Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Cco05g0978 ATGAGTCCGCCCGCCGTCGAACCTCCGTTACTTCTTCTTTTCCTGCTTGCTGCAGCGTTGCGGTGCCCTCTCGCCGGAGCGCGCCTTCTGGTGGAGATGACGGTGGTCCGAAACGCCTCTTCCATCGGAGCCTTTTGTTTGGACGGAAGCTTGCCGGCGTATCACCTGGACAGAGGATTCGGCGCCGGGGCGGGAAACTGGCTTTTACAGTTCGAGGGTGGTGGGTGGTGCAATGATGTAAAGTCTTGTTTGGAGAGAGCGAATAGTCGAAGAGGATCAACACGTTTGATGACCAAATGGGAAGACTTCTCTGGCATTCTTAGCAACAATGCTTCTCTTAATCCAGATTTTTATAACTGGAACCGTGTGAAACTCAGGTACTGTGATGGAGCCTCATTTGCTGGAGATGCCTTGTTTGACAATGGGACATCGCTGCTTTATTTCAAAGGGCAAAAGATATGGGAATCCATCATTCTTGACCTTCTACCAAAAGGGTTGGGGACAGCAAGGAAGGCTCTGCTTTCTGGTTGCTCTGCTGGAGGTTTAGCAACTTTTCTTCATTGTGAAAATTTCACCAAGTATTTGCCAAGGAATGCTAGTGTCAAATGCTTGAGTGATGCTGGATTTTTTCTTGACTTAAGAGACATTGGTCTAAACCACACAATGAGGAACTTTTATAGGGATCTTGTGGCTCTTCAGGGGATGGAGCATAATTTGAATGAAAACTGCACAGCCTCCTCTTACTTTCCAGAATTGTGCATATTCCCTCAGTATTCATTGAAGTACATAACAACTCCATTTTTCATTCTGAATTCAGCATATGATGTTTACCAATTTCATCATGGGTTGGTGCCACCATCTGCTGATTTACATGGACATTGGAACCATTGCAAATTTAATCCAGCAGAGTGTAGTGAACTACAGATTCAGGTATTGCAAGGTCTAAGAATGAGTATGCTTTCTGCATTAAGATTATTCTATGAATATTCAAGCAGAGGAGGAATGTTCATAAATTCATGTTTTGCTCATTGCCAAAGTGAGTCACAAGACACATGGTTTGCTGACGACTCCCCAACAATAGACAACAAGACTATAGCAGAAGCAGTTGGAGATTGGTATTTTAGCAGGAGAAACACAAAGGAAATTGATTGTGCTTATCCATGTGACTCTACTTGCCATAATATTATACCATAA 1194 43.8 MSPPAVEPPLLLLFLLAAALRCPLAGARLLVEMTVVRNASSIGAFCLDGSLPAYHLDRGFGAGAGNWLLQFEGGGWCNDVKSCLERANSRRGSTRLMTKWEDFSGILSNNASLNPDFYNWNRVKLRYCDGASFAGDALFDNGTSLLYFKGQKIWESIILDLLPKGLGTARKALLSGCSAGGLATFLHCENFTKYLPRNASVKCLSDAGFFLDLRDIGLNHTMRNFYRDLVALQGMEHNLNENCTASSYFPELCIFPQYSLKYITTPFFILNSAYDVYQFHHGLVPPSADLHGHWNHCKFNPAECSELQIQVLQGLRMSMLSALRLFYEYSSRGGMFINSCFAHCQSESQDTWFADDSPTIDNKTIAEAVGDWYFSRRNTKEIDCAYPCDSTCHNIIP 397
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
5 8536849 8549683 - CcPI632755_05g009780.1 Cco05g0978 178606
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Cco05g0978 397 PANTHER NOTUM-RELATED 27 394 IPR004963 GO:0009505(PANTHER)|GO:0016787(InterPro)|GO:0052793(PANTHER)|GO:0071555(PANTHER)
Cco05g0978 397 Pfam Pectinacetylesterase 28 377 IPR004963 GO:0016787(InterPro)
       

Duplication type information

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Cco04g1008 Cco-Chr4:25698911 Cco05g0978 Cco-Chr5:8536849 1.40E-114 dispersed
Cco05g0978 Cco-Chr5:8536849 Cco07g1194 Cco-Chr7:25807149 3.70E-95 dispersed
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Cco05g0978 K19882 - csv:101216160 763.837