Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Cco05g0985 ATGGCAGGTGATCTCAATGAAGCTGTGAAGAAAGAAGAGACAAGCTTGAAGGTGAAAATCATAGGCAAAAGCCATGTCAAACCCAACAAGAAAATTGGTACAAAACACTGTCAATTGGTCACATTTGACCTCCCCTATCTTGCCTTCTACTACAACCAAAAGCTCCTCCTCTACGGCGACAACGGCGGCGAGATGAAGTTCCCCGAGACGGTAGAGAAGCTGAAGGACGGCCTCAAAACGGTTCTCGAGCCATTTCATCAGCTTGCTGGGAGGTTGGGCAAGGACGAGGATGGCATTTTTAGAGTTGAGTATGACGATGATATGGAAGGCGTCGAGGTGGCCGAAGCTATCGCCGACGATGTAGCCATAGCCGATTTGGTGGCAGAGGAAGGCACAGCCACCCTCAAGGAGCTGATTCCTTACAATGGGATCCTGAACTTGGAAGGTCTCCAGAAGCCATTGCTGGCTGTTCAGATAACGAAGCTTAAAGACGGAGTCGCGATGGGATGCGCATTCAATCACGCCGTGCTTGATGGAACCGCCACGTGGCACTTTATGAGCTCATGGGCTGAGATCTGCCGGGGGGCCCACGACGTATCCGTCCCTCCATTTCTCGAGCGTACCAAAGCGCGTAACACACGAGTGAAACTCGACATATCCCTTCCGTCCGAACCCGCCGCCGCTAATGGCGAACCAAAGGCGGCGGCGAAACCGCTAAAGGAGAAGGTCTTCAAATTTTCAGAAGCAGCCATTGACAAGATCAAATCAAAAGTGAACTCCACAAATCCACCATCGGATGGCTCAAATCCATTCTCCACTTTCCAATCACTCTCCGTCCACATATGGCGCCACGTCACCCAAGCTCGAAACCTAAAGCCGGAAGACATCACCGTCTTCACCGTCTTCGCTGACTGCCGCAAACGCGTCGATCCGCCAATGCCGGAGAGCTACTTCGGAAACCTAATCCAAGCTATATTCACCGGCACCGCCGCTGGGCTACTACTGATGAATCCGGCGGAATTCGGCGCTGGAGTGATCCAAAAGGCAATCGTCTCACACGATGCAGCAGCGATCGACCAAAGGAACAAAGAATGGGAGAGCGCGCCGAAGATCTTCGAGTTCAAGGACGCCGGAATGAACTGCGTGGCGGTGGGGAGTTCGCCGAGATTTAAAGTGTACGAGGTGGATTTCGGATGGGGAAAACCGGAGAGCGTGAGGAGTGGATGTAACAACAGATTCGACGGGATGATGTATCTGTATCAAGGGAAGAGCGGAGAGAAGAGCATTGATGTGGAGATAAGCTTGGAGGAAGAAGCTATGGCGAGGCTGGAGAAGGACAAGGAGTTTTTTATGGAGATTTAG 1362 51.98 MAGDLNEAVKKEETSLKVKIIGKSHVKPNKKIGTKHCQLVTFDLPYLAFYYNQKLLLYGDNGGEMKFPETVEKLKDGLKTVLEPFHQLAGRLGKDEDGIFRVEYDDDMEGVEVAEAIADDVAIADLVAEEGTATLKELIPYNGILNLEGLQKPLLAVQITKLKDGVAMGCAFNHAVLDGTATWHFMSSWAEICRGAHDVSVPPFLERTKARNTRVKLDISLPSEPAAANGEPKAAAKPLKEKVFKFSEAAIDKIKSKVNSTNPPSDGSNPFSTFQSLSVHIWRHVTQARNLKPEDITVFTVFADCRKRVDPPMPESYFGNLIQAIFTGTAAGLLLMNPAEFGAGVIQKAIVSHDAAAIDQRNKEWESAPKIFEFKDAGMNCVAVGSSPRFKVYEVDFGWGKPESVRSGCNNRFDGMMYLYQGKSGEKSIDVEISLEEEAMARLEKDKEFFMEI 453
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
5 8680426 8683047 - CcPI632755_05g009850.1 Cco05g0985 178613

Annotation

Select Seq ID Length Analysis Description Start End IPR GO
Cco05g0985 453 Gene3D - 222 446 IPR023213 -
Cco05g0985 453 PANTHER FAMILY REGULATORY PROTEIN, PUTATIVE (AFU_ORTHOLOGUE AFUA_3G14730)-RELATED 20 450 IPR051283 -
Cco05g0985 453 Pfam Transferase family 16 449 - -
Cco05g0985 453 FunFam Tryptamine hydroxycinnamoyl transferase 225 447 - -
Cco05g0985 453 Gene3D - 14 219 IPR023213 -
       

Pathway

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Cco05g0985 K19747 - - csv:101214239 800.045
       

Dupl-types

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Cco05g0985 Cco-Chr5:8680426 Cco11g0644 Cco-Chr11:6999114 1.20E-60 dispersed
Cco05g0985 Cco-Chr5:8680426 Cco10g2168 Cco-Chr10:34832933 7.60E-68 transposed
       

Deco-Alignment

Select Vvi1 Blo1 Blo2 Bda1 Bda2 Bpe1 Bpe2 Bma1 Bma2 Cmo1 Cmo2 Cma1 Cma2 Car1 Car2 Sed1 Cpe1 Cpe2 Bhi1 Tan1 Cmetu1 Lac1 Hepe1 Mch1 Lcy1 Cla1 Cam1 Cec1 Cco1 Clacu1 Cmu1 Cre1 Cone1 Cone2 Cone3 Cone4 Lsi1 Csa1 Chy1 Cme1 Blo3 Blo4 Bda3 Bda4 Bpe3 Bpe4 Bma3 Bma4 Sed2 Cmo3 Cmo4 Cma3 Cma4 Car3 Car4 Cpe3 Cpe4 Bhi2 Tan2 Cmetu2 Lac2 Hepe2 Mch2 Lcy2 Cla2 Cam2 Cec2 Cco2 Clacu2 Cmu2 Cre2 Lsi2 Csa2 Chy2 Cme2
Vvi16g732 . . . . . . . . Cmo16g00121 . . . . . Sed07g1011 . Cpe14g00096 Bhi01g01274 Tan01g0219 Cmetu06g1581 . Hepe07g0139 Mch10g0139 . . . . . . . . . . . . Lsi05g01210 . . Cme06g01021 . . . . . . . . . . . Cma16g00110 . . . . . . . . . . . . Cla05g00898 Cam05g0982 Cec05g0987 Cco05g0985 Clacu05g0970 Cmu05g0927 Cre05g1011 . Csa03g01733 Chy06g00964 .
       

Syn-Orthogroups

Select Orthogroup Bda Bhi Blo Bma Bpe Cam Car Cco Cec Chy Cla Clacu Cma Cme Cmetu Cmo Cmu Cone Cpe Cre Csa HCH Hepe Lac Lcy Lsi Mch Sed Tan Vvi Total
OG0008051 3 1 2 1 1 1 0 1 1 1 1 1 1 1 1 2 1 2 1 1 1 1 1 1 1 1 1 1 1 2 35