Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Cco05g0956 ATGGTTTTTCATATGGGTATGGAGTTGAAACGCTTCTTTTTCATTTTCATTGTCTGCTTCGAGCTCTGCATTTTGAGCTCCAATGGCGCTACAGTCCAGAATGAGATTATTATCGAGAGAGAAAGCTTGATTTCTTTCAAAGCTTCGTTAGAGACCTCTGAAATTCTGCCATGGAACTCAACAGTTCCTCACTGCTTTTGGGCCGGAGTTTCTTGCCGATTCGGTCGAGTTACAGAGCTCTCTCTTTCATCTCTTTCCCTCAAAGGCCAACTCTCACAGTCCCTCTTTAATATTTTGAGCCTCTCTGTTCTTGACCTTTCAAACAACTTCTTCTATGGCTCAATCCCACCCCAGGTATCCAATCTTCGGAGCTTGAAGGTGCTCGCTCTCGGCGGAAATCAGTTTTCCGGCGACTTCCCTATCGAACTCACTGAGTTGACTCGGTTGGAGAATCTCAAGTTGGGGACTAATTTATTCACAGGTAAAATCCCGCCGGAGCTTGGAAATTTGAAGCAGTTACGGACTCTTGACCTCTCCGGCAATGCCTTCGTCGGAAATGTTCCGCCCCACATCGGAAACTTGACGAGGATTTTATCCTTGGACCTCGGCAACAATCTTTTATCAGGTTCACTTCCATTGACCATCTTTACTGAGCTTACATCTTTAACTTCTCTGGACATTTCAAACAACTCTTTTTCGGGTTCAATCCCACCTGAAATTGGTAATCTAAAGCATTTGACTGGGCTTTATATCGGCATTAACCACCTTTCCGGTGAGTTGCCTCCTGAAGTTGGTAACCTTGTATTGCTGGAGAACTTTTTTTCGCCGTCTTGTTCTTTAACTGGTCCATTGCCTGACGAACTATCCAAGTTGAAATCATTGAGCAAACTGGATCTTTCATACAACCCACTTGGGTGTTCTATCCCTAAAACGATTGGTGAATTGCAGAACTTGACTATATTGAATCTGGTTTACACTGAGCTTAATGGTTCTATTCCTGCTGAGCTTGGGAGATGCAGAAATTTGAAAACATTGATGCTTTCTTTCAACTTTCTAACTGGGGAGTTGCCACAAGAGCTTTCTGAGCTTTCCATGTTGACATTTTCTGCTGAGAGGAATCAGCTTTCTGGGCCATTACCTTCTTGGCTTGGCAAATGGGATCATGTCGATTCTATTTTACTCTCGAGTAATCGGTTCACCGGCGAAATCCCACCTGAGATTGGAAATTGCTTGATGCTTAATCACCTTAGTTTGAGCAATAACTTGTTGACAGGTCCAATACCTAAAGAAATTTGTAATGCTGTATCCTTGACAGAGATTGATCTTGACAGTAATTTCCTTTCGGGTACGATTGATGACACATTTGTAATGTGTAAAAACCTTACGCAGTTGGTCTTGGTTGACAACCAGATTGTTGGTTCCATACCAGAGTACTTCTCAGACATTCCCCTACTGGTAATCAACCTTGACTCCAACAATTTTACAGGTTCTTTACCGAGAAGTATATGGAACTCAATGGATTTGATGGAATTTTCTGCTGCAAATAACCAGTTAGAGGGTCATCTCCCTCCAGAAATTGGTTATGCAGCTTCCCTTGAGAGGCTTGTTCTCAGCAACAACAGGCTGACAGGCATAATACCAAATGAGATTGGTAATCTCACAGCCCTTTCTGTTCTAAATTTGAATTCAAATCTGCTTGAAGGAACTATTCCTGCCATGCTTGGAGATTGCAGTGAACTTACCACATTAGACCTTGGAAACAACAGTCTAAATGGGTCGATTCCAGAAAGACTTGCAGACCTTACTGAATTACAGTGCCTAGTTCTTTCACACAACAATTTATCTGGAGAAATACCTTCCAATCCGTCTGCTTATTTTCGACAGTTGACAATTCCTGATTTGAGCTTTGTTCAGCATCATGGTGTTTTTGATCTGTCTCATAATAGATTGTCTGGTACCATACCTGATGAACTGGGGAACTGTGTCGTTGTGGTAGATCTTTTACTCAACAATAATCTACTTTCTGGAGCAATTCCTAGATCTCTCTCAAAGTTAACAAACCTCACAACCTTGGATTTATCTGGCAATATGCTTACTGGTCCTATTCCTGCAGAGATTGGCAATGCTCTCAAGCTCCAAGGCCTGTATCTTGGGAATAATCACCTCATGGGAATGATCCCTGAAAGCTTCAGTCATTTGAGTAGCTTAGTGAAGTTGAACTTAACTGGTAATAAATTATCTGGTTCGGTTCTGAAAACTTTTGGTGGTCTGAAAGCTCTAACTCATTTGGATTTAAGTTGTAATGAGTTGGATGGTGATCTTCCCTCTTCTCTGTCCAGCATGTTGAACCTTGTGGGGCTTTATGTACAGGAGAACAGGCTTTCTGGTCAGGTTGTTAAACTTTTCCCAAGTTCCATGACATGGAAGATTGAAACTTTGAATTTGAGTAATAACTATTTTGAGGGTGTTCTTCCACGAACATTGGGCAATCTTTCATACTTGACGACTTTGGATCTTCATGGAAATAAGTTCACAGGGCCAATCCCTTCAGATCTTGGGGATCTTATGCAACTTGAATACCTTGATGTTTCGAACAACAGGCTTTCAGGGGAGATTCCAGACAAAATATGCAGCCTCATCAATATGTTTTATCTGAATTTAGCAGAAAACAGTCTTGAAGGGCCAATTCCGAGAAGTGGCATTTGCCAGAATCTATCCAAAAGTTCACTTGCCGGTAACAAGGACCTTTGTGGGAGAATCCTGGGTTTCAATTGCCGGATCAAAAGCTTAGAAAGATCTGCAGTCTTGAATGCTTGGAGTGTTGCTGGGATTATCATTGTTAGCGTTCTTATTATTCTAACTGTGGCGTTTGCCATGAGAAGACGGATTATTAGAAGACAGAGAGATAATGATCCAGAGGAAATGGAGGAAAGCAAATTAAACAGTTTCATAGACCCCAATGTCTATTTCTTAAGCAGCAGCAGATCAAAAGAGCCTTTAAGCATCAATGTGGCCATGTTCGAGCAGCCCCTTCTGAAGTTAACTTTGGTTGATATCCTGGAAGCAACCAATAACTTCTGTAAAACAAACATTATTGGAGATGGAGGATTCGGGACCGTCTACAAGGCCACTTTGCCTGATGGAAAAGTTGTTGCTGTGAAGAAGCTAAGCGAAGCGAAAACACAGGGGAATAGAGAATTCATTGCTGAAATGGAAACTATAGGCAAAGTAAAGCACCATAATCTTGTTCCATTGCTTGGCTACTGTTCTCTTGGGGAGGAGAAGCTTCTTGTGTATGAGTATATGGTGAATGGTAGCTTGGATCTTTGGCTGAGAAACCGAACTGGTACTCTCGAAGTCCTTAACTGGGAGACTCGCTTCAAAGTCGCTTCAGGCGCAGCCCGTGGACTGGCATTTCTTCACCATGGATTCATACCCCATATCATTCACAGAGATGTTAAAGCAAGCAATATACTCCTCAACCAAGACTTTGAACCAAAAGTTGCTGACTTTGGATTGGCAAGATTGATCAGTGCTTGTGAGACTCATGTCACGACTGAGATTGCTGGAACCTTTGGTTACATCCCACCGGAGTACGGGCAGAGTGGGCGGTCGACTACGAAAGGCGACGTTTATAGCTTCGGTGTGATTCTACTGGAATTGGTAACTGGGAAGGAACCAACTGGACCTGATTTTAAGGAGATTGAGGGTGGAAATTTGGTTGGCTGGGTGTTTCAGAAGATCAACAAGGGTCAGGCTGCAGATGTTCTGGATGCCACAGTTCTGAATGCTGATTCCAAGCATATGATGCTTCAAACTCTTCAGATTGCTTGTGTTTGCTTGTCAGAAAATCCTGCTAATAGACCTTCCATGCTTCAGGTATTGAAGTTTCTTAAAGGGATCAAAGATGAGTAA 3915 42.38 MVFHMGMELKRFFFIFIVCFELCILSSNGATVQNEIIIERESLISFKASLETSEILPWNSTVPHCFWAGVSCRFGRVTELSLSSLSLKGQLSQSLFNILSLSVLDLSNNFFYGSIPPQVSNLRSLKVLALGGNQFSGDFPIELTELTRLENLKLGTNLFTGKIPPELGNLKQLRTLDLSGNAFVGNVPPHIGNLTRILSLDLGNNLLSGSLPLTIFTELTSLTSLDISNNSFSGSIPPEIGNLKHLTGLYIGINHLSGELPPEVGNLVLLENFFSPSCSLTGPLPDELSKLKSLSKLDLSYNPLGCSIPKTIGELQNLTILNLVYTELNGSIPAELGRCRNLKTLMLSFNFLTGELPQELSELSMLTFSAERNQLSGPLPSWLGKWDHVDSILLSSNRFTGEIPPEIGNCLMLNHLSLSNNLLTGPIPKEICNAVSLTEIDLDSNFLSGTIDDTFVMCKNLTQLVLVDNQIVGSIPEYFSDIPLLVINLDSNNFTGSLPRSIWNSMDLMEFSAANNQLEGHLPPEIGYAASLERLVLSNNRLTGIIPNEIGNLTALSVLNLNSNLLEGTIPAMLGDCSELTTLDLGNNSLNGSIPERLADLTELQCLVLSHNNLSGEIPSNPSAYFRQLTIPDLSFVQHHGVFDLSHNRLSGTIPDELGNCVVVVDLLLNNNLLSGAIPRSLSKLTNLTTLDLSGNMLTGPIPAEIGNALKLQGLYLGNNHLMGMIPESFSHLSSLVKLNLTGNKLSGSVLKTFGGLKALTHLDLSCNELDGDLPSSLSSMLNLVGLYVQENRLSGQVVKLFPSSMTWKIETLNLSNNYFEGVLPRTLGNLSYLTTLDLHGNKFTGPIPSDLGDLMQLEYLDVSNNRLSGEIPDKICSLINMFYLNLAENSLEGPIPRSGICQNLSKSSLAGNKDLCGRILGFNCRIKSLERSAVLNAWSVAGIIIVSVLIILTVAFAMRRRIIRRQRDNDPEEMEESKLNSFIDPNVYFLSSSRSKEPLSINVAMFEQPLLKLTLVDILEATNNFCKTNIIGDGGFGTVYKATLPDGKVVAVKKLSEAKTQGNREFIAEMETIGKVKHHNLVPLLGYCSLGEEKLLVYEYMVNGSLDLWLRNRTGTLEVLNWETRFKVASGAARGLAFLHHGFIPHIIHRDVKASNILLNQDFEPKVADFGLARLISACETHVTTEIAGTFGYIPPEYGQSGRSTTKGDVYSFGVILLELVTGKEPTGPDFKEIEGGNLVGWVFQKINKGQAADVLDATVLNADSKHMMLQTLQIACVCLSENPANRPSMLQVLKFLKGIKDE 1304
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
5 8373359 8377273 + CcPI632755_05g009560.1 Cco05g0956 178584
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Cco05g0956 1304 SMART LRR_sd22_2 855 881 - -
Cco05g0956 1304 SMART LRR_sd22_2 577 603 - -
Cco05g0956 1304 SMART LRR_sd22_2 685 717 - -
Cco05g0956 1304 SMART LRR_sd22_2 219 245 - -
Cco05g0956 1304 SMART LRR_sd22_2 757 786 - -
Cco05g0956 1304 SMART LRR_sd22_2 170 196 - -
Cco05g0956 1304 SMART LRR_sd22_2 291 317 - -
Cco05g0956 1304 SMART LRR_sd22_2 458 484 - -
Cco05g0956 1304 Gene3D Ribonuclease Inhibitor 145 216 IPR032675 -
Cco05g0956 1304 Gene3D Ribonuclease Inhibitor 217 477 IPR032675 -
Cco05g0956 1304 SMART serkin_6 1026 1298 IPR000719 GO:0004672(InterPro)|GO:0005524(InterPro)|GO:0006468(InterPro)
Cco05g0956 1304 FunFam LRR receptor-like serine/threonine-protein kinase GSO1 633 929 - -
Cco05g0956 1304 ProSitePatterns Serine/Threonine protein kinases active-site signature. 1148 1160 IPR008271 GO:0004672(InterPro)|GO:0006468(InterPro)
Cco05g0956 1304 Gene3D Ribonuclease Inhibitor 570 628 IPR032675 -
Cco05g0956 1304 Gene3D Ribonuclease Inhibitor 38 144 IPR032675 -
Cco05g0956 1304 SMART LRR_typ_2 711 732 IPR003591 -
Cco05g0956 1304 SMART LRR_typ_2 170 193 IPR003591 -
Cco05g0956 1304 SMART LRR_typ_2 291 315 IPR003591 -
Cco05g0956 1304 SMART LRR_typ_2 855 879 IPR003591 -
Cco05g0956 1304 SMART LRR_typ_2 685 709 IPR003591 -
Cco05g0956 1304 SMART LRR_typ_2 194 218 IPR003591 -
Cco05g0956 1304 SMART LRR_typ_2 530 552 IPR003591 -
Cco05g0956 1304 SMART LRR_typ_2 98 122 IPR003591 -
Cco05g0956 1304 SMART LRR_typ_2 757 781 IPR003591 -
Cco05g0956 1304 SMART LRR_typ_2 219 243 IPR003591 -
Cco05g0956 1304 SMART LRR_typ_2 553 577 IPR003591 -
Cco05g0956 1304 SMART LRR_typ_2 733 756 IPR003591 -
Cco05g0956 1304 SMART LRR_typ_2 601 624 IPR003591 -
Cco05g0956 1304 SUPERFAMILY L domain-like 57 367 - -
Cco05g0956 1304 PRINTS Leucine-rich repeat signature 685 698 - -
Cco05g0956 1304 PRINTS Leucine-rich repeat signature 222 235 - -
Cco05g0956 1304 Pfam Protein tyrosine and serine/threonine kinase 1030 1297 IPR001245 GO:0004672(InterPro)|GO:0006468(InterPro)
Cco05g0956 1304 SUPERFAMILY Protein kinase-like (PK-like) 1007 1298 IPR011009 -
Cco05g0956 1304 FunFam Leucine-rich repeat receptor-like protein kinase 38 190 - -
Cco05g0956 1304 FunFam serine/threonine-protein kinase BRI1-like 2 987 1101 - -
Cco05g0956 1304 ProSitePatterns Protein kinases ATP-binding region signature. 1032 1055 IPR017441 GO:0005524(InterPro)
Cco05g0956 1304 PANTHER LEUCINE-RICH REPEAT RECEPTOR PROTEIN KINASE EMS1 674 1302 IPR051564 GO:0016020(PANTHER)
Cco05g0956 1304 Gene3D Transferase(Phosphotransferase) domain 1 1102 1304 - -
Cco05g0956 1304 Pfam Leucine rich repeat N-terminal domain 39 72 IPR013210 -
Cco05g0956 1304 Pfam Leucine rich repeat 555 614 IPR001611 GO:0005515(InterPro)
Cco05g0956 1304 Pfam Leucine rich repeat 436 494 IPR001611 GO:0005515(InterPro)
Cco05g0956 1304 Pfam Leucine rich repeat 810 868 IPR001611 GO:0005515(InterPro)
Cco05g0956 1304 ProSiteProfiles Protein kinase domain profile. 1026 1304 IPR000719 GO:0004672(InterPro)|GO:0005524(InterPro)|GO:0006468(InterPro)
Cco05g0956 1304 SUPERFAMILY L domain-like 368 635 - -
Cco05g0956 1304 SUPERFAMILY L domain-like 643 918 - -
Cco05g0956 1304 Gene3D Phosphorylase Kinase; domain 1 988 1101 - -
Cco05g0956 1304 FunFam serine/threonine-protein kinase BRI1-like 2 1102 1304 - -
Cco05g0956 1304 CDD STKc_IRAK 1032 1301 - -
Cco05g0956 1304 Gene3D Ribonuclease Inhibitor 480 569 IPR032675 -
Cco05g0956 1304 Gene3D Ribonuclease Inhibitor 629 928 IPR032675 -
Cco05g0956 1304 Pfam Leucine Rich Repeat 760 781 IPR001611 GO:0005515(InterPro)
Cco05g0956 1304 Pfam Leucine Rich Repeat 221 243 IPR001611 GO:0005515(InterPro)
Cco05g0956 1304 Pfam Leucine Rich Repeat 687 708 IPR001611 GO:0005515(InterPro)
Cco05g0956 1304 Pfam Leucine Rich Repeat 413 433 IPR001611 GO:0005515(InterPro)
Cco05g0956 1304 Pfam Leucine Rich Repeat 643 661 IPR001611 GO:0005515(InterPro)
Cco05g0956 1304 Pfam Leucine Rich Repeat 172 194 IPR001611 GO:0005515(InterPro)
Cco05g0956 1304 Pfam Leucine Rich Repeat 100 122 IPR001611 GO:0005515(InterPro)
Cco05g0956 1304 Pfam Leucine Rich Repeat 391 410 IPR001611 GO:0005515(InterPro)
Cco05g0956 1304 Pfam Leucine Rich Repeat 531 553 IPR001611 GO:0005515(InterPro)
Cco05g0956 1304 Pfam Leucine Rich Repeat 293 315 IPR001611 GO:0005515(InterPro)
Cco05g0956 1304 Pfam Leucine Rich Repeat 341 363 IPR001611 GO:0005515(InterPro)
Cco05g0956 1304 Pfam Leucine Rich Repeat 711 733 IPR001611 GO:0005515(InterPro)
Cco05g0956 1304 Pfam Leucine Rich Repeat 735 757 IPR001611 GO:0005515(InterPro)
Cco05g0956 1304 FunFam Uncharacterized protein 367 631 - -
Cco05g0956 1304 FunFam leucine-rich repeat receptor protein kinase EMS1 217 366 - -
       

Duplication type information

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Cco05g0956 Cco-Chr5:8373359 Cco11g1766 Cco-Chr11:30386896 8.80E-69 dispersed
Cco11g0630 Cco-Chr11:6840316 Cco05g0956 Cco-Chr5:8373359 1.70E-40 dispersed
Cco01g0716 Cco-Chr1:7600847 Cco05g0956 Cco-Chr5:8373359 1.20E-90 transposed
Cco04g1347 Cco-Chr4:28812791 Cco05g0956 Cco-Chr5:8373359 2.00E-91 transposed
Cco05g1094 Cco-Chr5:9744968 Cco05g0956 Cco-Chr5:8373359 4.90E-78 transposed
Cco09g0341 Cco-Chr9:3012592 Cco05g0956 Cco-Chr5:8373359 3.50E-79 transposed
Cco09g0774 Cco-Chr9:7107221 Cco05g0956 Cco-Chr5:8373359 2.10E-68 transposed
Cco09g2058 Cco-Chr9:34984188 Cco05g0956 Cco-Chr5:8373359 2.70E-68 transposed
Cco11g0107 Cco-Chr11:1152940 Cco05g0956 Cco-Chr5:8373359 4.40E-81 transposed
Cco01g0293 Cco-Chr1:2855201 Cco05g0956 Cco-Chr5:8373359 2.30E-25 wgd
Cco10g2223 Cco-Chr10:35239310 Cco05g0956 Cco-Chr5:8373359 6.40E-58 wgd
       

Transcription factors information

Select Gene Hmm_acc Hmm_name Score E-value Regulatory Factors Family
86837 PF07714 PK_Tyr_Ser-Thr 9.40E-46 CL0016 Cco PK
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Cco05g0956 - - - 0.0