Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Cco05g0964 ATGGGGAAACAGAAGCAACAAGTGATTTCTCGATTCTTTGCTCCAAAACCCAAGTCTCCATCTCTTTCTTCTTCTTCCTCCGCCGCCGCCTTAACTTCGCCGACCCAACCTTTTTCACCTCCTAAGATATCAGCCACAGTCAATTTCTCCCCTTCCAAACGCCTCATTTCTTCTGCATTCGCCTCTCAATCAACACCACCCAAATCCTCTAAACGCCCAAAACTCTCTCCTCATACCCAAAACCCTCTGCCTTCCGTTCCCAATGCCTCACTTCATAAAAGATTCCTCCACAAGTTCCTTGAACCCACGGATGACTCTTTCGAACCTTCTAATCAAAACCCCAGAATCTCAACGGTCCCTGATGTCAAATACACCCCTTTGGAGCTACAAGTTGTGGACCTTAAGAAGAGGTACCCTGATGTTCTTCTCATGGTGGAGGTTGGTTACAGGTATAGATTTTTTGGCCAAGATGCTGAAATAGCGGCTCGTGTTTTGGGTATTTATGCTCATTTGGATCATAATTTTATGACTGCGAGTATACCCACGTTTAGATTGAATGTGCATGTGAGGAGGCTGGTTAGTGCAGGGTATAAGGTGGGTGTTGTTAAGCAAACCGAAACTGCTGCGATTAAGGCTCATGGGTCGAATAAGTTAGGCCCCTTTTGTAGGGGATTATCGGCTTTGTATACTAAATCAACATTGGAGGCAGCCCAGAATTTTGGGGGAGCTGAAGAGGGATGTGGTGGAGAGAGTAATTACTTGTTCTGTGTGGTTGAAAATAGTATGTTGGTGGATAACTTGGACTTTAGAATCGAAAATGGGGTTGATGTGAAAATTGGGATGGTTGCCATGGAGATATCAACTGGGGATGTTATTTATAGGGAATATGATGATAACTTTATGAGAAGTGGGCTTGAGGCAATGCTCTTGAGCTTGTCTCCTGCTGAGTTACTTCTTGGGGATCCCATATCAAAGCCAACAGAGAAGTTATTACTAGGTTATGCTGGACCTGCTTCAAATGTCCGTGTGGAGCATGTTTCACGAGATTGCTTTAAAGATGGCAGTGCACTTGCTGAAGTGATGTCTTTATATGAAAACATTGACAAAGATAACTTAGCCGAACATAACAACCCTGAAATGGTGTTGGTTGGACAAAAAAGTGATCGCACAGCAATTAAGGAAATAGTGAACATGCCAAATTTAGCTCTTCAAGCATTGGACTTAACCATTCGTCACTTGAAGCAGTTTGGTTTAGAAAGGATTGTGTCTTTGGGATCTTCTTTTAGGCCATTCTCATGCAAAATGGAGATGACCCTCTCAGGCAATACACTTACACAACTCGAGGTTTTGAAGAATAATGATGACGGTTCACAAACTGGATCTTTATTACAGTGCATGAATCATACTCTTACAATATTTGGTTCAAGGCTTCTTCGCCAATGGATAACACATCCTTTATGTGATAGAGACATGATAATTGCTCGTCAAGAGGCTGTTTCCGAGATTGCTGCATCTATGGCATCTTCAAAAGTATCTCAAAATAACAGTGTGTTGGATGAAGAAGATTCTGATGTAATGGTCATTGAACCAGAATTGAATTATATACTTTCTTCGGTGTTGACAACCTTGGGAAGGGCACCAGATATTCAGCGTGGAATAACAAGAATCTTTCACCGAACAGCAGCCCCATCAGAGTTCATTGCAGTTATTCAAGCTATTCTATTTGCGGGAAAACAGCTTCAGCAGTTTCACATTCATGAAGAGGATGACAATTATTCCAGTGAAAGTATGATTGGCTCCAAGCTCCTCAGAAAGCTGATTTCATCTGCTTCTTCCTCCAGTTTAATAAACATTGCCGCAAAGCTTTTGTCAATGATCAGCAAAGAAGCTGCAGATCAAGGGGACTTTCCTAACCTAATGATCATCTATGGTGACCAATTTCCAAAGGTTGCTAGAGCTCGGAAGGAGGCTCAATCTGCAAGAGAGAAATTGGATTCTCTGATCACCTTATACCGCAAGCACCTTGGAATGCGGAAGTTGGAGTTCACTAGTGTGTCTGGAACTACACATTTGATTGAGTTAGCCTTAGATGTAAAGGTGCCTTCAAATTGGGTTAAGGTCAATAGTACCAAGAAAACCGTAAGGTATCATCCACCTGAAATATTGGCTGCGTTAGACGAGCTATCGCTGGCAAATGAGGAGCTCATGGTGGCATCTCGTGATGCTTGGGATGGCTTTCTAAATGGATTCAGCGGATATTATGCAGAGTTCCAAGCTGCTGTTCAAGCATTGGCTTCCATCGATTGTCTGTATTCGTTAGCAATTCTCTCAAGAAATAAGAACTATGCTCGCCCAGAGTTTGTGCATGATGATGAACCTGCTCAGATACTTATATGCTCCGGACGCCATCCGGTTTTGGAAGGTACATTGCAAGGCAATTTTGTCCCAAACGACACAAATTTGGACGTGAATGGAGAGCATTGTCAAATTGTAACAGGACCAAACATGGGGGGGAAAAGTTGCTACATTCGACAAGTTGCTCTCATTGCTCTAATGGCTCAGGTTGGTTCCTTTGTACCGGCACTCTCTGCCAAACTTCATGTCCTGGATGGCATATACACTCGAATGGGTGCTTCTGACAGTATTCAACAAGGTAGAAGCACTTTCTTAGAAGAAATGACTGAGACTTCACATATACTCCATCATTCCACATCGCGTTCCTTGGTCATCATTGACGAACTTGGGAGAGGTACAAGCACCCACGATGGTGTGGCCATTGCATATGCAGCTTTGCATAATCTTCTCCAGCAGAAGAAATGTTTGGTCCTTTTTGTCACCCACTATCCTAAAGTTGCTGAGATTGCAAAGGAGTTCCCAGCATCTGCGGGGGTATACCATGTTTCATATCTTACATCACACAAAAATCCAAGCTTGTCGGGCCCAAAATCGACTGAGGAGGATGTGACTTACCTATATAAACTTGTTCCTGGTGTTGCGGAGAGTAGTTTTGGTTTCAAGGTTGCCGAACTTGCACAGATACCTTTATCATGTATTGCACGGGCCACAGAGATGGGGGTCTGGTTAGAAGAAATAGTAACAAGAAGAGCACTGCGTAAATCCACAGAACAGCATTCGCAAGAAGCATCAGCCAAGGGGTGGGAATGGGAAAGCTCCCAGTGCTTCCTCGAAGATGTTGATGCGTCAGAAGAAAGAATTGATGATTACGAGAAATTCTTTCTGTTCTTGAAAGCTACAATATGTTCTGCTGATAACATGGGAAAAAGGTGCCATCAAATTTACCAAGCGAGAAGCATGGCCATGGACTTGTTAGGAAGGTGA 3339 43.22 MGKQKQQVISRFFAPKPKSPSLSSSSSAAALTSPTQPFSPPKISATVNFSPSKRLISSAFASQSTPPKSSKRPKLSPHTQNPLPSVPNASLHKRFLHKFLEPTDDSFEPSNQNPRISTVPDVKYTPLELQVVDLKKRYPDVLLMVEVGYRYRFFGQDAEIAARVLGIYAHLDHNFMTASIPTFRLNVHVRRLVSAGYKVGVVKQTETAAIKAHGSNKLGPFCRGLSALYTKSTLEAAQNFGGAEEGCGGESNYLFCVVENSMLVDNLDFRIENGVDVKIGMVAMEISTGDVIYREYDDNFMRSGLEAMLLSLSPAELLLGDPISKPTEKLLLGYAGPASNVRVEHVSRDCFKDGSALAEVMSLYENIDKDNLAEHNNPEMVLVGQKSDRTAIKEIVNMPNLALQALDLTIRHLKQFGLERIVSLGSSFRPFSCKMEMTLSGNTLTQLEVLKNNDDGSQTGSLLQCMNHTLTIFGSRLLRQWITHPLCDRDMIIARQEAVSEIAASMASSKVSQNNSVLDEEDSDVMVIEPELNYILSSVLTTLGRAPDIQRGITRIFHRTAAPSEFIAVIQAILFAGKQLQQFHIHEEDDNYSSESMIGSKLLRKLISSASSSSLINIAAKLLSMISKEAADQGDFPNLMIIYGDQFPKVARARKEAQSAREKLDSLITLYRKHLGMRKLEFTSVSGTTHLIELALDVKVPSNWVKVNSTKKTVRYHPPEILAALDELSLANEELMVASRDAWDGFLNGFSGYYAEFQAAVQALASIDCLYSLAILSRNKNYARPEFVHDDEPAQILICSGRHPVLEGTLQGNFVPNDTNLDVNGEHCQIVTGPNMGGKSCYIRQVALIALMAQVGSFVPALSAKLHVLDGIYTRMGASDSIQQGRSTFLEEMTETSHILHHSTSRSLVIIDELGRGTSTHDGVAIAYAALHNLLQQKKCLVLFVTHYPKVAEIAKEFPASAGVYHVSYLTSHKNPSLSGPKSTEEDVTYLYKLVPGVAESSFGFKVAELAQIPLSCIARATEMGVWLEEIVTRRALRKSTEQHSQEASAKGWEWESSQCFLEDVDASEERIDDYEKFFLFLKATICSADNMGKRCHQIYQARSMAMDLLGR 1112
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
5 8419826 8427406 - CcPI632755_05g009640.1 Cco05g0964 178592

Annotation

Select Seq ID Length Analysis Description Start End IPR GO
Cco05g0964 1112 Gene3D DNA repair protein MutS, domain I 117 242 IPR016151 GO:0005524(InterPro)|GO:0006298(InterPro)|GO:0030983(InterPro)
Cco05g0964 1112 FunFam DNA mismatch repair protein MSH3 782 1057 - -
Cco05g0964 1112 FunFam DNA mismatch repair protein 248 434 - -
Cco05g0964 1112 ProSitePatterns DNA mismatch repair proteins mutS family signature. 907 923 IPR000432 GO:0005524(InterPro)|GO:0006298(InterPro)|GO:0030983(InterPro)
Cco05g0964 1112 Gene3D - 624 750 - -
Cco05g0964 1112 Pfam MutS domain V 829 1024 IPR000432 GO:0005524(InterPro)|GO:0006298(InterPro)|GO:0030983(InterPro)
Cco05g0964 1112 Pfam MutS family domain IV 652 731 IPR007861 GO:0005524(InterPro)|GO:0006298(InterPro)|GO:0030983(InterPro)
Cco05g0964 1112 Pfam MutS domain I 125 235 IPR007695 GO:0005524(InterPro)|GO:0006298(InterPro)|GO:0030983(InterPro)
Cco05g0964 1112 FunFam DNA mismatch repair protein Msh3 624 750 - -
Cco05g0964 1112 SMART DNAend 457 809 IPR007696 GO:0005524(InterPro)|GO:0006298(InterPro)|GO:0030983(InterPro)
Cco05g0964 1112 Gene3D - 439 774 - -
Cco05g0964 1112 PIRSF Msh6 119 1075 IPR017261 GO:0006298(InterPro)|GO:0030983(InterPro)
Cco05g0964 1112 Coils Coil 650 670 - -
Cco05g0964 1112 MobiDBLite consensus disorder prediction 17 46 - -
Cco05g0964 1112 SUPERFAMILY DNA repair protein MutS, domain III 442 780 IPR036187 -
Cco05g0964 1112 Gene3D - 782 1064 IPR027417 -
Cco05g0964 1112 SUPERFAMILY P-loop containing nucleoside triphosphate hydrolases 782 1025 IPR027417 -
Cco05g0964 1112 Gene3D MutS, connector domain 248 436 IPR036678 GO:0005524(InterPro)|GO:0006298(InterPro)|GO:0030983(InterPro)
Cco05g0964 1112 SMART mutATP5 826 1026 IPR000432 GO:0005524(InterPro)|GO:0006298(InterPro)|GO:0030983(InterPro)
Cco05g0964 1112 FunFam DNA mismatch repair protein 116 245 - -
Cco05g0964 1112 MobiDBLite consensus disorder prediction 1 46 - -
Cco05g0964 1112 PANTHER DNA MISMATCH REPAIR PROTEIN MUTS FAMILY MEMBER 128 1046 IPR045076 GO:0003690(PANTHER)|GO:0005524(InterPro)|GO:0005634(PANTHER)|GO:0006298(InterPro)|GO:0006298(PANTHER)|GO:0006312(PANTHER)|GO:0030983(InterPro)|GO:0140664(InterPro)
Cco05g0964 1112 MobiDBLite consensus disorder prediction 58 87 - -
Cco05g0964 1112 SUPERFAMILY DNA repair protein MutS, domain I 119 233 IPR016151 GO:0005524(InterPro)|GO:0006298(InterPro)|GO:0030983(InterPro)
Cco05g0964 1112 Pfam MutS domain III 442 774 IPR007696 GO:0005524(InterPro)|GO:0006298(InterPro)|GO:0030983(InterPro)
Cco05g0964 1112 SUPERFAMILY DNA repair protein MutS, domain II 250 378 IPR036678 GO:0005524(InterPro)|GO:0006298(InterPro)|GO:0030983(InterPro)
Cco05g0964 1112 MobiDBLite consensus disorder prediction 58 88 - -
       

Pathway

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Cco05g0964 K08736 - - csv:101214720 1866.28
       

Dupl-types

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Cco05g0446 Cco-Chr5:3632190 Cco05g0964 Cco-Chr5:8419826 5.10E-20 transposed
Cco06g1698 Cco-Chr6:27533081 Cco05g0964 Cco-Chr5:8419826 2.40E-52 transposed
Cco09g0504 Cco-Chr9:4415970 Cco05g0964 Cco-Chr5:8419826 5.40E-77 transposed
Cco10g0458 Cco-Chr10:5438008 Cco05g0964 Cco-Chr5:8419826 2.60E-34 transposed
Cco11g0270 Cco-Chr11:2653804 Cco05g0964 Cco-Chr5:8419826 1.10E-64 transposed
Cco01g0442 Cco-Chr1:4396978 Cco05g0964 Cco-Chr5:8419826 5.10E-35 wgd
       

Deco-Alignment

Select Vvi1 Blo1 Blo2 Bda1 Bda2 Bpe1 Bpe2 Bma1 Bma2 Cmo1 Cmo2 Cma1 Cma2 Car1 Car2 Sed1 Cpe1 Cpe2 Bhi1 Tan1 Cmetu1 Lac1 Hepe1 Mch1 Lcy1 Cla1 Cam1 Cec1 Cco1 Clacu1 Cmu1 Cre1 Cone1 Cone2 Cone3 Cone4 Lsi1 Csa1 Chy1 Cme1 Blo3 Blo4 Bda3 Bda4 Bpe3 Bpe4 Bma3 Bma4 Sed2 Cmo3 Cmo4 Cma3 Cma4 Car3 Car4 Cpe3 Cpe4 Bhi2 Tan2 Cmetu2 Lac2 Hepe2 Mch2 Lcy2 Cla2 Cam2 Cec2 Cco2 Clacu2 Cmu2 Cre2 Lsi2 Csa2 Chy2 Cme2
Vvi16g655 . . . . . . . . Cmo16g00135 . . . . . Sed08g0333 . . Bhi01g01330 Tan01g0263 Cmetu06g0071 . Hepe07g0166 Mch10g0163 . Cla01g00411 Cam01g0429 Cec01g0420 Cco01g0442 Clacu01g0430 Cmu01g0412 Cre09g2100 Cone1ag1153 Cone5ag0862 . . Lsi05g01236 . . Cme06g00988 . Blo09g00106 . . . . . . . . . Cma16g00130 . Car16g00115 . . . . . . . . . . Cla05g00871 Cam05g0960 Cec05g0964 Cco05g0964 Clacu05g0946 Cmu05g0903 Cre05g0987 . Csa03g01702 Chy06g00938 .
       

Syn-Orthogroups

Select Orthogroup Bda Bhi Blo Bma Bpe Cam Car Cco Cec Chy Cla Clacu Cma Cme Cmetu Cmo Cmu Cone Cpe Cre Csa HCH Hepe Lac Lcy Lsi Mch Sed Tan Vvi Total
OG0007018 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 2 1 1 1 1 1 1 1 1 1 5 2 1 36