Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Cco05g0946 ATGGCATCTTCTCGCCTGACTGGAGGATTAGCTCAGTCTCCATCAAGTTCTGGGATTTTCTACCAAGGAGAAGGACAGTCCCCAGCTATTGTTAATTCTCATTTGAGCCAATCATTTGCAAATTCATCAAATTCAATTCCAAGAACTGGATGTTCTGATTTTGGTCCAGTGTCCGGAGACATGAACAATGCAGTTTTAAATAGTGTGGCAAATTCAGGACCCAGTGTGGGTGCAAGTTCATTAGTTACGGATGCAAACTCTGCACTTTCAGGGGGGCCACATTTGCAAAGGAGTGCAAGCATCAATACAGAGTCGTACATGCGGTTGCCTGCATCGCCTATGTCATTCAATTCAAATAACATTAGTGTTTCGGGGTCCTCAGTTATAGATGGATCCTGTGTTGTGCAGCAAAATTCTCAACAGGACCAAAATATCCAACACATACAGCAACAGACACAGCCAGGTGCTTCACATGCCACATCATTACCAACATCACAAATAGGCCAAGTATCACTTCCGTTGGCCGGTAAACATCAGGGATCTTTCATTCCAGATCCAAACAGTTATTCTCAGGTGCAGAAGAAACCACGACTGGATATAAAGCCGGAAGATGTGCTGCAACAGCAAGTCTTGCAGCAGCTATTTCAGAGACAGGATTCCATGCAGTCACAAAACCGTAACTCACAGTTACAAGCTTTATTTCAACAGCAAAGAATGCGGCAACAGCAGCAGATTTTGCAGTCTCTACCTCAGTACAGGGCTCAGCTTCAGCAACAGCAGCAGCAGATACAGTTGAGGCAGCAATTGCAACAGCAGGTAATGCAGCCTGTATCACCCATGAAGCGGCCCCCATATGATGCTGGTGGTGTTTGTGCTCGCCGGCTGATGCAATATTTATATCATCAGCGGCAAAGACCTCCTGAAAATAGTATAGCCTACTGGCGAAAGTTTGTAGCAGAGTATTACTCTCCTCGTGCAAAGAAAAGATGGTGTTTGTCATTGTATGAGAATGTTGGCCACCATGCTCTTGGTGTGTTTCCTCAGGCAGCTATGGATGCGTGGCAGTGTGACATTTGTGGTTCCAAATCAGGGAGGGGTTTTGAGGCTACGTTTGAAGTACTACCAAGACTCAGCGAGATCAAATTTGGAAGTGGAGTTATTGATGAGCTTTTATTTCTGGACCTTCCCCAAGAAAGAAGATTTTCTACTGGACTCATGATGTTAGAGTATGGAAAAGCAATTCAAGAGAGCGTATATGAGCAACTTCGTGTTGTTCGCGAGGGTCAGCTTCGTATCATATTCACTCAAGACTTGAAGATTTTGTGTTGGGAATTTTGTGCTCGGCGTCATGAAGAACTTCTTCCTCGTAGGTTGGTTGCGCCTCAGGTGAATCAGCTGGTACAGGTTGCCCAGAAATGCCAAAACACAATTGCTGAAAGTGGGCCGGATGGTGTTTCTCAGAAAGATTTGCAGACAAATAGCAATATGGTACTGACGGCTGGTCGTCAGCTTGCTAAGAGTCTGGAGTTGCAGTTGCTGAATGACTTGGGTTTCTCTAAAAGATACGTCAGGTGTTTGCAGATATCAGAGGTTGTCAACAGTATGAAAGATCTGATTGGTTTCTGCCGGGATCAAAAAGTTGGGCCTATGGAGGGCTTGAAGAATTATCCTAGACATGCCACTGCAGCCAAGCTCCAAATGCAAAAAATGCAGGAGATGGAACAGTTAGCGAGTATTCAAGGTCTTCCCACCGACCGCAACACAATTAATAAGCTGATGACATTGCATCCTGAACTTGATAATCATGGGATTAATAACCATCAGATGATTGGTCGAGGAGGTTTCAGTGGTTCAGCACAAGCTGCTTTGGCAATGACTACATACCAGAATATCCTCATGAGACAGAACTCTATGAATTCCAACCCCAGCCCACATCAACAGGAGGCCTCATCTTCTTTCAATAATCCCAACTATAATCCATCCCCTACACTCCAGGGGACTGTATCCCTGATGCCTGGATCCGTACAGAACTCCTCTGTTGGTGGCTTTTCAGGCGCTCAGCAAGCCTTGCAAAAGCAATCGCAGCAGCTGCAACATCATCCACCAAATCCTGGCTCCTTGGTCCAGCAAAATCATCCTCAGACGATTCAAGGTGGCCAGGCCCTACAACAACAGATGATCCAGCAACTACTGCAGATGTCAAGTAACAATAAGAGTGCCGGTTTACAACAGCAACCCCTTACTGGACCAAATGCAAATAGAAGTTTAGGAAGAAGGGGCATGGGTTTTGTGGGCAACACCTCAGTTGCAGCTGTGGCATCTGGAAATATGTCCGGTAGCAATGTCCCTGGTCCGAGTAGGAGCAATAGCTTCAAAGCTGCTTCAAATAGCGAGTCCTCTGCTGTTAACAGTGAATTCAATCAGAAGGGTTCGGATTTCCCGCAAGATCTTCATCTACCAGAGAATCTGGTTGAAGATATAGGCCAAGATTTCCCTGAAAACGGGTTTATTAACAATGACCTTGATGAGGATTTGGGTTATGTCTGGAAGGCTTGA 2556 45.46 MASSRLTGGLAQSPSSSGIFYQGEGQSPAIVNSHLSQSFANSSNSIPRTGCSDFGPVSGDMNNAVLNSVANSGPSVGASSLVTDANSALSGGPHLQRSASINTESYMRLPASPMSFNSNNISVSGSSVIDGSCVVQQNSQQDQNIQHIQQQTQPGASHATSLPTSQIGQVSLPLAGKHQGSFIPDPNSYSQVQKKPRLDIKPEDVLQQQVLQQLFQRQDSMQSQNRNSQLQALFQQQRMRQQQQILQSLPQYRAQLQQQQQQIQLRQQLQQQVMQPVSPMKRPPYDAGGVCARRLMQYLYHQRQRPPENSIAYWRKFVAEYYSPRAKKRWCLSLYENVGHHALGVFPQAAMDAWQCDICGSKSGRGFEATFEVLPRLSEIKFGSGVIDELLFLDLPQERRFSTGLMMLEYGKAIQESVYEQLRVVREGQLRIIFTQDLKILCWEFCARRHEELLPRRLVAPQVNQLVQVAQKCQNTIAESGPDGVSQKDLQTNSNMVLTAGRQLAKSLELQLLNDLGFSKRYVRCLQISEVVNSMKDLIGFCRDQKVGPMEGLKNYPRHATAAKLQMQKMQEMEQLASIQGLPTDRNTINKLMTLHPELDNHGINNHQMIGRGGFSGSAQAALAMTTYQNILMRQNSMNSNPSPHQQEASSSFNNPNYNPSPTLQGTVSLMPGSVQNSSVGGFSGAQQALQKQSQQLQHHPPNPGSLVQQNHPQTIQGGQALQQQMIQQLLQMSSNNKSAGLQQQPLTGPNANRSLGRRGMGFVGNTSVAAVASGNMSGSNVPGPSRSNSFKAASNSESSAVNSEFNQKGSDFPQDLHLPENLVEDIGQDFPENGFINNDLDEDLGYVWKA 851
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
5 8290762 8295963 + CcPI632755_05g009460.1 Cco05g0946 178574
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Cco05g0946 851 MobiDBLite consensus disorder prediction 776 816 - -
Cco05g0946 851 MobiDBLite consensus disorder prediction 1 22 - -
Cco05g0946 851 Pfam LIM-domain binding protein 294 554 IPR029005 -
Cco05g0946 851 MobiDBLite consensus disorder prediction 636 712 - -
Cco05g0946 851 MobiDBLite consensus disorder prediction 776 811 - -
Cco05g0946 851 MobiDBLite consensus disorder prediction 140 163 - -
Cco05g0946 851 PANTHER LIM DOMAIN-BINDING PROTEIN 17 840 IPR029005 GO:0000122(PANTHER)|GO:0005634(PANTHER)|GO:0005667(PANTHER)|GO:0045944(PANTHER)
       

Duplication type information

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Cco01g0590 Cco-Chr1:5807307 Cco05g0946 Cco-Chr5:8290762 1.60E-266 dispersed
Cco05g0946 Cco-Chr5:8290762 Cco08g0421 Cco-Chr8:9877436 2.60E-93 dispersed
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Cco05g0946 - - - 0.0