Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Cco05g0963 ATGCAGGCTGCTTTCATCCCTCCTTTGGCTGCGATCCTTCGAATTTCACTACCAGTCCAAGCTGAAGAAGTTCAAGAATGGTCCCCCCCTTACGCAATAGGGGTCGGGGCACCGATCATGTCAAAGCCTCCTGCCGAGCAAATTACTGAAGTTGGTTCTGAGTCTGCTGGTGATCCAGAAAAGGCTGCTGAACAGAGTGTCGAAGGAACACAGCCTACCGAATGTGTTCCGAAGTCCGAGGGTAAAGAAGTTGAAGAGACGTTTCAGTCGCAGCCGAACCGACCGAGATCACACAGAGCGATCCCCACAACCGCTAAAGGTAGCTGGAGCAGAGTTTTTTTCGATGTTTTTTCTTCCCTACTTCCGCTGCCAAAGCCTTACTTACTAGACGTCATAGGGGGCGACAAGGACCCGCCCAAGGGCAAGGCAAGCCGAAACCTCTCCACTGGAGAAATGGGAGTAAAGAACTTCTGGGATATCTTAGAATCGTGCAAGAAAACTCTCCCACTTCACCGTCTTCAGAATAAGAGGTTGTGCATCGATCTCTCATGTTGGATAGTTCAGCTTCAAAATGTAAGCAAGTCCCATTCCCGTTTGAATAATAAGATTTACTTGAAAGGGCTCTTTCACCGCCTTCGAGCTCTCATTGCCTTGAATTGCAGCCTTATTTTCGTTACAGATGGTTCAATTCCTGGGATTAAACTGTCAACTTATAGACGCCGCTTGAACAATGGAAATGAGGTTGCTCAAAATGATGCAAATCCCCAGCAAATATGCTCACTGAAAAGAAACAAGGGTTCTGAGTTCTCTTTAATGATAAAAGAGGCAAAAGCCTTAGGATTGGCGCTTGGTATCCCTTGTCTAGATGGGCTTGAGGAAGCTGAAGCACAATGTGCATTGCTAAATTCAGAATTCTTATGCGATGGATGTTTTACTTCAGATTCAGATGCTTTCCTTTTTGGTGCTAGGACGGTGTATAGGGATATCTGCCTTGGAGATTCCGGTCATGTAGTTTGTTATGAAATGGATGACATCGAAAGACAATTAGGATTCGGAAGGAACTCAATGATTACGTTGGCTCTACTTCTTGGGAGTGACTACTCGCAGGGCGTTTATGGCATGGGTCGCGATTCTGCCTGTCAGATTGTTAAAGCAGTAGGAGACAGTGCTGTCCTCCAAAAAATTGCATCTGAGGGACTGTCTTTCGCTAAGAAGGGGAAGAATTCCGAGAAGCAAGGACTTCCTAATTCTGGGAATGGACAGTATATGCATAAATGCGATCAGTTTTCAGAAGTCATTGATGCCTATTTGAAACCCAAATGCCACTCAGCTGATTCTGAAGCCGTGAGTAGGGTTCTTGTTCAGCACCCTTTTCAACGTATCAAACTTCAGCAGATATGCGCCGAATTTTTCGCATGGCTTCCTGAGAAAACAGATGAATACATTCTCCCAAAGGTAGCAGAAAGAGATCTACGGCGATTTGCAAACATTCGATCTAAAACATCAGAACTTGGTTTCAATATTCCACTTCAACAGGTACCAGTTAATTGTCCTGTTTCTGGAATTGTCAAGCACCGAAAAGTCCAAGGCAACGACTGCTATGAGGTTTCTTGGAAAAATATTGATGGACTTGATTCATCTGTTGTGCCAGCAGATCTCTTGCAGAGTGCCTGTCCCGAGATGATTATAGAATTTGAGGAGCAAAGGGCTGAAGGAAGAAAACAAAATAAGCGCAAAACTAAAACAAAGAAGTCGGAGGCTGCTGTGGCTGAAATTGATAAAAGACTTCAAACTTTGTTGCTTGATATTGAATCTGAAAGCAGGGCAGCTCATAATCTCTCCCAGGTTTCAATAGTTTCAGAGACTTCTGGCACTGGTGTTGATGAACTGAACCAAGAGCGGTTTCCTGACGTAGAACCAATCATTGTCGATCATGCTCGTAGGTGTAGCAAAGAGAGGATTGAGGTCATTAATCTCTTAAGCCCTTCACCTGCAATGCAAACCCGTAAGGCTTCAAAATTTCAACAGAAAAACAGTCAAAAGATTGATGTAATTGATTTGAGTGATACAGAAACTGATCAGTCACCTGAACATGAGAGAAAGTCAAGAGAGTTGAGATCTTTCTTAGCTACTTTAAAGGGTAAATGA 2148 43.95 MQAAFIPPLAAILRISLPVQAEEVQEWSPPYAIGVGAPIMSKPPAEQITEVGSESAGDPEKAAEQSVEGTQPTECVPKSEGKEVEETFQSQPNRPRSHRAIPTTAKGSWSRVFFDVFSSLLPLPKPYLLDVIGGDKDPPKGKASRNLSTGEMGVKNFWDILESCKKTLPLHRLQNKRLCIDLSCWIVQLQNVSKSHSRLNNKIYLKGLFHRLRALIALNCSLIFVTDGSIPGIKLSTYRRRLNNGNEVAQNDANPQQICSLKRNKGSEFSLMIKEAKALGLALGIPCLDGLEEAEAQCALLNSEFLCDGCFTSDSDAFLFGARTVYRDICLGDSGHVVCYEMDDIERQLGFGRNSMITLALLLGSDYSQGVYGMGRDSACQIVKAVGDSAVLQKIASEGLSFAKKGKNSEKQGLPNSGNGQYMHKCDQFSEVIDAYLKPKCHSADSEAVSRVLVQHPFQRIKLQQICAEFFAWLPEKTDEYILPKVAERDLRRFANIRSKTSELGFNIPLQQVPVNCPVSGIVKHRKVQGNDCYEVSWKNIDGLDSSVVPADLLQSACPEMIIEFEEQRAEGRKQNKRKTKTKKSEAAVAEIDKRLQTLLLDIESESRAAHNLSQVSIVSETSGTGVDELNQERFPDVEPIIVDHARRCSKERIEVINLLSPSPAMQTRKASKFQQKNSQKIDVIDLSDTETDQSPEHERKSRELRSFLATLKGK 715
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
5 8413800 8419463 + CcPI632755_05g009630.1 Cco05g0963 178591

Annotation

Select Seq ID Length Analysis Description Start End IPR GO
Cco05g0963 715 CDD CSD 522 569 - -
Cco05g0963 715 Gene3D - 153 350 - -
Cco05g0963 715 Pfam XPG I-region 284 366 IPR006086 GO:0004518(InterPro)
Cco05g0963 715 SUPERFAMILY Chromo domain-like 519 570 IPR016197 -
Cco05g0963 715 PANTHER FLAP ENDONUCLEASE FAMILY MEMBER 152 676 IPR006084 GO:0017108(PANTHER)
Cco05g0963 715 MobiDBLite consensus disorder prediction 665 683 - -
Cco05g0963 715 MobiDBLite consensus disorder prediction 665 715 - -
Cco05g0963 715 PRINTS Xeroderma pigmentosum group G/yeast RAD superfamily signature 175 189 IPR006084 -
Cco05g0963 715 PRINTS Xeroderma pigmentosum group G/yeast RAD superfamily signature 280 297 IPR006084 -
Cco05g0963 715 PRINTS Xeroderma pigmentosum group G/yeast RAD superfamily signature 301 321 IPR006084 -
Cco05g0963 715 PRINTS Xeroderma pigmentosum group G/yeast RAD superfamily signature 222 241 IPR006084 -
Cco05g0963 715 PRINTS Xeroderma pigmentosum group G/yeast RAD superfamily signature 356 371 IPR006084 -
Cco05g0963 715 MobiDBLite consensus disorder prediction 44 101 - -
Cco05g0963 715 SUPERFAMILY PIN domain-like 154 366 IPR029060 -
Cco05g0963 715 SMART xpgineu 281 351 IPR006086 GO:0004518(InterPro)
Cco05g0963 715 Gene3D - 352 411 - -
Cco05g0963 715 ProSiteProfiles Chromo and chromo shadow domain profile. 517 577 IPR000953 -
Cco05g0963 715 SUPERFAMILY 5' to 3' exonuclease, C-terminal subdomain 351 498 IPR036279 -
Cco05g0963 715 CDD PIN_GEN1 153 349 - -
Cco05g0963 715 FunFam Flap endonuclease GEN-like 1 351 409 - -
Cco05g0963 715 SMART xpgn3 152 248 IPR006085 GO:0004518(InterPro)
Cco05g0963 715 Pfam XPG N-terminal domain 152 242 IPR006085 GO:0004518(InterPro)
Cco05g0963 715 MobiDBLite consensus disorder prediction 684 715 - -
Cco05g0963 715 Gene3D - 517 584 - -
       

Pathway

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Cco05g0963 K15338 - - csv:101214962 960.288
       

Dupl-types

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Cco05g0963 Cco-Chr5:8413800 Cco09g0962 Cco-Chr9:9063037 1.90E-25 dispersed
Cco05g0963 Cco-Chr5:8413800 Cco04g2005 Cco-Chr4:34196418 8.90E-23 transposed
       

Deco-Alignment

Select Vvi1 Blo1 Blo2 Bda1 Bda2 Bpe1 Bpe2 Bma1 Bma2 Cmo1 Cmo2 Cma1 Cma2 Car1 Car2 Sed1 Cpe1 Cpe2 Bhi1 Tan1 Cmetu1 Lac1 Hepe1 Mch1 Lcy1 Cla1 Cam1 Cec1 Cco1 Clacu1 Cmu1 Cre1 Cone1 Cone2 Cone3 Cone4 Lsi1 Csa1 Chy1 Cme1 Blo3 Blo4 Bda3 Bda4 Bpe3 Bpe4 Bma3 Bma4 Sed2 Cmo3 Cmo4 Cma3 Cma4 Car3 Car4 Cpe3 Cpe4 Bhi2 Tan2 Cmetu2 Lac2 Hepe2 Mch2 Lcy2 Cla2 Cam2 Cec2 Cco2 Clacu2 Cmu2 Cre2 Lsi2 Csa2 Chy2 Cme2
Vvi16g654 . . Bda05g00064 . Bpe03g00291 . Bma10g01219 . . Cmo18g01265 . . . . Sed06g0576 . . Bhi01g01332 Tan01g0264 Cmetu11g0868 . Hepe07g0167 Mch10g0164 . . . . . . . . . . Cone14ag0094 Cone15ag0100 Lsi05g01238 . . Cme06g00987 Blo07g00415 . . . . . . . . . . . Cma18g01242 . Car18g01147 Cpe09g00095 . . . . . . . . Cla05g00870 Cam05g0959 Cec05g0963 Cco05g0963 Clacu05g0945 Cmu05g0902 Cre05g0986 . Csa03g01701 Chy06g00937 .
       

Syn-Orthogroups

Select Orthogroup Bda Bhi Blo Bma Bpe Cam Car Cco Cec Chy Cla Clacu Cma Cme Cmetu Cmo Cmu Cone Cpe Cre Csa HCH Hepe Lac Lcy Lsi Mch Sed Tan Vvi Total
OG0008050 2 1 1 2 1 1 1 1 1 1 1 1 1 1 1 1 1 2 1 1 1 1 1 1 1 2 1 2 1 1 35