Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Cco05g1007 ATGGAGGAAGAGATGAAGAATTCTTATTGGAAGAAACCATCAAAATGGTGTATCGGTCAGGTGGCCCTCTCAGTTTCTGTTCTATTTGATCACTTCATTGTGTTCTTAGCCAGTTCTATTAGTAGCTACAATTCTCATGCCTGTTTACCTCAAATCTCTTTTGTTTCAGGCCATTTGAAGCAAAAGTTTTCAACTCCCAAGAGCTTTGTATTAACAAATAAAGAGATGGCTGCAAATGATGTTCCATGCTGTGAGCCAAGGTTCTGGATGTATCTTTTGATATGTGTAGGTTTGGTTGCTTTTGCTGGTCTTATGTCGGGCCTTACGCTAGGACTTATGTCCCTCAGCTTGGTTGATCTCGAGGTTCTTGCAAAATCTGGCAGGCCTGACGACCGCAAAAATGCCGCTAAAATTCTGCCCATAGTAAAGAACCAGCATTTGCTTCTATGCACACTCCTCATAAGCAATGCTATGGCAATGGAGGCTCTGCCTATCTTCATTGATGCACTTCTCCCAGCTTGGGGTGCAATTGTGATATCAGTGACTCTCATACTAACTTTTGGAGAGATTATTCCTCAAGCTATATGTTCAAGGTATGGACTGAGTGTTGGCGCAAAGCTATCCGTCGTTGTTCGGGTGCTTCTCTTAGTCCTCTTTCCTTTGTCTTACCCCATCAGTAAGTTATTAGATTTGCTTCTAGGCAAGGAGCATTCTGCACTCCTAAGAAGGGCAGAGCTCAAGACATTTGTGGATATGCATGGGAACAAGGCAGGCAAAGGTGGAGAATTGACTCAAGAAGAAACTACCATAATCACTGGAGCTTTGGACATGACACTCAAAACTGCCAAAGATGCTATGACTCCTTTATCCAAATTGTTTTCACTTGATATAAATTCCAAACTTGATGAGAAAACCATGGAGCTGATTTTAAGAAAAGGACATAGTCGAGTGCCGATATACTCGGGACATCCAACTAATATCATTGGTATTATTTTGGTTAAAAATCTGATCAAATTTCATCCACAGGATGAAACTCCCATCAGAAATCTCACCATCAGAAAAGTTCCAAGGGTACATGAGAACTTACCTTTGTATGACATTTTGAACCAGTTCCAGCAAGGACATAGTCATATGGCTGTTGTCATAAAGAATCATAAGGAAGCCAGAGAGCCTGCAGATTCAACAACTGCAGATTCTAACAAATCAGAACTGGAAACCGCGACACCGGTAACTGAGACGGAGTTAGGACATATTAAGCTGCAGATAAGGAATATTTACTCTAATGGTAGTAGCGATACTGATGGAAAATCAATGCCAGATTTTGATGAAGATGTTATTGGTATCATAACACTAGAGGATGTCATGGAAGAACTTTTACAGGAAGAGATATTGGATGAGACTGATGAATATGTTGCTGTTCACCACAAGCTGAAAGTGAATATGAAAGTAAGGAGATCAACATCAGAATCACCAGGAGCAGCCCATCTACAGTGGATATCACCAGTGGCATCCCCACTATCTTCATACCATCATTCTCCACTTTCTTCTTCATACAATCACTCACCAATTCTTCATTCTCCAATTCCTCCAAATATTCACTGCCCATTTACACCACTACCTCTCTCTTCTTCGCCTGCAAATTACTTGCACTCTTCTCCAACTCCATGTTCTGTTCCTTCTCTTTGTGCTTCACCTTCTTCTCATAAGATTTCAAGGAAATCATATGAGAAGCTGAAGCAGCCAGATGGATCATAG 1755 41.08 MEEEMKNSYWKKPSKWCIGQVALSVSVLFDHFIVFLASSISSYNSHACLPQISFVSGHLKQKFSTPKSFVLTNKEMAANDVPCCEPRFWMYLLICVGLVAFAGLMSGLTLGLMSLSLVDLEVLAKSGRPDDRKNAAKILPIVKNQHLLLCTLLISNAMAMEALPIFIDALLPAWGAIVISVTLILTFGEIIPQAICSRYGLSVGAKLSVVVRVLLLVLFPLSYPISKLLDLLLGKEHSALLRRAELKTFVDMHGNKAGKGGELTQEETTIITGALDMTLKTAKDAMTPLSKLFSLDINSKLDEKTMELILRKGHSRVPIYSGHPTNIIGIILVKNLIKFHPQDETPIRNLTIRKVPRVHENLPLYDILNQFQQGHSHMAVVIKNHKEAREPADSTTADSNKSELETATPVTETELGHIKLQIRNIYSNGSSDTDGKSMPDFDEDVIGIITLEDVMEELLQEEILDETDEYVAVHHKLKVNMKVRRSTSESPGAAHLQWISPVASPLSSYHHSPLSSSYNHSPILHSPIPPNIHCPFTPLPLSSSPANYLHSSPTPCSVPSLCASPSSHKISRKSYEKLKQPDGS 584
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
5 8854223 8863163 - CcPI632755_05g010070.1 Cco05g1007 178635

Annotation

Select Seq ID Length Analysis Description Start End IPR GO
Cco05g1007 584 MobiDBLite consensus disorder prediction 561 584 - -
Cco05g1007 584 Pfam Cyclin M transmembrane N-terminal domain 93 264 IPR002550 -
Cco05g1007 584 MobiDBLite consensus disorder prediction 570 584 - -
Cco05g1007 584 ProSiteProfiles CBS domain profile. 286 347 IPR000644 -
Cco05g1007 584 Gene3D - 267 399 IPR046342 -
Cco05g1007 584 PANTHER METAL TRANSPORTER CNNM 80 494 IPR045095 GO:0005737(PANTHER)|GO:0010960(InterPro)|GO:0030026(PANTHER)
Cco05g1007 584 SUPERFAMILY CBS-domain pair 271 460 IPR046342 -
Cco05g1007 584 CDD CBS_pair_CorC_HlyC_assoc 281 382 IPR044751 -
Cco05g1007 584 Gene3D - 417 466 IPR046342 -
Cco05g1007 584 ProSiteProfiles CNNM transmembrane domain profile. 84 267 IPR002550 -
Cco05g1007 584 MobiDBLite consensus disorder prediction 387 409 - -
Cco05g1007 584 FunFam DUF21 domain-containing protein 265 401 - -
       

Pathway

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Cco05g1007 K16302 - - csv:101210102 838.18
       

Dupl-types

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Cco04g1544 Cco-Chr4:30796092 Cco05g1007 Cco-Chr5:8854223 4.00E-115 dispersed
Cco05g1007 Cco-Chr5:8854223 Cco05g2152 Cco-Chr5:30398750 2.50E-132 dispersed
       

Deco-Alignment

Select Vvi1 Blo1 Blo2 Bda1 Bda2 Bpe1 Bpe2 Bma1 Bma2 Cmo1 Cmo2 Cma1 Cma2 Car1 Car2 Sed1 Cpe1 Cpe2 Bhi1 Tan1 Cmetu1 Lac1 Hepe1 Mch1 Lcy1 Cla1 Cam1 Cec1 Cco1 Clacu1 Cmu1 Cre1 Cone1 Cone2 Cone3 Cone4 Lsi1 Csa1 Chy1 Cme1 Blo3 Blo4 Bda3 Bda4 Bpe3 Bpe4 Bma3 Bma4 Sed2 Cmo3 Cmo4 Cma3 Cma4 Car3 Car4 Cpe3 Cpe4 Bhi2 Tan2 Cmetu2 Lac2 Hepe2 Mch2 Lcy2 Cla2 Cam2 Cec2 Cco2 Clacu2 Cmu2 Cre2 Lsi2 Csa2 Chy2 Cme2
Vvi16g773 . . . . Bpe03g00157 . . . Cmo16g00103 . . . . . Sed13g0543 . Cpe14g00080 Bhi01g01589 Tan01g0786 . . . Mch10g0553 . . . . . . . . Cone1ag1195 . . Cone15ag0060 Lsi05g01188 . . . . Blo09g00058 . . . . . . . . . Cma16g00096 . Car16g00086 . . . . . . . . . . Cla05g00919 Cam05g1007 Cec05g1011 Cco05g1007 Clacu05g0995 Cmu05g0950 Cre05g1031 . Csa03g01752 Chy06g00981 .
       

Syn-Orthogroups

Select Orthogroup Bda Bhi Blo Bma Bpe Cam Car Cco Cec Chy Cla Clacu Cma Cme Cmetu Cmo Cmu Cone Cpe Cre Csa HCH Hepe Lac Lcy Lsi Mch Sed Tan Vvi Total
OG0007021 1 9 1 0 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 37