Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Cco05g0979 TTCGGAGTGGCTAAGAGGGAGGGTCCTGAGTTCGAAGAGCTTCAAAGTCCAAGGTCCCGTCGTCCTCTTGTCTGGCTACTGAGGAAACCCGGGGATTGTCTCGAGAAATTAGTATTTGAAGCCTTACGACGGTTGCATGAATTTCTCTGGTCAAGTTTACATCAGAGAAAGAATGCAACTTTGGTTATTATGGAATCTTTATGGAAACTTCTATATTTGCTGGAACCTGCACCTGCCACTCTCATTGTGACTGCAGTGGCTGTTACATTTGGATCTGCTTTCCGGGCCCTAAATTATGGGAAGGAAATGGAGCGAAACCGTGACTTTTCAGAAGCATCCATTACCTTAGACAGATCCCAAGCGCTAATGATCCCAGTTATGAGTTCTTGCAGTTTGCTTTTGATGTTCTACCTGTTTTCTTCTGTGTCCCAACTTCTTACTGCATTCACAGCAGTTGCTTCTGTCTCGTCCCTCTTCTTCTGTTTATCTCCTTACATGGCCTATTTAAAATCCCAGTTTGGATTGGCTGATCCTTATGTATCAAGGTGTTGTTCCAAGTCATTTACACGTATTCAAGGGTTGTTGTTGTTGGCATGTTCTGGTTTAGTTGCAGCTTGGCTTGTTTCTGGGCATTGGATATTAAACAATTTGTTAGGAATTTCAATATGTGTTGCATTTGTCAGCCATGTACGTCTCCCTAATGTTAAAATATGTGCAATGCTCCTAGTTTGTCTCTTTGTATATGATATATTCTGGGTCTTCTTCTCTGAGAGATTCTTTGGGGCAAATGTAATGGTATCTGTAGCAACTCAGCAAGCATCAAATCCTGTTCACACAGTTGCTAATAGTCTGAGTCTTCCTGGGCTGCAATTGATAACTAAGAAGCTGGAGTTACCTGTCAAGATAGTCTTTCCAAGGAACTTACTTGGTGGAGTAATTCCAGGAAAAAATGCCACTGATTTCATGATGCTTGGTCTTGGTGATATGGCAATTCCTGCCATGTTTCTAGCTCTAGTTCTTTGTTTTGACCACCGGAAAAGTAGGGATACAGTCAATCTCTTGGATTTCCACACAAGGGGCCACAAGTACATTTGGTATGCCCTGCCCGGATATGCCATTGGACTGGTGACTGCTCTAGCAGCTGGCGTTTTGACTCACTCACCTCAACCTGCTCTATTGTATCTGGTGCCTTCTACATTAGGACCTGTTATTGCAATATCTTGGATAAGGAAGGATTTTTTGGAGTTATGGGAAGGTCCCTCGCCGAACCCCAATGATAAAGTAGTAGAAGTGACACCTCTTTGCGGGGTGTTCAATGAAAACCCTTTATCGTATGTGGTCTCGGTTGACGGTTTCAACTTCCTTATCGACTGTGGTTGGAACGACCACTTCGATCCTGCTCTTCTTCAACCTTTATCCAGGGTGGCATCCACGATTGATGCAGTTTTGATATCACATCCTGATACACTTCACCTCGGTGCTCTTCCTTATGCCATGAAACAACTTGGACTTTCTGCTCCAGTTTATTCCACTGAACCCGTTTACCGATTGGGTCTTCTTACAATGTATGATCAGTTTATCGCGAGGAAGCAAGTATCAGAGTTTGATCTATTTACGCTGGATGATATCGATTCTGCTTTCCAAGCTGTAACCAGACTAACATACTCCCAGAATCATCATCTTTCAGGCAAAGGAGAGGGAATAGTTATTGCCCCTCATGTGGCTGGGCATCTATTGGGTGGAACTCTATGGAAGATAACTAAGGATGGAGAAGATGTTATATATGCTGTTGACTTCAACCACCGCAAGGAAAGGCATCTGAATGGAACCATTCTAGAGTCATTTGTGCGACCTGCTGTATTGATCACTGATGCTTATAATGCTCTAAATAATCAGCCATACAGACGGCAAAAGGACAAAGAATTTGGAGATACTATTCAGAAGACCTTAAGAACTAATGGAAATGTCTTACTTCCTGTTGATACTGCTGGGCGAGTGTTGGAGCTTATTCAAATTTTGGAATGGTACTGGGAAGAGGAAAGTTTAAACTATCCCATTTTCTTTTTAACTTACGTTGCATCCAGCACAATTGATTATATCAAGAGTTTCCTAGAGTGGATGAGTGATACAATAGCAAAGTCTTTTGAACACACACGGAGCAACGCTTTTCTTCTCAAGCATGTTACCCTTCTAATCAACAAAAGCGAACTTGATAATGCTCCAGATGGTCCAAAGGTTGTTTTAGCATCAATGGCGAGTTTGGAAGCTGGTTACTCACATGACATTTTTGTTGACTGGGCAATGGATGCCAAAAACCTCGTCCTTTTTTCTGAAAGAGGCCAGTTTGGCACTTTGGCCCGCATGCTTCAAGCAGATCCACCTCCCAAAGCTGTTAAGGTAACTGTGTCTAAGAGAGTCCCTTTGACTGGAGATGAGCTTATTGCTTATGAAGAAGAGCAAAACAGGAAAAAGGAAGAAGCTCTTAAGGCTAGTTTGCTTAAGAAGGAACAATCTAAAGCATCTCATGGAACTGAGAACGATACCAGCGATCCAATGATCATTGATGCTAGCAGTAATGTAGCACCAGATGTAGGGGGTTCACATGGAGGTGCATACAGAGACATACTAATTGATGGCTTTGTTCCTCCTTCAACCAGCATTGCTCCAATGTTTCCCTTTTATGAAAACACCTCCGCGTGGGATGATTTTGGTGAAGTAATCAATCCTGATGATTATGTAATTAAGGATGAAGATATGGACCAATCAGCGATGCATGCTGGTGGGGATGTGGATGGAAAACTAGATGAAACTGCTGCTAACTTGATTCTGGATATGAAGCCTTCGAAAGTTATATCTAAGGAATTGACAGTCCAAGTTAAATGCTCGTTGCGTTACATGGATTTTGAAGGTCGTTCAGATGGGAGATCAATTAAATCAATACTCTCCCACGTTGCTCCCTTGAAGCTTGTTTTGGTGCATGGAACCGCAGAGGCCACTGAGCATCTTAAGCAACATTGTCTTAAAAATGTCTGTCCCCATGTCTATGCCCCCCAAATTGAAGAAACGATTGATGTTACTTCTGATTTGTGTGCATATAAGGTACAACTTTCAGAGAAGCTGATGAGTAATGTGCTGTTTAAGAAGCTAGGAGATTACGAAATCGCTTGGCTTGATGCTGAAGTAGGGAAGACCGAGAATGGAACATTGTCTTTACTTCCCCTCTCAAAGGCTGCTTCGCCTCATAAATCTGTTCTTGTTGGTGATTTGAAAATGGCCGACTTCAAACAATTTCTGGCCAGCAAGGGAATACAGGTTGAATTTGCTGGGGGTGCTTTGAGATGTGGCGAGTATGTTACCCTACGCAAGGTTACAGATGCAAGTCAAAAGGGTGGTGGTTCTGGTACACAGCAAGTTGTCATTGAAGGGCCCTTATGTGAGGATTATTATAAAATTCGGGAACTTTTGTATTCGCAATTTTATTTGTTATATTCAACCTCAAATTTTCTTTTTTGCAATTTCAAGTTTGAATTATCCGCAAGAGGATCATTCATGGCTTCCACTCCCCCCACGTGTTCACCCAGCTCTCTTCAGCTTCGTCTCGCTCTCAATTGCAAGAATTGCGGCAAATTCCCTTCAGTTCTTGTTCGGGCGGGAGTGAGGAAATTGGATCCTCGCCTCCGCGTAATTTGTCACCCTATTGTTCATAATGGCGCCAAAATCGAGAGAGGAAATGGACTTCGTCGTATTGGAGTTTGTTTTGCTGGATCGGAGTCGACGGCTGATGGATTCTCTGGGTGGTCGGAATCGGATTCCCAGGGAGAGGCTTTGGACTTGCGGAGAAAGAAGTGGTTTGGAGGATTGGTGGGGATTGGAATTACTGGATTCATCCTTTTCTCCGGAATCACCTTTGCAGCATGGTCAATAAACAAGCAGAATAGTTCCAGACAAAAACCGCTGATGGAGGCCTTAAGTACGCAGCAAGAATTATTGTTGGACTCTGATACTGTTAATGATAAGCTTGGTGAAGATGAAAAGGAAGATAACAGTTTGAAGGCAGATGATGAAACTCTCACTGGTGAAACAGGTAACCAAGAGGACTCTTGTTCATGTACAGAAAATGAAGAAACTCTCAACAAAAATAGAGTTGGTGACAGTGTTGATGTTGAGGAGTTAGCAGAAAATGATGTTGAATCTTCATCCAGCAATAACGATGTCAATAATGTTGCTTCCTTGCAAGAAGATTTCCAATCTGATTCCTCACTAACTGTTACATCAGTTGCTGCCGGAAGTTTGAGTACACTTATCTCACCTGAATCTGAGTTTGATTCTAACGTAGCTTCTTGTTTTAAAGATGTAAACAACTGTCATTCTGGTGTAGAAGTCTTAACTTCTGAACCTGAAATGAATATATTGAAAGATGAACCAGACAACTTGCCTAACCCTAATACTAATTCATTAAACCTTAAAACTGATATTCGGGATGAAAGACCTGACACTAGTGAAAATTATGATTTCAGCTCTAATAAGTTACCAGTGTATGATGATAGTTCATCAAACTATAATTCTGGCAACCAGGATGAGACACTTGGTCCTGTAAATGAAATTACAGATTCTTCATTGGAAGGATTTTCTAGCATATCTGGCGACACAACCAAGGAATCAGGATTTTTTGACAGGGAGACTGTGGCTGAATCATCTGAAGGAGTTCTGAGCCCCAGCAAAACTGAACAGCTTTTATCTGAGGATACTGCATCAAACATAGAACAGCAAATAGAAAGAGGATTATCTGAAGCAGTATTAGTCTCTATCACAGATTATCCATCGGCAGATGATCAAGAGAAAAATCATGAAACTATCACAAATACTACTGCTGCCAAACTGGAACTACAAGAGATTTTATTTTCTTCTGCAGGTGTTCCTGCTCCTTTGGTTTCTGCAGCTGTTAAAACACTTCCCGGCAAGGTCCTAGTTCCTGCAGTAGTAGATCAGGTTCAGGGGCAGGCATTGGCAGCACTGCAAGTTTTAAAGGTGATAGAGGCTGAGGTTGAACCTAGTGATCTATGTACTCGTCGGGAATATGCTCGTTGGCTGGTGTCTGCAAGCAGTGCTCTTTCGAGGAACACAACATCCAAAGTATACCCAGCAATGTATATAGAGAATGTTACCGAGCTTGCTTTTGATGATATAACCCCCCAAGACCCTGATTTTGCATCTATTCAAGGTTTGGCAGAAGCTGGACTGATTTCAAGCAAGCTTTCGAGACATGATATTTGTTCTTCATTGGACGAAGACCAGGGTCCTTTATATTTCTCTCCCGAAAGCCCCCTATCACGTCAAGATCTTGTGAGTTGGAAGATGGCCCTTGAAAAAAGACAGCTTCCAGAGGCAGATAGAAAGATGCTCCACCAAGTTTCTGGATTTATTGATACTGATAAGATCCATCCAGATGCTTGTCCTGCACTTGTTGCTGATCTTTCTGTAGGAGAACAGGGAATAGTAGCTCTTGCATTTGGATATACAAGGCTTTTCCAGCCAGATAAGCCTGTAACAAAAGCACAAGCTGCCATTGCTCTTGCAACTGGGGAGGCTTCTGATATAGTAAGTGAGGAACTTGCAAGGATTGAAGCTGAATCAATGGCAGAAAATGCTGTTGCTGCGCATAGTGCTTTGGTAGCTCAAGTTGAGAAAGATATTAATGCTAGCTTTGAGAAAGAACTTTCCATTGAAAGAGAAAAGGTTGCGGCTGTGGAGAAAATGGCAGAAGAGGCAAAGCAAGAATTGGAAAGATTAAGATCCGAAAGAGAGAGAGATAGTATCACCTTGATGAGGGAACGCGCTTCTATTGAATCTGAGATGGAAGTTCTTTCAAGATTAAGGAATGAGTTGGAGGAGCAGTTGCAAGGCCTGCTGAGTAATAAAGTAGAGGTATCCTTTGAAAAGGAAAGAATCAACAAACTCAGGAAAGAAGCTGAAATTGAAAATCAGGAGGTTTCCCGCCTGCAGTATGAGCTTGAAGTTGAGAGAAAGGCGTTGTCTATGGCCAGAGCTTGGGCCGAGGACGAAGCAAAAAGAGCAAGAGAACAAGCAAAAGCACTCGAAGAGGCTAGGGATCGCTGGGAAAAGCATGGCATCAGAGTAGTCGTCGACAGTGATCTCCGTGAACAAGAATCTGCTGGCAATACCTGGCTTGATTCTAGCAAACAGTTTGCAGTCGAAGAAACCACAGACAGGGCTGAGAACTTAATGGAGAAGCTGAAAAGAATGGCTACAGAAGTAAGAGGGAAATCGAGAGATGTAATCGAGAAGGTCATCGAGAAGATAGCTTTACTCGTATCAAACTTGAGACAATGGATTTCAAAAACTGGAGAACAGGCTGAAGATCTAAAGAATGTGGCGATTTCAAAGGCAAGTAGATCAGCAACAGAATTGCAACAGAGCACTACAGAGTTGAGCTTGGCCCTGAAGGAGGGAGCAAAGCGTGTTGTGGGAGATTGTAGGGAAGGAGTAGAGAAAATTACCCAAAAATTTAGAACATCTTATGGTTAA 6546 42.44 FGVAKREGPEFEELQSPRSRRPLVWLLRKPGDCLEKLVFEALRRLHEFLWSSLHQRKNATLVIMESLWKLLYLLEPAPATLIVTAVAVTFGSAFRALNYGKEMERNRDFSEASITLDRSQALMIPVMSSCSLLLMFYLFSSVSQLLTAFTAVASVSSLFFCLSPYMAYLKSQFGLADPYVSRCCSKSFTRIQGLLLLACSGLVAAWLVSGHWILNNLLGISICVAFVSHVRLPNVKICAMLLVCLFVYDIFWVFFSERFFGANVMVSVATQQASNPVHTVANSLSLPGLQLITKKLELPVKIVFPRNLLGGVIPGKNATDFMMLGLGDMAIPAMFLALVLCFDHRKSRDTVNLLDFHTRGHKYIWYALPGYAIGLVTALAAGVLTHSPQPALLYLVPSTLGPVIAISWIRKDFLELWEGPSPNPNDKVVEVTPLCGVFNENPLSYVVSVDGFNFLIDCGWNDHFDPALLQPLSRVASTIDAVLISHPDTLHLGALPYAMKQLGLSAPVYSTEPVYRLGLLTMYDQFIARKQVSEFDLFTLDDIDSAFQAVTRLTYSQNHHLSGKGEGIVIAPHVAGHLLGGTLWKITKDGEDVIYAVDFNHRKERHLNGTILESFVRPAVLITDAYNALNNQPYRRQKDKEFGDTIQKTLRTNGNVLLPVDTAGRVLELIQILEWYWEEESLNYPIFFLTYVASSTIDYIKSFLEWMSDTIAKSFEHTRSNAFLLKHVTLLINKSELDNAPDGPKVVLASMASLEAGYSHDIFVDWAMDAKNLVLFSERGQFGTLARMLQADPPPKAVKVTVSKRVPLTGDELIAYEEEQNRKKEEALKASLLKKEQSKASHGTENDTSDPMIIDASSNVAPDVGGSHGGAYRDILIDGFVPPSTSIAPMFPFYENTSAWDDFGEVINPDDYVIKDEDMDQSAMHAGGDVDGKLDETAANLILDMKPSKVISKELTVQVKCSLRYMDFEGRSDGRSIKSILSHVAPLKLVLVHGTAEATEHLKQHCLKNVCPHVYAPQIEETIDVTSDLCAYKVQLSEKLMSNVLFKKLGDYEIAWLDAEVGKTENGTLSLLPLSKAASPHKSVLVGDLKMADFKQFLASKGIQVEFAGGALRCGEYVTLRKVTDASQKGGGSGTQQVVIEGPLCEDYYKIRELLYSQFYLLYSTSNFLFCNFKFELSARGSFMASTPPTCSPSSLQLRLALNCKNCGKFPSVLVRAGVRKLDPRLRVICHPIVHNGAKIERGNGLRRIGVCFAGSESTADGFSGWSESDSQGEALDLRRKKWFGGLVGIGITGFILFSGITFAAWSINKQNSSRQKPLMEALSTQQELLLDSDTVNDKLGEDEKEDNSLKADDETLTGETGNQEDSCSCTENEETLNKNRVGDSVDVEELAENDVESSSSNNDVNNVASLQEDFQSDSSLTVTSVAAGSLSTLISPESEFDSNVASCFKDVNNCHSGVEVLTSEPEMNILKDEPDNLPNPNTNSLNLKTDIRDERPDTSENYDFSSNKLPVYDDSSSNYNSGNQDETLGPVNEITDSSLEGFSSISGDTTKESGFFDRETVAESSEGVLSPSKTEQLLSEDTASNIEQQIERGLSEAVLVSITDYPSADDQEKNHETITNTTAAKLELQEILFSSAGVPAPLVSAAVKTLPGKVLVPAVVDQVQGQALAALQVLKVIEAEVEPSDLCTRREYARWLVSASSALSRNTTSKVYPAMYIENVTELAFDDITPQDPDFASIQGLAEAGLISSKLSRHDICSSLDEDQGPLYFSPESPLSRQDLVSWKMALEKRQLPEADRKMLHQVSGFIDTDKIHPDACPALVADLSVGEQGIVALAFGYTRLFQPDKPVTKAQAAIALATGEASDIVSEELARIEAESMAENAVAAHSALVAQVEKDINASFEKELSIEREKVAAVEKMAEEAKQELERLRSERERDSITLMRERASIESEMEVLSRLRNELEEQLQGLLSNKVEVSFEKERINKLRKEAEIENQEVSRLQYELEVERKALSMARAWAEDEAKRAREQAKALEEARDRWEKHGIRVVVDSDLREQESAGNTWLDSSKQFAVEETTDRAENLMEKLKRMATEVRGKSRDVIEKVIEKIALLVSNLRQWISKTGEQAEDLKNVAISKASRSATELQQSTTELSLALKEGAKRVVGDCREGVEKITQKFRTSYG 2181
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
5 8558627 8579265 + CcPI632755_05g009790.1 Cco05g0979 178607

Annotation

Select Seq ID Length Analysis Description Start End IPR GO
Cco05g0979 2181 Pfam Metallo-beta-lactamase superfamily domain 447 621 IPR001279 -
Cco05g0979 2181 Pfam Signal peptide peptidase 112 421 IPR007369 GO:0016020(InterPro)|GO:0042500(InterPro)
Cco05g0979 2181 Coils Coil 1976 2003 - -
Cco05g0979 2181 Pfam Cleavage and polyadenylation factor 2 C-terminal 1066 1159 IPR025069 -
Cco05g0979 2181 SMART psh_8 112 410 IPR006639 GO:0016020(InterPro)|GO:0042500(InterPro)
Cco05g0979 2181 Pfam Zn-dependent metallo-hydrolase RNA specificity domain 957 1008 IPR011108 -
Cco05g0979 2181 CDD CPSF2-like_MBL-fold 432 627 IPR035639 -
Cco05g0979 2181 FunFam Cleavage and polyadenylation specificity factor subunit 2 430 679 - -
Cco05g0979 2181 Coils Coil 1906 1940 - -
Cco05g0979 2181 MobiDBLite consensus disorder prediction 1355 1376 - -
Cco05g0979 2181 Coils Coil 2015 2042 - -
Cco05g0979 2181 Pfam Beta-Casp domain 666 789 IPR022712 -
Cco05g0979 2181 Gene3D - 433 680 IPR036866 -
Cco05g0979 2181 MobiDBLite consensus disorder prediction 832 852 - -
Cco05g0979 2181 MobiDBLite consensus disorder prediction 1339 1385 - -
Cco05g0979 2181 SMART Beta_Casp_2 666 789 IPR022712 -
Cco05g0979 2181 Coils Coil 2071 2098 - -
Cco05g0979 2181 MobiDBLite consensus disorder prediction 1503 1552 - -
Cco05g0979 2181 Coils Coil 816 836 - -
Cco05g0979 2181 MobiDBLite consensus disorder prediction 1471 1555 - -
Cco05g0979 2181 Coils Coil 1945 1972 - -
Cco05g0979 2181 PANTHER GPI-ANCHORED ADHESIN-LIKE PROTEIN 1184 2178 - -
Cco05g0979 2181 MobiDBLite consensus disorder prediction 1339 1354 - -
Cco05g0979 2181 SUPERFAMILY Metallo-hydrolase/oxidoreductase 429 1025 IPR036866 -
       

Pathway

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Cco05g0979 K14402 - - csv:101215673 1415.21
       

Dupl-types

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Cco05g0979 Cco-Chr5:8558627 Cco06g0372 Cco-Chr6:4156228 4.50E-17 dispersed
Cco05g2577 Cco-Chr5:34020107 Cco05g0979 Cco-Chr5:8558627 5.90E-47 transposed
Cco11g1453 Cco-Chr11:27318770 Cco05g0979 Cco-Chr5:8558627 9.20E-26 transposed
Cco01g0267 Cco-Chr1:2552844 Cco05g0979 Cco-Chr5:8558627 9.20E-19 wgd
       

Deco-Alignment

Select Vvi1 Blo1 Blo2 Bda1 Bda2 Bpe1 Bpe2 Bma1 Bma2 Cmo1 Cmo2 Cma1 Cma2 Car1 Car2 Sed1 Cpe1 Cpe2 Bhi1 Tan1 Cmetu1 Lac1 Hepe1 Mch1 Lcy1 Cla1 Cam1 Cec1 Cco1 Clacu1 Cmu1 Cre1 Cone1 Cone2 Cone3 Cone4 Lsi1 Csa1 Chy1 Cme1 Blo3 Blo4 Bda3 Bda4 Bpe3 Bpe4 Bma3 Bma4 Sed2 Cmo3 Cmo4 Cma3 Cma4 Car3 Car4 Cpe3 Cpe4 Bhi2 Tan2 Cmetu2 Lac2 Hepe2 Mch2 Lcy2 Cla2 Cam2 Cec2 Cco2 Clacu2 Cmu2 Cre2 Lsi2 Csa2 Chy2 Cme2
Vvi16g705 . . Bda05g00079 . Bpe03g00282 . Bma10g01228 . . Cmo18g01275 . . . . . . Cpe14g00104 Bhi01g01307 Tan01g0241 . . Hepe07g0148 . . Cla01g00256 Cam01g0262 Cec01g0254 Cco01g0267 Clacu01g0260 Cmu01g0249 Cre09g2260 Cone1ag1162 Cone5ag0872 . . . . . Cme06g01009 Blo07g00402 . . . . . . . . . . . Cma18g01252 Car16g00109 Car18g01159 Cpe09g00085 . . . . . . . . Cla05g00889 Cam05g0976 Cec05g0980 Cco05g0979 Clacu05g0963 Cmu05g0920 Cre05g1005 . Csa03g01721 Chy06g00953 .
       

Syn-Orthogroups

Select Orthogroup Bda Bhi Blo Bma Bpe Cam Car Cco Cec Chy Cla Clacu Cma Cme Cmetu Cmo Cmu Cone Cpe Cre Csa HCH Hepe Lac Lcy Lsi Mch Sed Tan Vvi Total
OG0011726 2 1 1 1 1 1 1 1 0 1 1 1 1 1 1 1 1 2 1 1 1 1 1 1 0 1 1 1 1 1 30