Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Cco05g0998 ATGGCGGCTGGATCCTTGAGGAGGAGGCAGTCTAAGCGATCAAACTCCAAGCCCTCTGTAGCCATGACTTCTAGGCCTTCTTATCAACGTTTCCTTACCCCTAGAAATACCGCCCTGCTAGTTTCGATTTCTTTGATTTTCTTTCTTGTTCTGGTCTCCGGCATTTCTTTGAATGTATTGCGTAGATCGCCCAAATATGAAGTTCAATCGCCAATTGTTTACTCTATTGAGGTGGTCAACGAATTTCCTCACGATCCTACAGCCTTTATTCAGGGACTGGCTTATGTAGAAAATGACACCCTATTTGAGTCAACTGGTCTGTATGGACAGTCATCAGTTCGAAAAGTAGCTCTCTCTACTGGGAAGGCTGAGGTTTTTCACAAGATGGATGACTCTTACTTTGGGGAAGGCTTAACACTTCTTGGGGAAAGGCTGTTCCAAGTAACTTGGTTGAAGAAAACTGGTTTCATATATGACCGAGACAATTTAAGCAAAGTTAAGGAATTCACACATCAAATGACTGATGGTTGGGGATTGGCAACAGACGGAAAAGTTTTGTATGGAAGTGATGGAACATCAACATTATACCAAATTGATCCAGAGACATTTATAGTTACTAATAAATGGGTTGTGAGATATCAAGGAGATGAGGTGCATAACCTCAATGAGCTGGAATTTATCAATGGAGAAGTCTGGGCAAATGTTTGGATGACTGATTGCATCGTCAGAATCTCAATACGTGATGGAAGTGTGCTTGGATGGGTTCTCCTCCCGTCTTTGAGACGAAAATTGTTGGGAGAAGGGAAACAAATTGATGTTTTAAATGGCATTGCATGGGATAGCGGCAAGAATCGCCTTTTTGTGACAGGAAAGCTATGGCCAAAGCTCTTTGAAATCAAAGTGCAGCCATCAAAGGAGCATTATGATGATGAAAAGATAAAACAGCTTTGCTTGCGAGAGGCAAGCTTTTCAGGTGTGAGAAAGTTGTTTATAGACTTGCAACAGTTTGCATGCTTTTCAGATTTGAGTTTGCCGCTACTCAAGCTAGTTAGTTATTTGGTGACCAAAAGATTCGAACTCCGCGAAGAGATCGGAATTGTGAAGATCTTAACTTCCTTCCCTAATCCTTCTGCTTCAAAATTTCCATTGCCTTCTTCCTTCAAAGCTTCCAGACTCCATACTTCCATCTCTCTCATTCTCTTAAACACCATGACATTCAACTCATCTTCCATTCCGTTATGGCTGTCCAGCCGAACCGCATTCGGAGTGAAACGATGGGTTCTGATTGTTACTTCTGTTCTCGTTTTTCTTTTTTTCGTTGTCATTCTTGCCTTCATTTTTCACATCTATTGTCGTCGGCGGAGGCGGATTCGGAACCGTCGAAACGATAATCGTGAAGCTGTTCTTCCGGTGACGGAGATGAAGGTAAAGAAGGGTTCCGATCATCAATTTTCACGGCAGGGTAGTCTGACTACTCAGCATAGTATTGTCACAGATTGGGAGTATTCGGCCGGCCGATACTCCCCGGCGGCGTTTAAGGATCGGCGGATAAGGAGTACATTTGCGCTGGAAGAGATTGCTTTGGCGACCGATGGATTCAGCGAAGAGAATGTCATTAGCATCGAAGATTTCGGTGTCGATTACTGTGGAAAGTTGGCGGATGATACACAAGTGATTGTTAAGATATTCAATGCAGATAACAGTTTTGGAGACAACGAGCTCATCAGAGAAGCAGAGAGAATTCGGCATATTAGCCATAAAAATTTGATCAAGTTGCTTGGATACTGCACCCAGGGAATTGCTGATAATAGGATGTTTGTTTATGAAAATGTGGATAATGGGAATTTGCATCAGTGGCTTCATGGATGTCCACAGAATCCTTTTAGCCATCTGACATGGTCCATTAGGATGAACATTATTCAAGGAATTGCAAAAGGATTAGCATATCTTCATGAAGATGTGGAACCACAAATTCTTCATGGCAGGCTTAGATCCAGCTGCATATTACTTGATCAGCATTGGAATCCCAAGATTGCCAATTTCGGTCTAGTTGAGCTTTTGCCTTTGGAGTACTCGCCTGGACCTTTGGGTGGAGAAATGTATGAATCCCTTGAGAATGGATCAACTAGTCCATTCACAGAGAAGAATGATGTTTATAGCTTTGGTATACTTCTCATGGAGATGATAACAGGAAGAGCTCCTGTGGACTGCAATCAATCCCAAACAGATTTGACAGAGTGGGTGAAATCAATGATTGGGAATCAACATGCATTTGAAACAGTTGATTCCAAATTGGAAGAAAAACCATCCTCAAAGCAACTTAAACGGATGCTTTTAATTGCCCTTCGCTGTGTTGATCCAGACATTCAGCACAGGCCCACTATGGGCCAAATCCTTCTCATGCTTCAGCCTCACGACCTTTTACTCACTGATGGCTGTCAAATCGGAATGAGTGAGTTCTTGTGA 2466 42.54 MAAGSLRRRQSKRSNSKPSVAMTSRPSYQRFLTPRNTALLVSISLIFFLVLVSGISLNVLRRSPKYEVQSPIVYSIEVVNEFPHDPTAFIQGLAYVENDTLFESTGLYGQSSVRKVALSTGKAEVFHKMDDSYFGEGLTLLGERLFQVTWLKKTGFIYDRDNLSKVKEFTHQMTDGWGLATDGKVLYGSDGTSTLYQIDPETFIVTNKWVVRYQGDEVHNLNELEFINGEVWANVWMTDCIVRISIRDGSVLGWVLLPSLRRKLLGEGKQIDVLNGIAWDSGKNRLFVTGKLWPKLFEIKVQPSKEHYDDEKIKQLCLREASFSGVRKLFIDLQQFACFSDLSLPLLKLVSYLVTKRFELREEIGIVKILTSFPNPSASKFPLPSSFKASRLHTSISLILLNTMTFNSSSIPLWLSSRTAFGVKRWVLIVTSVLVFLFFVVILAFIFHIYCRRRRRIRNRRNDNREAVLPVTEMKVKKGSDHQFSRQGSLTTQHSIVTDWEYSAGRYSPAAFKDRRIRSTFALEEIALATDGFSEENVISIEDFGVDYCGKLADDTQVIVKIFNADNSFGDNELIREAERIRHISHKNLIKLLGYCTQGIADNRMFVYENVDNGNLHQWLHGCPQNPFSHLTWSIRMNIIQGIAKGLAYLHEDVEPQILHGRLRSSCILLDQHWNPKIANFGLVELLPLEYSPGPLGGEMYESLENGSTSPFTEKNDVYSFGILLMEMITGRAPVDCNQSQTDLTEWVKSMIGNQHAFETVDSKLEEKPSSKQLKRMLLIALRCVDPDIQHRPTMGQILLMLQPHDLLLTDGCQIGMSEFL 821
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
5 8815113 8825364 - CcPI632755_05g009980.1 Cco05g0998 178626

Annotation

Select Seq ID Length Analysis Description Start End IPR GO
Cco05g0998 821 Gene3D Phosphorylase Kinase; domain 1 501 609 - -
Cco05g0998 821 Pfam Protein tyrosine and serine/threonine kinase 550 799 IPR001245 GO:0004672(InterPro)|GO:0006468(InterPro)
Cco05g0998 821 SUPERFAMILY Protein kinase-like (PK-like) 518 802 IPR011009 -
Cco05g0998 821 PANTHER OS01G0323000 PROTEIN 414 810 IPR052232 -
Cco05g0998 821 Pfam Glutamine cyclotransferase 65 301 IPR007788 GO:0016603(InterPro)|GO:0017186(InterPro)
Cco05g0998 821 SUPERFAMILY YVTN repeat-like/Quinoprotein amine dehydrogenase 75 299 IPR011044 -
Cco05g0998 821 MobiDBLite consensus disorder prediction 1 22 - -
Cco05g0998 821 ProSiteProfiles Protein kinase domain profile. 533 808 IPR000719 GO:0004672(InterPro)|GO:0005524(InterPro)|GO:0006468(InterPro)
Cco05g0998 821 Gene3D Transferase(Phosphotransferase) domain 1 611 808 - -
Cco05g0998 821 FunFam Putative receptor-like serine/threonine-protein kinase 611 814 - -
       

Pathway

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Cco05g0998 K22757 - - csv:101210355 652.899
       

Dupl-types

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Cco05g0998 Cco-Chr5:8815113 Cco08g1791 Cco-Chr8:29047106 1.70E-73 dispersed
Cco05g0170 Cco-Chr5:1351734 Cco05g0998 Cco-Chr5:8815113 7.60E-73 wgd
       

Deco-Alignment

Select Vvi1 Blo1 Blo2 Bda1 Bda2 Bpe1 Bpe2 Bma1 Bma2 Cmo1 Cmo2 Cma1 Cma2 Car1 Car2 Sed1 Cpe1 Cpe2 Bhi1 Tan1 Cmetu1 Lac1 Hepe1 Mch1 Lcy1 Cla1 Cam1 Cec1 Cco1 Clacu1 Cmu1 Cre1 Cone1 Cone2 Cone3 Cone4 Lsi1 Csa1 Chy1 Cme1 Blo3 Blo4 Bda3 Bda4 Bpe3 Bpe4 Bma3 Bma4 Sed2 Cmo3 Cmo4 Cma3 Cma4 Car3 Car4 Cpe3 Cpe4 Bhi2 Tan2 Cmetu2 Lac2 Hepe2 Mch2 Lcy2 Cla2 Cam2 Cec2 Cco2 Clacu2 Cmu2 Cre2 Lsi2 Csa2 Chy2 Cme2
Vvi16g761 . . . . Bpe03g00154 . Bma10g01253 Bma14g02043 Cmo16g00106 Cmo18g01300 . . . . . . Cpe14g00084 . . . . . . . . . . . . . . . Cone5ag0891 Cone14ag0056 . Lsi05g01194 . . Cme06g01030 . Blo09g00064 . . . . . . . . . Cma16g00099 . Car16g00089 Car18g01180 Cpe09g00067 . . . . . . . . Cla05g00914 Cam05g1000 Cec05g1003 Cco05g0998 Clacu05g0988 Cmu05g0944 Cre05g1025 . Csa03g01747 Chy06g00976 .
       

Syn-Orthogroups

Select Orthogroup Bda Bhi Blo Bma Bpe Cam Car Cco Cec Chy Cla Clacu Cma Cme Cmetu Cmo Cmu Cone Cpe Cre Csa HCH Hepe Lac Lcy Lsi Mch Sed Tan Vvi Total
OG0005643 1 0 1 3 1 1 2 1 1 1 1 1 2 1 1 2 1 2 2 0 1 2 1 1 1 1 1 2 2 1 38
       

Regulatory proteins

Select Gene Hmm_acc Hmm_name Score E-value Regulatory Factors Family
86841 PF07714 PK_Tyr_Ser-Thr 6.40E-30 CL0016 Cco PK