Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Cco05g0955 ATGTCAAGGGGTATAATAGAGCCACTAATTGTGGGAAGAGTGGTGGGAGATGTGGTTGATATCTTCAGTCCAAATGTGAAAATGAATGTCATTTACAATTCCTTCAAACAAGTCGCCAATGGCCACGAGCTTCTCCCTTCTCTTATTTCCTCTAAACCTCGCGTTGAGGTTGGCGGTGACGACATGAGATCAGCTTTCACTTTGATTATGATTGACCCTGATGCTCCAAGCCCAAGTGACCCTTATCTTAGGGAATACCTTCTCTGGATGGTCACAGACATTCCTGGTACCACTGATGCTTCTTTCGGAAAGGAGATGATGAGTTATGAAAGTCCAAAGCCGCAGATTGGAATTCATCGTTACGTGTTCGTGTTGTTCAAGCAGCGAGGGAGACAGACGGTGAGATTATCGTCGTCTTCAAGAAGCAATTTCAACACAAGAAACTTCACGGAGGCCAATGGGTTGGGCCTTCCCGTCGCCGCTGTTTACTTCAATGCTCAGAGAGAAACCGCCGCAAGAAGAAAATGA 528 46.02 MSRGIIEPLIVGRVVGDVVDIFSPNVKMNVIYNSFKQVANGHELLPSLISSKPRVEVGGDDMRSAFTLIMIDPDAPSPSDPYLREYLLWMVTDIPGTTDASFGKEMMSYESPKPQIGIHRYVFVLFKQRGRQTVRLSSSSRSNFNTRNFTEANGLGLPVAAVYFNAQRETAARRK 175
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
5 8343914 8344957 - CcPI632755_05g009550.1 Cco05g0955 178583

Annotation

Select Seq ID Length Analysis Description Start End IPR GO
Cco05g0955 175 FunFam Terminal flower 1 1 175 - -
Cco05g0955 175 Gene3D - 2 175 IPR036610 -
Cco05g0955 175 Pfam Phosphatidylethanolamine-binding protein 53 162 IPR008914 -
Cco05g0955 175 CDD PEBP_euk 26 166 IPR035810 -
Cco05g0955 175 PANTHER PHOSPHATIDYLETHANOLAMINE-BINDING PROTEIN 11 170 IPR035810 GO:0009908(PANTHER)|GO:0010228(PANTHER)
Cco05g0955 175 SUPERFAMILY PEBP-like 13 169 IPR036610 -
       

Pathway

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Cco05g0955 K06910 - - csv:101218688 298.516
       

Dupl-types

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Cco02g2372 Cco-Chr2:36130291 Cco05g0955 Cco-Chr5:8343914 1.90E-59 dispersed
Cco03g1026 Cco-Chr3:16651278 Cco05g0955 Cco-Chr5:8343914 9.00E-57 dispersed
Cco05g0955 Cco-Chr5:8343914 Cco10g1894 Cco-Chr10:32507720 1.60E-61 dispersed
Cco05g0955 Cco-Chr5:8343914 Cco04g1212 Cco-Chr4:27547292 3.10E-62 transposed
       

Deco-Alignment

Select Vvi1 Blo1 Blo2 Bda1 Bda2 Bpe1 Bpe2 Bma1 Bma2 Cmo1 Cmo2 Cma1 Cma2 Car1 Car2 Sed1 Cpe1 Cpe2 Bhi1 Tan1 Cmetu1 Lac1 Hepe1 Mch1 Lcy1 Cla1 Cam1 Cec1 Cco1 Clacu1 Cmu1 Cre1 Cone1 Cone2 Cone3 Cone4 Lsi1 Csa1 Chy1 Cme1 Blo3 Blo4 Bda3 Bda4 Bpe3 Bpe4 Bma3 Bma4 Sed2 Cmo3 Cmo4 Cma3 Cma4 Car3 Car4 Cpe3 Cpe4 Bhi2 Tan2 Cmetu2 Lac2 Hepe2 Mch2 Lcy2 Cla2 Cam2 Cec2 Cco2 Clacu2 Cmu2 Cre2 Lsi2 Csa2 Chy2 Cme2
Vvi16g618 . . Bda05g00059 . Bpe03g00295 . Bma10g01214 . Cmo16g00145 . . . . . Sed07g1050 . Cpe14g00117 Bhi01g01345 Tan01g0271 Cmetu06g0928 . Hepe07g0175 Mch10g0171 . . . . . . . . . . . . Lsi05g01247 . . Cme06g00979 Blo07g00420 . . . . . . . . . . Cma16g00139 . Car16g00123 . . . . . . . . . . Cla05g00863 Cam05g0950 Cec05g0955 Cco05g0955 Clacu05g0937 Cmu05g0895 Cre05g0979 . Csa03g01693 Chy06g00927 .
       

Syn-Orthogroups

Select Orthogroup Bda Bhi Blo Bma Bpe Cam Car Cco Cec Chy Cla Clacu Cma Cme Cmetu Cmo Cmu Cone Cpe Cre Csa HCH Hepe Lac Lcy Lsi Mch Sed Tan Vvi Total
OG0000405 2 8 2 3 3 4 5 4 4 4 4 4 5 4 3 4 4 8 5 4 4 5 4 4 3 4 4 5 5 3 125