Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Cco05g0948 ATGGCTTCAAAACAATCCATTATCTCCCCTTGGAGAAAAATCTACACCATTTTTCTAATCCTCTTCCTCTGTTTTTTCTCTTACTTTATCGGCCGCCGTCAACAACAACAACCCTCCACCGCCCCCCTCCGTTGCACCACCGTCCAAAACATCACCATCACTGCAAAACACAACAACTATTTTCCGGCATGTGGGGTGGAGTACAGCGAGTACACGCCATGTGAGGACACGAAAAGGTCTTTGAAGTTCAGCAGAGACAGGCTGATTTACAGAGAGAGGCACTGCCCGGAAAAGGAAGAGATTTTGAAGTGCCGGATTCCTCCGCCGCCTGGGTATCGGAATCCGTTCTCGTGGCCGGTGAGTAGAGATTTGGCGTGGTACGTGAATGTGCCGCATAAGCATCTGACGGTGGAGAAAGCTGTGCAGAATTGGATTAGATATGAAGGCGATACGTTTAGATTTCCCGGCGGAGGGACGATGTTCCCTGACGGAGCTGATGCTTACATTGATAATATTGGGAAATTAATTAATCTCAAAGATGGGTCCATCAGAACCGCCATTGATACTGGCTGTGGGGTGGGAAGTTGGGGAGCTTATCTACTGTCGAGGGACATTGTAACGATGTCGTTTGCGCCAAGGGATACTCATGAAGCTCAAGTTCAGTTTGCTTTGGAGAGAGGAGTTCCTGCACTCATTGGCATTCTTGCCTCTAAGAGACTTCCTTATCCTTCAAATGCCTTTGACATGGCTCATTGCTCTCGCTGCCTCATCCCTTGGCCACAATATGATGGGATCCTCCTCATTGAAGTCGATCGAGTACTACGCCCCGGCGGATACTGGATTTTATCAGGCCCTCCAGTCAACTGGAAGACGCACTGGAAAGGTTGGGAAAGAACAAAGGAAGATTTGAATTCTGAACAGCTTGCCATTGAAAAGGTAGCCAAAAGCCTCTGTTGGACTAAACTAGTGGAAGATGGTGATATTGCCATTTGGCAAAAGCCTATCAATCACTTCAACTGCAAACTCAACCGCAAGATCACCAAGAATACTCCTTTCTGTAATGCCCAAGATCCTGACAGAGCTTGGTATACGGATATGCAAGCTTGTTTAACACACTTGCCTGAAGTCTCAAACAGTAAGGAAATTGCAGGAGGGAAGTTGGCAAGATGGCCTGAAAGGCTAAATGCAATCCCACATAGGATTAGCAGAGGAACTGTGAAAGGGGTGACAGAAGAAACTTTCATTCATGATTCTGAACTATGGAAGAAGAGGTTGTCATCTTACAGAACCATCAACAATCAGCTGAGTAAGCCCGGACGGTACCGCAATTTCTTGGACATGAATGCTTTTTTGGGTGGATTTGCTGCTGCTCTGGTTGATGATCCAGTTTGGGTGATGAACGTGGTCCCTGTGGATGTCAAAGTCAATACGCTCGGAGTCATATTCGATAGGGGTTTAATCGGCTCATACCAAGATTGGTGTGAGGCGATGTCTACTTATCCAAGAACTTATGACTTCATTCATGCTGATTCAATTTTTAGCCTCTACGAGAATAGATGTGAAATGGAAGATATTCTACTTGAAATGGACAGAATTCTGAGGCCAGAAGGAAGCGTAATATTCCGAGAGAACATCAACATTTTGGCGAAAATCAAGAAGATAACCGATAAGTTGAATTGGAGCAGTCAAATTGTGGATCATGAAGATGGACCTTATCATATGGAAAAACTTCTATTTGCAGTCAAAAACTATTGGACAGCACCTCCTGAACTTTCTGATCAACAACAGGGATCTAAAGCAAATTAA 1806 45.13 MASKQSIISPWRKIYTIFLILFLCFFSYFIGRRQQQQPSTAPLRCTTVQNITITAKHNNYFPACGVEYSEYTPCEDTKRSLKFSRDRLIYRERHCPEKEEILKCRIPPPPGYRNPFSWPVSRDLAWYVNVPHKHLTVEKAVQNWIRYEGDTFRFPGGGTMFPDGADAYIDNIGKLINLKDGSIRTAIDTGCGVGSWGAYLLSRDIVTMSFAPRDTHEAQVQFALERGVPALIGILASKRLPYPSNAFDMAHCSRCLIPWPQYDGILLIEVDRVLRPGGYWILSGPPVNWKTHWKGWERTKEDLNSEQLAIEKVAKSLCWTKLVEDGDIAIWQKPINHFNCKLNRKITKNTPFCNAQDPDRAWYTDMQACLTHLPEVSNSKEIAGGKLARWPERLNAIPHRISRGTVKGVTEETFIHDSELWKKRLSSYRTINNQLSKPGRYRNFLDMNAFLGGFAAALVDDPVWVMNVVPVDVKVNTLGVIFDRGLIGSYQDWCEAMSTYPRTYDFIHADSIFSLYENRCEMEDILLEMDRILRPEGSVIFRENINILAKIKKITDKLNWSSQIVDHEDGPYHMEKLLFAVKNYWTAPPELSDQQQGSKAN 601
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
5 8304689 8310015 + CcPI632755_05g009480.1 Cco05g0948 178576

Annotation

Select Seq ID Length Analysis Description Start End IPR GO
Cco05g0948 601 FunFam Putative methyltransferase PMT15 139 333 - -
Cco05g0948 601 SUPERFAMILY S-adenosyl-L-methionine-dependent methyltransferases 343 577 IPR029063 -
Cco05g0948 601 Pfam Putative S-adenosyl-L-methionine-dependent methyltransferase 70 582 IPR004159 GO:0008168(InterPro)
Cco05g0948 601 SUPERFAMILY S-adenosyl-L-methionine-dependent methyltransferases 92 294 IPR029063 -
Cco05g0948 601 Gene3D Vaccinia Virus protein VP39 157 323 IPR029063 -
Cco05g0948 601 CDD AdoMet_MTases 185 279 - -
Cco05g0948 601 PANTHER SAM-DEPENDENT METHYLTRANSFERASE 15 585 IPR004159 GO:0005737(PANTHER)|GO:0005768(PANTHER)|GO:0005802(PANTHER)|GO:0008168(InterPro)
       

Pathway

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Cco05g0948 - - - - 0.0
       

Dupl-types

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Cco05g0223 Cco-Chr5:1729700 Cco05g0948 Cco-Chr5:8304689 5.70E-247 dispersed
Cco05g0948 Cco-Chr5:8304689 Cco06g0735 Cco-Chr6:8374509 7.80E-129 dispersed
Cco01g0121 Cco-Chr1:1034563 Cco05g0948 Cco-Chr5:8304689 1.70E-221 transposed
Cco07g0233 Cco-Chr7:2363594 Cco05g0948 Cco-Chr5:8304689 9.50E-151 transposed
Cco10g0199 Cco-Chr10:2010029 Cco05g0948 Cco-Chr5:8304689 1.20E-199 transposed
Cco11g0911 Cco-Chr11:12710529 Cco05g0948 Cco-Chr5:8304689 3.40E-202 transposed
Cco05g0220 Cco-Chr5:1711275 Cco05g0948 Cco-Chr5:8304689 6.70E-141 wgd
       

Deco-Alignment

Select Vvi1 Blo1 Blo2 Bda1 Bda2 Bpe1 Bpe2 Bma1 Bma2 Cmo1 Cmo2 Cma1 Cma2 Car1 Car2 Sed1 Cpe1 Cpe2 Bhi1 Tan1 Cmetu1 Lac1 Hepe1 Mch1 Lcy1 Cla1 Cam1 Cec1 Cco1 Clacu1 Cmu1 Cre1 Cone1 Cone2 Cone3 Cone4 Lsi1 Csa1 Chy1 Cme1 Blo3 Blo4 Bda3 Bda4 Bpe3 Bpe4 Bma3 Bma4 Sed2 Cmo3 Cmo4 Cma3 Cma4 Car3 Car4 Cpe3 Cpe4 Bhi2 Tan2 Cmetu2 Lac2 Hepe2 Mch2 Lcy2 Cla2 Cam2 Cec2 Cco2 Clacu2 Cmu2 Cre2 Lsi2 Csa2 Chy2 Cme2
Vvi16g607 . . . . . . . Bma14g02088 Cmo16g00150 Cmo18g01254 . . . . Sed02g1606 . Cpe14g00121 Bhi01g01355 Tan01g0280 Cmetu06g0945 . Hepe07g0181 Mch10g0177 . . . . . . . . . . . . Lsi05g01255 . . Cme06g00973 . . . . . . . . . . . Cma16g00143 Cma18g01231 Car16g00124 Car18g01135 . . . . . . . . . Cla05g00857 Cam05g0943 Cec05g0948 Cco05g0948 Clacu05g0930 Cmu05g0888 Cre05g0973 . Csa03g01687 Chy06g00920 .
       

Syn-Orthogroups

Select Orthogroup Bda Bhi Blo Bma Bpe Cam Car Cco Cec Chy Cla Clacu Cma Cme Cmetu Cmo Cmu Cone Cpe Cre Csa HCH Hepe Lac Lcy Lsi Mch Sed Tan Vvi Total
OG0002128 2 2 2 2 2 2 3 2 2 2 2 2 3 2 2 4 2 3 1 2 2 2 2 2 2 2 2 3 2 2 65