Gene search
Sequence information

Select | Gene | Cds | Cds_length | GC_content | Pep | Pep_length |
---|---|---|---|---|---|---|
Cco05g0939 | ATGTCTGATAATAATAATAATAATTCTCCCGCCCGCCCTGGTCGCCACCCCTTTTTCCGGGGTATCCGTTCCCGAAGTGGCAAATGGGTCTCTGAAATTCGCGAGCCACGTAAGACCACTCGCATTTGGCTCGGTACATACCCCACTCCCGAAATGGCCGCCGCAGCCTACGACGTCGCCGCCCTCTCTCTCAAAGGCCCTCATGCCTCCCTTAATTTCCCCGACTCTCTTAATTCCTATCACATTCCTCTTTCCACTTCCGCTTCTGACATTCGCGCCGCCGCCGCCATTGCCGCCGCCTCCAGAAACCTCAATAACAATAACCCCGGCCAGGCTTCTCCTTCTGCTGCTACTGCTGCTGATTCTTCACACACCGACGGCGGTGGGCCCTCCTCCCATGCCACGGCGGATGCTTCCGGCAAGTTTGTGGACGAGGAAGAGTTACTGAACATGCCCAATTTACTGGTGGACATGGCGGAGGGAATGCTGGTGAGTCCCCCTCGGATGAAATCGCCGTCGTCCGATGACTCTCCCACCCATTCTTCTCAAGGAGATGATGGATTATGGAGTTACTCCAAATAA | 582 | 55.15 | MSDNNNNNSPARPGRHPFFRGIRSRSGKWVSEIREPRKTTRIWLGTYPTPEMAAAAYDVAALSLKGPHASLNFPDSLNSYHIPLSTSASDIRAAAAIAAASRNLNNNNPGQASPSAATAADSSHTDGGGPSSHATADASGKFVDEEELLNMPNLLVDMAEGMLVSPPRMKSPSSDDSPTHSSQGDDGLWSYSK | 193 |
Gff information

Chromosome | Start | End | Strand | Old_gene | Gene | Num |
---|---|---|---|---|---|---|
5 | 8206236 | 8206817 | - | CcPI632755_05g009390.1 | Cco05g0939 | 178567 |
Annotation information

Select | Seq ID | Length | Analysis | Description | Start | End | IPR | GO |
---|---|---|---|---|---|---|---|---|
Cco05g0939 | 193 | Gene3D | AP2/ERF domain | 19 | 75 | IPR036955 | GO:0003700(InterPro)|GO:0006355(InterPro) | |
Cco05g0939 | 193 | MobiDBLite | consensus disorder prediction | 105 | 132 | - | - | |
Cco05g0939 | 193 | MobiDBLite | consensus disorder prediction | 1 | 21 | - | - | |
Cco05g0939 | 193 | PRINTS | Ethylene responsive element binding protein signature | 19 | 30 | IPR001471 | GO:0003700(InterPro)|GO:0006355(InterPro) | |
Cco05g0939 | 193 | PRINTS | Ethylene responsive element binding protein signature | 56 | 76 | IPR001471 | GO:0003700(InterPro)|GO:0006355(InterPro) | |
Cco05g0939 | 193 | Pfam | AP2 domain | 20 | 66 | IPR001471 | GO:0003700(InterPro)|GO:0006355(InterPro) | |
Cco05g0939 | 193 | ProSiteProfiles | AP2/ERF domain profile. | 18 | 74 | IPR001471 | GO:0003700(InterPro)|GO:0006355(InterPro) | |
Cco05g0939 | 193 | SUPERFAMILY | DNA-binding domain | 19 | 76 | IPR016177 | GO:0003677(InterPro) | |
Cco05g0939 | 193 | SMART | rav1_2 | 18 | 80 | IPR001471 | GO:0003700(InterPro)|GO:0006355(InterPro) | |
Cco05g0939 | 193 | PANTHER | DEHYDRATION-RESPONSIVE ELEMENT-BINDING PROTEIN 1D | 13 | 191 | IPR045277 | GO:0003700(InterPro) | |
Cco05g0939 | 193 | MobiDBLite | consensus disorder prediction | 159 | 193 | - | - | |
Cco05g0939 | 193 | CDD | AP2 | 19 | 76 | IPR001471 | GO:0003700(InterPro)|GO:0006355(InterPro) | |
Cco05g0939 | 193 | FunFam | Ethylene-responsive transcription factor 2 | 17 | 75 | - | - | |
Cco05g0939 | 193 | MobiDBLite | consensus disorder prediction | 170 | 193 | - | - | |
Cco05g0939 | 193 | MobiDBLite | consensus disorder prediction | 105 | 137 | - | - |
Duplication type information

Select | Gene1 | Location1 | Gene2 | Location2 | E-value | Duplicated-type |
---|---|---|---|---|---|---|
Cco01g0320 | Cco-Chr1:3106950 | Cco05g0939 | Cco-Chr5:8206236 | 8.10E-40 | dispersed | |
Cco05g0939 | Cco-Chr5:8206236 | Cco10g0374 | Cco-Chr10:4367754 | 2.10E-43 | dispersed | |
Cco05g0938 | Cco-Chr5:8185884 | Cco05g0939 | Cco-Chr5:8206236 | 4.30E-26 | tandem |
Transcription factors information

Select | Gene | Hmm_acc | Hmm_name | Score | E-value | Regulatory Factors | Family |
---|---|---|---|---|---|---|---|
59269 | PF00847 | AP2 | 3.00E-10 | CL0081 | Cco | TF |
Pathway information

Select | Query | KO | Definition | Second KO | KEGG Genes ID | GHOSTX Score |
---|---|---|---|---|---|---|
Cco05g0939 | - | - | - | 0.0 |