subtilisin-like Serine Gene Family AT3G14240 77.3 0.0e+00 1209.5
Cco02g1285 . 32 772 Subtilisin-like Serine Gene Family AT3G14240 58.8 7.7e-246 847.0
Cco04g1491 . 27 757 Subtilisin-like Serine Gene Family AT3G14240 52.6 3.4e-217 751.9
Cco09g0103 . 29 758 Subtilisin-like Serine Gene Family AT3G14240 51.7 5.0e-213 738.0
Cco05g0916 . 28 768 Subtilisin-like Serine Gene Family AT3G14240 50.1 1.1e-210 730.3
Cco03g1557 . 29 759 Subtilisin-like Serine Gene Family AT3G14240 51.3 2.3e-210 729.2
Cco08g1821 . 40 772 Subtilisin-like Serine Gene Family AT3G14240 50.8 8.1e-203 704.1
Cco07g0711 . 12 570 Subtilisin-like Serine Gene Family AT4G00230 60.8 8.7e-197 683.7
Cco07g0709 . 9 568 Subtilisin-like Serine Gene Family AT4G00230 57.7 5.8e-185 644.4
Cco04g1202 . 1 540 Subtilisin-like Serine Gene Family AT4G00230 50.7 1.5e-143 506.9
Cco07g0867 . 91 808 Subtilisin-like Serine Gene Family AT4G10510 53.3 3.8e-223 771.5
Cco07g0867 . 68 808 Subtilisin-like Serine Gene Family AT4G10520 54.7 5.8e-230 794.3
Cco07g0867 . 68 808 Subtilisin-like Serine Gene Family AT4G10530 52.4 2.5e-217 752.3
Cco07g0867 . 67 810 Subtilisin-like Serine Gene Family AT4G10540 54.5 9.4e-236 813.5
Cco07g0867 . 91 810 Subtilisin-like Serine Gene Family AT4G10550 53.5 5.0e-223 771.2
Cco04g2337 . 9 837 Subtilisin-like Serine Gene Family AT4G20430 68.1 0.0e+00 1137.1
Cco03g0517 . 39 311 Subtilisin-like Serine Gene Family AT4G21320 78.8 2.0e-127 452.2
Cco07g0867 . 63 807 Subtilisin-like Serine Gene Family AT4G21650 50.1 8.5e-205 710.7
Cco01g1380 . 61 789 Subtilisin-like Serine Gene Family AT4G26330 55.8 8.1e-237 817.0
Cco11g1214 . 25 831 Subtilisin-like Serine Gene Family AT4G30020 81.5 0.0e+00 1334.3
Cco02g1285 . 25 772 Subtilisin-like Serine Gene Family AT4G34980 74.9 0.0e+00 1150.2
Cco09g0134 . 16 789 Subtilisin-like Serine Gene Family AT4G34980 53.2 3.8e-229 791.6
Cco04g1491 . 1 757 Subtilisin-like Serine Gene Family AT4G34980 51.5 1.6e-211 733.0
Cco05g0916 . 9 771 Subtilisin-like Serine Gene Family AT4G34980 50.6 8.8e-210 727.2
Cco03g1557 . 25 759 Subtilisin-like Serine Gene Family AT4G34980 50.8 1.8e-207 719.5
Cco04g1202 . 14 527 Subtilisin-like Serine Gene Family AT5G03620 60.6 1.0e-178 623.6
Cco10g1903 . 927 1439 Subtilisin-like Serine Gene Family AT5G03620 55.5 3.0e-162 568.9
Cco07g0711 . 8 568 Subtilisin-like Serine Gene Family AT5G03620 50.6 1.5e-145 513.5
Cco07g0709 . 5 566 Subtilisin-like Serine Gene Family AT5G03620 50.8 2.8e-144 509.2
Cco07g0369 . 5 533 Subtilisin-like Serine Gene Family AT5G03620 51.9 6.3e-144 508.1
Cco06g0956 . 291 1050 Subtilisin-like Serine Gene Family AT5G19660 80.0 0.0e+00 1272.3
Cco04g2337 . 33 611 Subtilisin-like Serine Gene Family AT5G44530 70.8 9.9e-244 839.7
Cco04g2195 . 77 779 Subtilisin-like Serine Gene Family AT5G45640 52.6 4.8e-200 694.9
Cco04g2195 . 23 779 Subtilisin-like Serine Gene Family AT5G45650 58.0 2.0e-249 859.0
Cco05g0916 . 27 770 Subtilisin-like Serine Gene Family AT5G51750 73.8 0.0e+00 1156.0
Cco04g1491 . 13 761 Subtilisin-like Serine Gene Family AT5G51750 52.2 2.7e-230 795.4
Cco08g1821 . 16 773 Subtilisin-like Serine Gene Family AT5G51750 52.5 6.8e-226 780.8
Cco03g1557 . 24 763 Subtilisin-like Serine Gene Family AT5G51750 51.3 7.3e-220 760.8
Cco05g2449 . 37 734 Subtilisin-like Serine Gene Family AT5G59190 50.5 9.1e-190 660.6
Cco01g1247 . 13 770 Subtilisin-like Serine Gene Family AT5G59810 59.5 1.9e-260 895.6
Cco02g0322 . 15 736 Subtilisin-like Serine Gene Family AT5G59810 59.7 3.5e-254 874.8
Cco10g0393 . 1 764 Subtilisin-like Serine Gene Family AT5G59810 55.1 2.0e-233 805.8
Cco10g0395 . 11 679 Subtilisin-like Serine Gene Family AT5G59810 55.8 2.1e-214 742.7
Cco10g0394 . 1 727 Subtilisin-like Serine Gene Family AT5G59810 51.9 1.5e-212 736.5
Cco10g0396 . 587 1081 Subtilisin-like Serine Gene Family AT5G59810 62.7 1.9e-175 613.2
Cco04g1491 . 8 762 Subtilisin-like Serine Gene Family AT5G67360 72.2 0.0e+00 1104.4
Cco08g1821 . 14 774 Subtilisin-like Serine Gene Family AT5G67360 64.7 8.5e-290 993.0
Cco03g1557 . 29 764 Subtilisin-like Serine Gene Family AT5G67360 56.3 1.6e-232 802.7
Cco09g0103 . 8 759 Subtilisin-like Serine Gene Family AT5G67360 56.1 1.5e-230 796.2
Cco05g0916 . 11 769 Subtilisin-like Serine Gene Family AT5G67360 53.9 8.4e-229 790.4
Cco02g1285 . 12 767 Subtilisin-like Serine Gene Family AT5G67360 51.4 1.0e-210 730.3
Cco09g0134 . 9 784 Subtilisin-like Serine Gene Family AT5G67360 51.4 8.7e-210 727.2
       

Syn-Orthogroups

Select Orthogroup Bda Bhi Blo Bma Bpe Cam Car Cco Cec Chy Cla Clacu Cma Cme Cmetu Cmo Cmu Cone Cpe Cre Csa HCH Hepe Lac Lcy Lsi Mch Sed Tan Vvi Total
OG0007662 1 1 2 1 1 1 2 1 1 1 1 1 1 1 1 2 1 2 2 1 1 1 1 2 1 1 1 1 1 1 36