Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Cco05g0917 ATGACGGAGGTTTACACTAGAATGCCAAGCGAAGATGATGAAGATTCGCCGGCCAAATGTCGAGAGCGCCGGCGCCGTAGAATAGAGATGAGACGGTTAGCAACAGTATCGTCGGCGAATCCCTCGCCCTCCACCACTCATCACCACCGGAAAGAGAATCAAACTGGTACCTCCGGTTTTGAGAAGAAGCGTGGTCGGAAGACGGACGGCGATGGTAATCCGGAGATTTCATCGTCTTCGTCATCGGCGGAGGAAGTGAAGACTGTAAGAACTTCACCATCTGTACCTCAGCCGGTTTTCGGGATGATGTCGGTGTCCGGGAGGTCACGTGAGATGGAGGATGCAGTATCGGTGAGCACGTGCGTTTTAGGTTCAGAAAATTTCCGATGGCAACTCGTGCATTTCTTCGCCGTCTACGATGGACATGGAGGCCCTCACGTGGCAGCGCTATGTAGGGAGAAGATGCACGTGTTCGTACAGGAGGAATTTTCGCGCGTGATGTGCACGCGCGAGGAAGGTGAGAGCGGCGGCGGTGGAAGCAGCGCGGGGGAGGAGGAGGAGGCGACTTGGAGAAGAGTGATGCAGCGAAGCTTTGAAAGAATGGACGAAATGGCACTCAGTACTTGTGCCTGTGGGAGCGTCGGAGGCCAGTGTGGGTGCCATCCGATGGAGGTGGCTCTCGGCGGCTCCACCGCCGTCGTCGCCGTGCTCACGCCGGATCACATAATCGTCGCCAACTGCGGCGATTCACGCGCTGTCCTTTGCCGAGGAGGAAGGGCCATTCCGCTTTCTAATGATCACAAGCCTGATAGAAATGATGAACTAGCAAGGATTGAAGCAGCTGGAGGACGGGTGATTTTCGTAAATGGAGCTCGGGTTGAAGGAATCCTTGCAATGTCCCGGGCAATAGGAGACAAGTATCTCAAGTCAGTTGTAATATCAGAGCCTGAAATTACATTTACTAGAAGAGAATCAGATGATGAATGTTTAATACTTGCAAGTGATGGTTTGTGGGATGTTCTTTCAAGTGAATTGGCTTGTGAGGTAGCTCGTGAATGTCTCCAAGAAGGAGCAGCGGCTGCTGCTACTACAATAGACCTCAATGCCACACCTCAAATTGAAGAAGAAGGGGCTGGAACTTCATATCCCTCTCGGAGTGCATTGGCTGCTGCATTGCTTACTCGTCTTGCTTTAGGGCGGAAAAGCACGGACAACATCAGTGTCATAGTTATTGATCTGAAGAGGAGCTGA 1251 52.36 MTEVYTRMPSEDDEDSPAKCRERRRRRIEMRRLATVSSANPSPSTTHHHRKENQTGTSGFEKKRGRKTDGDGNPEISSSSSSAEEVKTVRTSPSVPQPVFGMMSVSGRSREMEDAVSVSTCVLGSENFRWQLVHFFAVYDGHGGPHVAALCREKMHVFVQEEFSRVMCTREEGESGGGGSSAGEEEEATWRRVMQRSFERMDEMALSTCACGSVGGQCGCHPMEVALGGSTAVVAVLTPDHIIVANCGDSRAVLCRGGRAIPLSNDHKPDRNDELARIEAAGGRVIFVNGARVEGILAMSRAIGDKYLKSVVISEPEITFTRRESDDECLILASDGLWDVLSSELACEVARECLQEGAAAAATTIDLNATPQIEEEGAGTSYPSRSALAAALLTRLALGRKSTDNISVIVIDLKRS 416
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
5 7929035 7935250 + CcPI632755_05g009170.1 Cco05g0917 178545
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Cco05g0917 416 MobiDBLite consensus disorder prediction 1 100 - -
Cco05g0917 416 MobiDBLite consensus disorder prediction 72 99 - -
Cco05g0917 416 SUPERFAMILY PP2C-like 90 414 IPR036457 -
Cco05g0917 416 SMART PP2C_4 89 411 IPR001932 -
Cco05g0917 416 Pfam Protein phosphatase 2C 100 365 IPR001932 -
Cco05g0917 416 PANTHER PROTEIN PHOSPHATASE 59 412 IPR015655 GO:0004722(InterPro)|GO:0004722(PANTHER)|GO:0005634(PANTHER)|GO:0006470(InterPro)|GO:0035970(PANTHER)
Cco05g0917 416 MobiDBLite consensus disorder prediction 45 71 - -
Cco05g0917 416 CDD PP2Cc 99 413 IPR001932 -
Cco05g0917 416 MobiDBLite consensus disorder prediction 1 23 - -
Cco05g0917 416 FunFam Protein phosphatase 2C 50 97 416 - -
Cco05g0917 416 ProSitePatterns PPM-type phosphatase domain signature. 135 143 IPR000222 GO:0043169(InterPro)
Cco05g0917 416 Gene3D - 91 416 IPR036457 -
Cco05g0917 416 ProSiteProfiles PPM-type phosphatase domain profile. 99 413 IPR001932 -
       

Duplication type information

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Cco05g0917 Cco-Chr5:7929035 Cco07g1464 Cco-Chr7:28756270 1.50E-62 dispersed
Cco05g0917 Cco-Chr5:7929035 Cco03g0125 Cco-Chr3:1230429 1.60E-77 transposed
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Cco05g0917 K14497 - csv:101206634 691.419