Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Cco05g0921 ATGGGAAGGGGAAAAGTAGTGCTTGAGAGAATAGAGAACAAAGTGAATCGTCAAGTTACCTTCTCAAAACGAAGAAATGGGTTATTGAAGAAGGCCTGTGAGCTCTCTGTGCTCTGTGATGTTGATGTTGCTCTCATCGTTTTCTCTAGTCGTGGAAAGCTCTTTGAATTTGGCAGCATTGACATGAACAAGATCCTTGAGAGATATCACCAGCGATGTTACAGCTCTGGATCAAGCACCAATCTTGATGAGAGTGACATACAGATAGAGGAAGTGTCAAAGCTGAGAGCCAAATATGAGTCTCTTCAGCGTTCCCATAGGAACTTTCTTGGAGAAGAACTTGAACCACTGCACCTAAAAGAGTTGCATAATCTTGAGAAACAGTTGGACAAAACTCTTTCACACGCTAGACAGCGGAAGGCTGAGATAATGCTTCAAAAATTAGCAGACTTACGCCAAATGGAGCAGGACCTTGGAGATCAAAATACTCAGCTCAAGTCAAAGCTGGAAGAAGAACAACAATGTATGCAAGAAAAGGAAGGTGGCGAAGAAGATCATCCAATGAATTACGAAGTTGTGGGAGCTGACCCAAACATGAACACCACGAGGTACTTTGATCCCCAAGAAGAAGAAGAAGAGGGCAGGGCCATGATAGAAGCTGCGAATAATGACTTAATCCCAGATTGGCTACTTTGA 696 43.1 MGRGKVVLERIENKVNRQVTFSKRRNGLLKKACELSVLCDVDVALIVFSSRGKLFEFGSIDMNKILERYHQRCYSSGSSTNLDESDIQIEEVSKLRAKYESLQRSHRNFLGEELEPLHLKELHNLEKQLDKTLSHARQRKAEIMLQKLADLRQMEQDLGDQNTQLKSKLEEEQQCMQEKEGGEEDHPMNYEVVGADPNMNTTRYFDPQEEEEEGRAMIEAANNDLIPDWLL 231
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
5 7986307 7994864 - CcPI632755_05g009210.1 Cco05g0921 178549
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Cco05g0921 231 MobiDBLite consensus disorder prediction 170 190 - -
Cco05g0921 231 FunFam MADS-box transcription factor MADS-MC 13 85 - -
Cco05g0921 231 Coils Coil 119 139 - -
Cco05g0921 231 Coils Coil 148 171 - -
Cco05g0921 231 Pfam K-box region 89 170 IPR002487 GO:0003700(InterPro)|GO:0005634(InterPro)|GO:0006355(InterPro)
Cco05g0921 231 SMART madsneu2 1 60 IPR002100 GO:0003677(InterPro)|GO:0046983(InterPro)
Cco05g0921 231 PANTHER SERUM RESPONSE FACTOR HOMOLOG 1 186 IPR050142 GO:0000978(PANTHER)|GO:0000981(PANTHER)|GO:0006357(PANTHER)
Cco05g0921 231 PRINTS MADS domain signature 3 23 IPR002100 GO:0003677(InterPro)|GO:0046983(InterPro)
Cco05g0921 231 PRINTS MADS domain signature 38 59 IPR002100 GO:0003677(InterPro)|GO:0046983(InterPro)
Cco05g0921 231 PRINTS MADS domain signature 23 38 IPR002100 GO:0003677(InterPro)|GO:0046983(InterPro)
Cco05g0921 231 Pfam SRF-type transcription factor (DNA-binding and dimerisation domain) 10 57 IPR002100 GO:0003677(InterPro)|GO:0046983(InterPro)
Cco05g0921 231 SUPERFAMILY SRF-like 2 85 IPR036879 GO:0003677(InterPro)|GO:0046983(InterPro)
Cco05g0921 231 CDD MADS_MEF2_like 2 78 IPR033896 GO:0000977(InterPro)|GO:0045944(InterPro)
Cco05g0921 231 ProSiteProfiles MADS-box domain profile. 1 61 IPR002100 GO:0003677(InterPro)|GO:0046983(InterPro)
Cco05g0921 231 ProSiteProfiles K-box domain profile. 85 175 IPR002487 GO:0003700(InterPro)|GO:0005634(InterPro)|GO:0006355(InterPro)
Cco05g0921 231 MobiDBLite consensus disorder prediction 170 213 - -
Cco05g0921 231 Gene3D - 13 81 IPR036879 GO:0003677(InterPro)|GO:0046983(InterPro)
Cco05g0921 231 ProSitePatterns MADS-box domain signature. 3 57 IPR002100 GO:0003677(InterPro)|GO:0046983(InterPro)
       

Duplication type information

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Cco05g0921 Cco-Chr5:7986307 Cco07g1681 Cco-Chr7:30811866 4.00E-41 dispersed
Cco05g0921 Cco-Chr5:7986307 Cco05g0928 Cco-Chr5:8103875 9.30E-30 proximal
Cco10g0766 Cco-Chr10:12390246 Cco05g0921 Cco-Chr5:7986307 2.50E-08 transposed
Cco05g0921 Cco-Chr5:7986307 Cco06g0023 Cco-Chr6:239157 5.10E-52 wgd
       

Transcription factors information

Select Gene Hmm_acc Hmm_name Score E-value Regulatory Factors Family
59265 PF01486 K-box 3.50E-23 No_clan Cco TF
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Cco05g0921 K09264 - csv:101212022 350.132