Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Cco05g0928 ATGGTGAGAGGAAAAGTAGAAATGAAAAGGATAGAAAATGCAACAAGTCGACAGGTAACATTCTCAAAGCGTAGAAATGGACTATTGAAGAAGGCGTATGAACTATCTGTGCTGTGTGATGCTGAAGTTGCAGTCATCATTTTCTCACAAAAAGGCCGTCTCTATGAATTCGCAAGCTCTGAGATGCCAAGGATTGTAGAGCGCTATCGCAAATGTTCAAGAGATGGGAAAAACAGTACCAGATTTGATAGACAACTCCAATTGCAGCAATTAAGACTTGAAGCTGAAAGCATTAATAAGAAGATGGAGTTGTTGCAACTTTCTCAAAGGAAGCTGTTGGGATATGGACTGGATTCTTGTTCCCATGATGAACTTCAAGTACTTGATGCTCAGCTTCAGCGAAGCCTCTTTCAAATTAGGGCCAGAAAGGCTCAGCTGTACAAGGAGCAGATACAACAACTACAAGAAAAGGAAAGACTCCTTTCAGAAGAAAACAGGAAATTGTCTTTAAAGGCCGCAGCTCACGATTGGGCCGCCACGCACGGCTGCCGGAGCAGCTCAAGTTCGGTAGTCGACACCCAATTGGCAATTTGA 594 43.27 MVRGKVEMKRIENATSRQVTFSKRRNGLLKKAYELSVLCDAEVAVIIFSQKGRLYEFASSEMPRIVERYRKCSRDGKNSTRFDRQLQLQQLRLEAESINKKMELLQLSQRKLLGYGLDSCSHDELQVLDAQLQRSLFQIRARKAQLYKEQIQQLQEKERLLSEENRKLSLKAAAHDWAATHGCRSSSSSVVDTQLAI 197
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
5 8103875 8112226 - CcPI632755_05g009280.1 Cco05g0928 178556
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Cco05g0928 197 PANTHER SERUM RESPONSE FACTOR HOMOLOG 1 178 IPR050142 GO:0000978(PANTHER)|GO:0000981(PANTHER)|GO:0006357(PANTHER)
Cco05g0928 197 Pfam SRF-type transcription factor (DNA-binding and dimerisation domain) 10 57 IPR002100 GO:0003677(InterPro)|GO:0046983(InterPro)
Cco05g0928 197 FunFam MADS-box transcription factor MADS-MC 13 85 - -
Cco05g0928 197 ProSiteProfiles K-box domain profile. 88 178 IPR002487 GO:0003700(InterPro)|GO:0005634(InterPro)|GO:0006355(InterPro)
Cco05g0928 197 Pfam K-box region 86 171 IPR002487 GO:0003700(InterPro)|GO:0005634(InterPro)|GO:0006355(InterPro)
Cco05g0928 197 SUPERFAMILY SRF-like 3 85 IPR036879 GO:0003677(InterPro)|GO:0046983(InterPro)
Cco05g0928 197 Coils Coil 88 108 - -
Cco05g0928 197 Coils Coil 144 171 - -
Cco05g0928 197 PRINTS MADS domain signature 23 38 IPR002100 GO:0003677(InterPro)|GO:0046983(InterPro)
Cco05g0928 197 PRINTS MADS domain signature 3 23 IPR002100 GO:0003677(InterPro)|GO:0046983(InterPro)
Cco05g0928 197 PRINTS MADS domain signature 38 59 IPR002100 GO:0003677(InterPro)|GO:0046983(InterPro)
Cco05g0928 197 ProSiteProfiles MADS-box domain profile. 1 61 IPR002100 GO:0003677(InterPro)|GO:0046983(InterPro)
Cco05g0928 197 Gene3D - 14 92 IPR036879 GO:0003677(InterPro)|GO:0046983(InterPro)
Cco05g0928 197 SMART madsneu2 1 60 IPR002100 GO:0003677(InterPro)|GO:0046983(InterPro)
Cco05g0928 197 CDD MADS_MEF2_like 3 78 IPR033896 GO:0000977(InterPro)|GO:0045944(InterPro)
Cco05g0928 197 ProSitePatterns MADS-box domain signature. 3 57 IPR002100 GO:0003677(InterPro)|GO:0046983(InterPro)
       

Duplication type information

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Cco05g0928 Cco-Chr5:8103875 Cco06g0024 Cco-Chr6:245863 2.50E-44 dispersed
Cco05g0921 Cco-Chr5:7986307 Cco05g0928 Cco-Chr5:8103875 9.30E-30 proximal
Cco01g0562 Cco-Chr1:5524583 Cco05g0928 Cco-Chr5:8103875 2.10E-52 transposed
Cco01g0335 Cco-Chr1:3291700 Cco05g0928 Cco-Chr5:8103875 7.30E-45 wgd
Cco05g0237 Cco-Chr5:1844298 Cco05g0928 Cco-Chr5:8103875 4.20E-44 wgd
       

Transcription factors information

Select Gene Hmm_acc Hmm_name Score E-value Regulatory Factors Family
59266 PF01486 K-box 3.20E-21 No_clan Cco TF
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Cco05g0928 - - - 0.0