Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Cco05g0954 ATGCCTAGTGGTGCAATTACTGACCAGAGCTTTCTAGCTTATTCGATTCCCAGTTCAATGCCCAGCTCCTCTGAATTCTCCAGTTCCTTAAGGAAAATGGACGGTTATGGAGAAGTGTGTCTGCTTGGAGACGGCTTTGATCCGACCAGAATTGTGAGGATAAGGGAAGATGGATATGATAGTAGATCAGGCAGTGACAACATCGATGGTGCTGTATCTGGGGATGATCAAGATGCTAATGAAGAACAACCACCAAAAAGGAAAAAGTACCATAGGCATACTCCCCATCAGATCCAAGAGCTTGAGATTTTCTTTAAGGAGTGTCCTCATCCTGATGATAAACAAAGAAGTGAGCTCAGTAGGAGGCTTGGTTTGGAGACAAAGCAAGTGAAGTTTTGGTTTCAAAATCGTCGAACACAGATGAAGACGCAAATAGAACGACATGAGAATGCAATTCTTAAGCAAGAAAACGATAAGCTCCGAGCCGAGAATAGTGTGATGAAGGATGCTATTTCTAACCCAACGTGTAATACTTGTGGTGGCCCTTCAATTCCTGTTCATTTATCATTTGAAGAACACCAGCTTAGGATTGAGAATGTCAGATTAAGAGATGAACTGCACCGGTTATATGCAGTCACCAACAAGTTCTTGGGCTGGCCGATTGTGCCCTTTGCCAATCATGGCTCTTCACCAAGTTCTGACTCTTGCTTGGAACTTTCAGTAGGAAGAAATGGAATTGGAAATTTGAGTACCGTTTCTGATTCAATGGGGCTTAATTTGGGAAACGAACTTTTCAATGCTGGCCCTGTGATGCCTGTTAGTAAGCCTGAAATAGGCATGCTAAGTAATGATATACCACTTGAGAGAACAATATATGTGGATCTTGCTTTGGCAGCCATGAATGAATTGGTTAAGATGGCTCAAATGGACGGTCCCCTTTGGATCAGAAGTCGGGATGGCAAAGAGACATTGAACCTTGATGAATATTCAAGGACATTTCCTTCTTCGGCTGGCATGAAGCACAGTAATTGGACAACAGAGGTGACCAGAGATACTACAATGGTCATCATCAACAGCTTGGCACTTGTCGAGACATTGATGGACGCAAACCGATGGGCAGAAATGTTTCCTTGCTTGATTGCTCGAGCTACTACAATTGATGTGATATCAAGTGGCATGGATGGAACTAGAAATGGTGCATTACAATTGATGCATGCTGAACTCCGAGTACTTTCCCCACTCGTTCCTGTTCGTACACTTAAGTTCCTCCGCTTCTGCAAGCAGCACGCTGATGGTCTATGGGCTGTAGTTGATGTTTCCATTGGCGAAGGTTCACATTCAAACTCATTTTTCGGTTGCAGGAGGCTCCCTTCGGGCTGTGTTGTGCAAGATATGCCTAATGGTTTCTCCAAGGTTACATGGGTGGAACATACAGAATATGATGAGACTGTTATCCACCAGCTTTACCGGCAGTTAATTAGTTCGGGCAGCGGCTTTGGTTCACAACGGTGGCTTGCTACCCTTCAAAGACAATGCGACTGTTTGGCAATTCTTATGTCTTCTACTATCCCCTCCGAAGATCCTGCAGGAATATCTCCATGCGGTAGGAGAAGTATGTTGAAGCTATCGCAGCGTATGGTGGATAACTTCTGTTCTGGGGTTTGCAGTTCGACTTTGCATAAGTGGGACAAGCTCGTTGTAGGCAATATTAGTGAAGATGTAAAAGTGATGGCTAGAAAGAGCATCAACGATCCTGGCGAGCCACCTGGTATCGTGTTGAGTGCGGCAACTTCGGTTTGGATGCCAGTAACTCAGCAGAGGTTGTTTGCATTCTTGCAAGATGAGTGCTTACGGAGTGAGTGGGATATTTTATCCAACAGCCGGCCAATGCTAGAGATGCTCCGCATCTCAAAAGGCCAAGGACCAGATAACCGTGTTTCTCTCCTGCGTGCTAATCCCATGAACGCTAATGAGAGCACAATGTTCATATTGCAAGAGACTTGGACTGATGTATCAGGCTCGCTGGTTGTTTACGCTCCAGTTGACACTTCATCGGTTAATTTGGTGATGCGCGGAGGAGATTCTGCTTATGTATCACTATTACCATCAGGATTTGCAATTCTCCCCAATGGTCCATCCAACTATGCTTGCACAAACGACCAAGACGGATCTGTCAAGTCAGTCGTTAACAGTGGCCATGGTGGTGGATGTCTGCTCACAGTTGCATTCCAGATTTTGGTGAATAGCCTTCCAACAGCCAAACTCACCGTCGAATCAGTTGAGACAGTTAACAATCTCATTTCTTGCACCATCCAAAAGATCAAAACTGCCCTTCAAATATCGTAA 2346 44.8 MPSGAITDQSFLAYSIPSSMPSSSEFSSSLRKMDGYGEVCLLGDGFDPTRIVRIREDGYDSRSGSDNIDGAVSGDDQDANEEQPPKRKKYHRHTPHQIQELEIFFKECPHPDDKQRSELSRRLGLETKQVKFWFQNRRTQMKTQIERHENAILKQENDKLRAENSVMKDAISNPTCNTCGGPSIPVHLSFEEHQLRIENVRLRDELHRLYAVTNKFLGWPIVPFANHGSSPSSDSCLELSVGRNGIGNLSTVSDSMGLNLGNELFNAGPVMPVSKPEIGMLSNDIPLERTIYVDLALAAMNELVKMAQMDGPLWIRSRDGKETLNLDEYSRTFPSSAGMKHSNWTTEVTRDTTMVIINSLALVETLMDANRWAEMFPCLIARATTIDVISSGMDGTRNGALQLMHAELRVLSPLVPVRTLKFLRFCKQHADGLWAVVDVSIGEGSHSNSFFGCRRLPSGCVVQDMPNGFSKVTWVEHTEYDETVIHQLYRQLISSGSGFGSQRWLATLQRQCDCLAILMSSTIPSEDPAGISPCGRRSMLKLSQRMVDNFCSGVCSSTLHKWDKLVVGNISEDVKVMARKSINDPGEPPGIVLSAATSVWMPVTQQRLFAFLQDECLRSEWDILSNSRPMLEMLRISKGQGPDNRVSLLRANPMNANESTMFILQETWTDVSGSLVVYAPVDTSSVNLVMRGGDSAYVSLLPSGFAILPNGPSNYACTNDQDGSVKSVVNSGHGGGCLLTVAFQILVNSLPTAKLTVESVETVNNLISCTIQKIKTALQIS 781
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
5 8334654 8339179 + CcPI632755_05g009540.1 Cco05g0954 178582
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Cco05g0954 781 MobiDBLite consensus disorder prediction 57 94 - -
Cco05g0954 781 Gene3D - 73 160 - -
Cco05g0954 781 FunFam Homeobox-leucine zipper protein GLABRA 2 294 513 - -
Cco05g0954 781 Coils Coil 138 170 - -
Cco05g0954 781 CDD START_ArGLABRA2_like 294 512 - -
Cco05g0954 781 SUPERFAMILY Homeodomain-like 71 144 IPR009057 -
Cco05g0954 781 SUPERFAMILY Bet v1-like 286 514 - -
Cco05g0954 781 ProSiteProfiles 'Homeobox' domain profile. 84 144 IPR001356 GO:0003677(InterPro)
Cco05g0954 781 SMART HOX_1 86 148 IPR001356 GO:0003677(InterPro)
Cco05g0954 781 Pfam START domain 295 513 IPR002913 GO:0008289(InterPro)
Cco05g0954 781 FunFam Homeobox-leucine zipper protein HDG1 73 160 - -
Cco05g0954 781 CDD homeodomain 87 144 IPR001356 GO:0003677(InterPro)
Cco05g0954 781 SUPERFAMILY Bet v1-like 542 775 - -
Cco05g0954 781 SMART START_1 294 514 IPR002913 GO:0008289(InterPro)
Cco05g0954 781 PANTHER HOMEOBOX-LEUCINE ZIPPER PROTEIN MERISTEM L1 74 779 IPR042160 -
Cco05g0954 781 Pfam Homeodomain 87 142 IPR001356 GO:0003677(InterPro)
Cco05g0954 781 ProSitePatterns 'Homeobox' domain signature. 119 142 IPR017970 GO:0000981(InterPro)|GO:0006355(InterPro)
Cco05g0954 781 ProSiteProfiles START domain profile. 285 517 IPR002913 GO:0008289(InterPro)
       

Duplication type information

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Cco05g0954 Cco-Chr5:8334654 Cco09g1176 Cco-Chr9:11579859 1.00E-149 dispersed
Cco05g0219 Cco-Chr5:1701386 Cco05g0954 Cco-Chr5:8334654 5.20E-215 wgd
Cco05g0954 Cco-Chr5:8334654 Cco06g0006 Cco-Chr6:87865 3.30E-265 wgd
       

Transcription factors information

Select Gene Hmm_acc Hmm_name Score E-value Regulatory Factors Family
59272 PF01852 START 6.80E-48 CL0209 Cco TF
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Cco05g0954 K09338 - csv:101218216 1461.05