Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Cco05g0939 ATGTCTGATAATAATAATAATAATTCTCCCGCCCGCCCTGGTCGCCACCCCTTTTTCCGGGGTATCCGTTCCCGAAGTGGCAAATGGGTCTCTGAAATTCGCGAGCCACGTAAGACCACTCGCATTTGGCTCGGTACATACCCCACTCCCGAAATGGCCGCCGCAGCCTACGACGTCGCCGCCCTCTCTCTCAAAGGCCCTCATGCCTCCCTTAATTTCCCCGACTCTCTTAATTCCTATCACATTCCTCTTTCCACTTCCGCTTCTGACATTCGCGCCGCCGCCGCCATTGCCGCCGCCTCCAGAAACCTCAATAACAATAACCCCGGCCAGGCTTCTCCTTCTGCTGCTACTGCTGCTGATTCTTCACACACCGACGGCGGTGGGCCCTCCTCCCATGCCACGGCGGATGCTTCCGGCAAGTTTGTGGACGAGGAAGAGTTACTGAACATGCCCAATTTACTGGTGGACATGGCGGAGGGAATGCTGGTGAGTCCCCCTCGGATGAAATCGCCGTCGTCCGATGACTCTCCCACCCATTCTTCTCAAGGAGATGATGGATTATGGAGTTACTCCAAATAA 582 55.15 MSDNNNNNSPARPGRHPFFRGIRSRSGKWVSEIREPRKTTRIWLGTYPTPEMAAAAYDVAALSLKGPHASLNFPDSLNSYHIPLSTSASDIRAAAAIAAASRNLNNNNPGQASPSAATAADSSHTDGGGPSSHATADASGKFVDEEELLNMPNLLVDMAEGMLVSPPRMKSPSSDDSPTHSSQGDDGLWSYSK 193
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
5 8206236 8206817 - CcPI632755_05g009390.1 Cco05g0939 178567
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Cco05g0939 193 Gene3D AP2/ERF domain 19 75 IPR036955 GO:0003700(InterPro)|GO:0006355(InterPro)
Cco05g0939 193 MobiDBLite consensus disorder prediction 105 132 - -
Cco05g0939 193 MobiDBLite consensus disorder prediction 1 21 - -
Cco05g0939 193 PRINTS Ethylene responsive element binding protein signature 19 30 IPR001471 GO:0003700(InterPro)|GO:0006355(InterPro)
Cco05g0939 193 PRINTS Ethylene responsive element binding protein signature 56 76 IPR001471 GO:0003700(InterPro)|GO:0006355(InterPro)
Cco05g0939 193 Pfam AP2 domain 20 66 IPR001471 GO:0003700(InterPro)|GO:0006355(InterPro)
Cco05g0939 193 ProSiteProfiles AP2/ERF domain profile. 18 74 IPR001471 GO:0003700(InterPro)|GO:0006355(InterPro)
Cco05g0939 193 SUPERFAMILY DNA-binding domain 19 76 IPR016177 GO:0003677(InterPro)
Cco05g0939 193 SMART rav1_2 18 80 IPR001471 GO:0003700(InterPro)|GO:0006355(InterPro)
Cco05g0939 193 PANTHER DEHYDRATION-RESPONSIVE ELEMENT-BINDING PROTEIN 1D 13 191 IPR045277 GO:0003700(InterPro)
Cco05g0939 193 MobiDBLite consensus disorder prediction 159 193 - -
Cco05g0939 193 CDD AP2 19 76 IPR001471 GO:0003700(InterPro)|GO:0006355(InterPro)
Cco05g0939 193 FunFam Ethylene-responsive transcription factor 2 17 75 - -
Cco05g0939 193 MobiDBLite consensus disorder prediction 170 193 - -
Cco05g0939 193 MobiDBLite consensus disorder prediction 105 137 - -
       

Duplication type information

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Cco01g0320 Cco-Chr1:3106950 Cco05g0939 Cco-Chr5:8206236 8.10E-40 dispersed
Cco05g0939 Cco-Chr5:8206236 Cco10g0374 Cco-Chr10:4367754 2.10E-43 dispersed
Cco05g0938 Cco-Chr5:8185884 Cco05g0939 Cco-Chr5:8206236 4.30E-26 tandem
       

Transcription factors information

Select Gene Hmm_acc Hmm_name Score E-value Regulatory Factors Family
59269 PF00847 AP2 3.00E-10 CL0081 Cco TF
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Cco05g0939 - - - 0.0