Gene search
Sequence information

Select | Gene | Cds | Cds_length | GC_content | Pep | Pep_length |
---|---|---|---|---|---|---|
Cco05g0917 | ATGACGGAGGTTTACACTAGAATGCCAAGCGAAGATGATGAAGATTCGCCGGCCAAATGTCGAGAGCGCCGGCGCCGTAGAATAGAGATGAGACGGTTAGCAACAGTATCGTCGGCGAATCCCTCGCCCTCCACCACTCATCACCACCGGAAAGAGAATCAAACTGGTACCTCCGGTTTTGAGAAGAAGCGTGGTCGGAAGACGGACGGCGATGGTAATCCGGAGATTTCATCGTCTTCGTCATCGGCGGAGGAAGTGAAGACTGTAAGAACTTCACCATCTGTACCTCAGCCGGTTTTCGGGATGATGTCGGTGTCCGGGAGGTCACGTGAGATGGAGGATGCAGTATCGGTGAGCACGTGCGTTTTAGGTTCAGAAAATTTCCGATGGCAACTCGTGCATTTCTTCGCCGTCTACGATGGACATGGAGGCCCTCACGTGGCAGCGCTATGTAGGGAGAAGATGCACGTGTTCGTACAGGAGGAATTTTCGCGCGTGATGTGCACGCGCGAGGAAGGTGAGAGCGGCGGCGGTGGAAGCAGCGCGGGGGAGGAGGAGGAGGCGACTTGGAGAAGAGTGATGCAGCGAAGCTTTGAAAGAATGGACGAAATGGCACTCAGTACTTGTGCCTGTGGGAGCGTCGGAGGCCAGTGTGGGTGCCATCCGATGGAGGTGGCTCTCGGCGGCTCCACCGCCGTCGTCGCCGTGCTCACGCCGGATCACATAATCGTCGCCAACTGCGGCGATTCACGCGCTGTCCTTTGCCGAGGAGGAAGGGCCATTCCGCTTTCTAATGATCACAAGCCTGATAGAAATGATGAACTAGCAAGGATTGAAGCAGCTGGAGGACGGGTGATTTTCGTAAATGGAGCTCGGGTTGAAGGAATCCTTGCAATGTCCCGGGCAATAGGAGACAAGTATCTCAAGTCAGTTGTAATATCAGAGCCTGAAATTACATTTACTAGAAGAGAATCAGATGATGAATGTTTAATACTTGCAAGTGATGGTTTGTGGGATGTTCTTTCAAGTGAATTGGCTTGTGAGGTAGCTCGTGAATGTCTCCAAGAAGGAGCAGCGGCTGCTGCTACTACAATAGACCTCAATGCCACACCTCAAATTGAAGAAGAAGGGGCTGGAACTTCATATCCCTCTCGGAGTGCATTGGCTGCTGCATTGCTTACTCGTCTTGCTTTAGGGCGGAAAAGCACGGACAACATCAGTGTCATAGTTATTGATCTGAAGAGGAGCTGA | 1251 | 52.36 | MTEVYTRMPSEDDEDSPAKCRERRRRRIEMRRLATVSSANPSPSTTHHHRKENQTGTSGFEKKRGRKTDGDGNPEISSSSSSAEEVKTVRTSPSVPQPVFGMMSVSGRSREMEDAVSVSTCVLGSENFRWQLVHFFAVYDGHGGPHVAALCREKMHVFVQEEFSRVMCTREEGESGGGGSSAGEEEEATWRRVMQRSFERMDEMALSTCACGSVGGQCGCHPMEVALGGSTAVVAVLTPDHIIVANCGDSRAVLCRGGRAIPLSNDHKPDRNDELARIEAAGGRVIFVNGARVEGILAMSRAIGDKYLKSVVISEPEITFTRRESDDECLILASDGLWDVLSSELACEVARECLQEGAAAAATTIDLNATPQIEEEGAGTSYPSRSALAAALLTRLALGRKSTDNISVIVIDLKRS | 416 |
Gff information

Chromosome | Start | End | Strand | Old_gene | Gene | Num |
---|---|---|---|---|---|---|
5 | 7929035 | 7935250 | + | CcPI632755_05g009170.1 | Cco05g0917 | 178545 |
Annotation information

Select | Seq ID | Length | Analysis | Description | Start | End | IPR | GO |
---|---|---|---|---|---|---|---|---|
Cco05g0917 | 416 | MobiDBLite | consensus disorder prediction | 1 | 100 | - | - | |
Cco05g0917 | 416 | MobiDBLite | consensus disorder prediction | 72 | 99 | - | - | |
Cco05g0917 | 416 | SUPERFAMILY | PP2C-like | 90 | 414 | IPR036457 | - | |
Cco05g0917 | 416 | SMART | PP2C_4 | 89 | 411 | IPR001932 | - | |
Cco05g0917 | 416 | Pfam | Protein phosphatase 2C | 100 | 365 | IPR001932 | - | |
Cco05g0917 | 416 | PANTHER | PROTEIN PHOSPHATASE | 59 | 412 | IPR015655 | GO:0004722(InterPro)|GO:0004722(PANTHER)|GO:0005634(PANTHER)|GO:0006470(InterPro)|GO:0035970(PANTHER) | |
Cco05g0917 | 416 | MobiDBLite | consensus disorder prediction | 45 | 71 | - | - | |
Cco05g0917 | 416 | CDD | PP2Cc | 99 | 413 | IPR001932 | - | |
Cco05g0917 | 416 | MobiDBLite | consensus disorder prediction | 1 | 23 | - | - | |
Cco05g0917 | 416 | FunFam | Protein phosphatase 2C 50 | 97 | 416 | - | - | |
Cco05g0917 | 416 | ProSitePatterns | PPM-type phosphatase domain signature. | 135 | 143 | IPR000222 | GO:0043169(InterPro) | |
Cco05g0917 | 416 | Gene3D | - | 91 | 416 | IPR036457 | - | |
Cco05g0917 | 416 | ProSiteProfiles | PPM-type phosphatase domain profile. | 99 | 413 | IPR001932 | - |
Duplication type information

Select | Gene1 | Location1 | Gene2 | Location2 | E-value | Duplicated-type |
---|---|---|---|---|---|---|
Cco05g0917 | Cco-Chr5:7929035 | Cco07g1464 | Cco-Chr7:28756270 | 1.50E-62 | dispersed | |
Cco05g0917 | Cco-Chr5:7929035 | Cco03g0125 | Cco-Chr3:1230429 | 1.60E-77 | transposed |
Pathway information

Select | Query | KO | Definition | Second KO | KEGG Genes ID | GHOSTX Score |
---|---|---|---|---|---|---|
Cco05g0917 | K14497 | - | csv:101206634 | 691.419 |