Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Cco05g0938 ATGGACTCTTTTTCAACTTTTTATGAAGACTACTTCTCCAGTTCCGAGAGTAGTAATTCCCGCCGCCCTATTTTTTCCGATGAGGTTATTATGTTGGCGGCCAGCAATCCCAAGAAGAGGGCCGGCAGGAAGAAGTTTAAGGAAACAAGGCATCCGATCTACAGAGGGGTCAGGAGGAGAAACTCCGGCAAGTGGGTCTGTGAAGTGAGAGAGCCCAATAAGAAGTCAAGGATTTGGCTTGGCACTTTTCCGACGGCGGAGATGGCGGCTCGGGCTCACGACGTCGCCGCCATCGCGCTTAGAGGTCTCACTGCTTGTCTCAATTTCGCCGATTCTGCGTGGCGGCTGCCTGTGCCGGCGTCTGCTGACGCCAGAGATATCCGGAAGGCGGCAGCAGAGGCGGCGGAGGCATTCCGACCGGTTGAGTCATGTGGGTCTTCTGCTGACGACTCAAGGACGGAAAATGAGATAACGGCGGAGACGACGCTGGAAAACGTGAATTACATGGATGAGGAGGCAGTTTTTGGGATGCCAGGTTTTTTGGAAGATATGGCTGCGGGGATGATGTTGCCTCCACCTCAGCATTTTCGTGATGACATGGATTTTTATTCTGACGTGTCATTATGGAGCTATTAA 636 52.36 MDSFSTFYEDYFSSSESSNSRRPIFSDEVIMLAASNPKKRAGRKKFKETRHPIYRGVRRRNSGKWVCEVREPNKKSRIWLGTFPTAEMAARAHDVAAIALRGLTACLNFADSAWRLPVPASADARDIRKAAAEAAEAFRPVESCGSSADDSRTENEITAETTLENVNYMDEEAVFGMPGFLEDMAAGMMLPPPQHFRDDMDFYSDVSLWSY 211
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
5 8185884 8186519 - CcPI632755_05g009380.1 Cco05g0938 178566
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Cco05g0938 211 Gene3D AP2/ERF domain 53 111 IPR036955 GO:0003700(InterPro)|GO:0006355(InterPro)
Cco05g0938 211 PANTHER DEHYDRATION-RESPONSIVE ELEMENT-BINDING PROTEIN 1D 11 211 IPR045277 GO:0003700(InterPro)
Cco05g0938 211 ProSiteProfiles AP2/ERF domain profile. 53 110 IPR001471 GO:0003700(InterPro)|GO:0006355(InterPro)
Cco05g0938 211 Pfam AP2 domain 53 102 IPR001471 GO:0003700(InterPro)|GO:0006355(InterPro)
Cco05g0938 211 FunFam Ethylene-responsive transcription factor 2 52 111 - -
Cco05g0938 211 SUPERFAMILY DNA-binding domain 53 112 IPR016177 GO:0003677(InterPro)
Cco05g0938 211 CDD AP2 52 112 IPR001471 GO:0003700(InterPro)|GO:0006355(InterPro)
Cco05g0938 211 PRINTS Ethylene responsive element binding protein signature 54 65 IPR001471 GO:0003700(InterPro)|GO:0006355(InterPro)
Cco05g0938 211 PRINTS Ethylene responsive element binding protein signature 76 92 IPR001471 GO:0003700(InterPro)|GO:0006355(InterPro)
Cco05g0938 211 SMART rav1_2 53 116 IPR001471 GO:0003700(InterPro)|GO:0006355(InterPro)
       

Duplication type information

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Cco05g0938 Cco-Chr5:8185884 Cco10g1915 Cco-Chr10:32757745 4.80E-33 dispersed
Cco05g0938 Cco-Chr5:8185884 Cco05g0939 Cco-Chr5:8206236 4.30E-26 tandem
Cco01g0592 Cco-Chr1:5879444 Cco05g0938 Cco-Chr5:8185884 8.70E-64 transposed
Cco01g0320 Cco-Chr1:3106950 Cco05g0938 Cco-Chr5:8185884 4.00E-31 wgd
       

Transcription factors information

Select Gene Hmm_acc Hmm_name Score E-value Regulatory Factors Family
59268 PF00847 AP2 3.50E-15 CL0081 Cco TF
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Cco05g0938 - - - 0.0