Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Cco05g0989 ATGAGACCTCCTCGAGGCCGTGGTGGTGGTGGTGGATTTAGGGGTAGAGGTGATGGAGGAAGGGGTGGTAGAGGCAGAGGTGGCGGTAGCGGTGGAGGTAGAGGCGGTGGTGGAGGCAGAGGTATGCAAAGCCGCGGTGGTGGTCGCGGAGGTGGAAGAGGTCGTGGTGGAGGAAGAGGAGGTGGTATGAAAGGTGGAAGCAAAGTTATTGTTGAACCACATAGACATGAGGGTATTTTCATAGCCAAGGGTAAAGAAGATGCTCTTGTCACGAAGAATATGGTCTCTGGAGAATCTGTCTACAACGAGAAGAGGATATCCGTACAGAATGAAGATGGAACAAAAATTGAGTACAGAGTTTGGAACCCATTCAGGTCTAAGTTGGCTGCTGCCGTTCTTGGTGGTGTTGATGACATATGGATTAAACCTGGTGCTCGAGTGTTGTATCTTGGTGCTGCTTCGGGAACAACTGTATCTCATGTCTCAGATGTTGTTGGCCCTACTGGTATAGTGTATGCTGTTGAATTCTCCCATAGAAGTGGTAGAGATCTAGTCAACATGGCAAAGAAGCGCACAAATGTTATACCCATCATTGAAGATGCTAGGCACCCGGCCAAGTACCGAATGTTAGTTGGTATGGTAGATGTGATATTTTCAGATGTTGCTCAGCCAGATCAGGCAAGAATTTTAGCACTCAATGCATCATATTTTCTCAAAGCCGGTGGCCATTTTGTTATATCTATCAAGGCCAACTGCATTGACTCGACGGTTCCTGCGGAGGCTGTGTTTGCAAGTGAAGTTAATAAGCTAAAAGCAGATCAGTTCAAACCAACCGAGCAAGTAACTCTCGAACCATTCGAGCGAGATCATGCTTGCGTTGTTGGTATCTATCGGGCACCAAAGAAACAGAAGGCTGCAGCTTAG 924 47.51 MRPPRGRGGGGGFRGRGDGGRGGRGRGGGSGGGRGGGGGRGMQSRGGGRGGGRGRGGGRGGGMKGGSKVIVEPHRHEGIFIAKGKEDALVTKNMVSGESVYNEKRISVQNEDGTKIEYRVWNPFRSKLAAAVLGGVDDIWIKPGARVLYLGAASGTTVSHVSDVVGPTGIVYAVEFSHRSGRDLVNMAKKRTNVIPIIEDARHPAKYRMLVGMVDVIFSDVAQPDQARILALNASYFLKAGGHFVISIKANCIDSTVPAEAVFASEVNKLKADQFKPTEQVTLEPFERDHACVVGIYRAPKKQKAAA 307
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
5 8722565 8725730 + CcPI632755_05g009890.1 Cco05g0989 178617

Annotation

Select Seq ID Length Analysis Description Start End IPR GO
Cco05g0989 307 ProSitePatterns Fibrillarin signature. 169 183 IPR020813 GO:0003723(InterPro)|GO:0006364(InterPro)|GO:0008168(InterPro)
Cco05g0989 307 PRINTS Fibrillarin signature 89 108 IPR000692 GO:0003723(InterPro)|GO:0006364(InterPro)|GO:0008168(InterPro)
Cco05g0989 307 PRINTS Fibrillarin signature 144 165 IPR000692 GO:0003723(InterPro)|GO:0006364(InterPro)|GO:0008168(InterPro)
Cco05g0989 307 PRINTS Fibrillarin signature 194 223 IPR000692 GO:0003723(InterPro)|GO:0006364(InterPro)|GO:0008168(InterPro)
Cco05g0989 307 PRINTS Fibrillarin signature 224 253 IPR000692 GO:0003723(InterPro)|GO:0006364(InterPro)|GO:0008168(InterPro)
Cco05g0989 307 PRINTS Fibrillarin signature 117 136 IPR000692 GO:0003723(InterPro)|GO:0006364(InterPro)|GO:0008168(InterPro)
Cco05g0989 307 PRINTS Fibrillarin signature 169 186 IPR000692 GO:0003723(InterPro)|GO:0006364(InterPro)|GO:0008168(InterPro)
Cco05g0989 307 PRINTS Fibrillarin signature 276 297 IPR000692 GO:0003723(InterPro)|GO:0006364(InterPro)|GO:0008168(InterPro)
Cco05g0989 307 MobiDBLite consensus disorder prediction 1 68 - -
Cco05g0989 307 Hamap Fibrillarin-like rRNA/tRNA 2'-O-methyltransferase [flpA]. 85 298 IPR000692 GO:0003723(InterPro)|GO:0006364(InterPro)|GO:0008168(InterPro)
Cco05g0989 307 SUPERFAMILY S-adenosyl-L-methionine-dependent methyltransferases 69 297 IPR029063 -
Cco05g0989 307 FunFam Fibrillarin like 1 66 121 - -
Cco05g0989 307 Gene3D Vaccinia Virus protein VP39 122 299 IPR029063 -
Cco05g0989 307 FunFam Fibrillarin like 1 122 299 - -
Cco05g0989 307 Pfam Fibrillarin 71 298 IPR000692 GO:0003723(InterPro)|GO:0006364(InterPro)|GO:0008168(InterPro)
Cco05g0989 307 PIRSF Nop17p 22 301 IPR000692 GO:0003723(InterPro)|GO:0006364(InterPro)|GO:0008168(InterPro)
Cco05g0989 307 Gene3D Phosphorylase Kinase; domain 1 66 121 - -
Cco05g0989 307 PANTHER RRNA 2-O-METHYLTRANSFERASE FIBRILLARIN 39 304 - GO:0000494(PANTHER)|GO:0003723(PANTHER)|GO:0005730(PANTHER)|GO:0008649(PANTHER)|GO:0031167(PANTHER)|GO:0031428(PANTHER)|GO:0032040(PANTHER)|GO:1990259(PANTHER)
Cco05g0989 307 SMART Fibrillarin_2 71 299 IPR000692 GO:0003723(InterPro)|GO:0006364(InterPro)|GO:0008168(InterPro)
       

Pathway

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Cco05g0989 K14563 - - csv:101206527 490.345
       

Dupl-types

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Cco01g0595 Cco-Chr1:5925937 Cco05g0989 Cco-Chr5:8722565 7.70E-133 dispersed
       

Deco-Alignment

Select Vvi1 Blo1 Blo2 Bda1 Bda2 Bpe1 Bpe2 Bma1 Bma2 Cmo1 Cmo2 Cma1 Cma2 Car1 Car2 Sed1 Cpe1 Cpe2 Bhi1 Tan1 Cmetu1 Lac1 Hepe1 Mch1 Lcy1 Cla1 Cam1 Cec1 Cco1 Clacu1 Cmu1 Cre1 Cone1 Cone2 Cone3 Cone4 Lsi1 Csa1 Chy1 Cme1 Blo3 Blo4 Bda3 Bda4 Bpe3 Bpe4 Bma3 Bma4 Sed2 Cmo3 Cmo4 Cma3 Cma4 Car3 Car4 Cpe3 Cpe4 Bhi2 Tan2 Cmetu2 Lac2 Hepe2 Mch2 Lcy2 Cla2 Cam2 Cec2 Cco2 Clacu2 Cmu2 Cre2 Lsi2 Csa2 Chy2 Cme2
Vvi16g735 . . Bda05g00085 . Bpe03g00144 . Bma10g01237 Bma14g02052 Cmo16g00115 Cmo18g01289 . . . . Sed07g1007 . Cpe14g00092 Bhi01g01269 Tan01g0216 Cmetu09g1022 . Hepe07g0136 Mch10g1473 . . . . . . . . . . . . Lsi05g01207 . . . Blo07g00395 Blo09g00074 . . . . . . . . . Cma16g00107 Cma18g01262 Car16g00096 Car18g01171 Cpe09g00075 . Bhi12g00810 . . . . . Lcy10g0884 Cla05g00901 Cam05g0985 Cec05g0991 Cco05g0989 Clacu05g0973 Cmu05g0930 Cre05g1015 . Csa03g01736 Chy06g00967 .
       

Syn-Orthogroups

Select Orthogroup Bda Bhi Blo Bma Bpe Cam Car Cco Cec Chy Cla Clacu Cma Cme Cmetu Cmo Cmu Cone Cpe Cre Csa HCH Hepe Lac Lcy Lsi Mch Sed Tan Vvi Total
OG0002978 1 2 2 2 2 1 2 2 2 1 1 2 1 2 2 2 1 3 1 2 2 1 2 2 2 1 3 3 1 1 52