Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Cco05g1016 ATGCTACAGTCAGCTCGTGAACTTTCATCTTCCATTTACTTCCCTCACTGCCATGCAAATTCCAAAGCCATTCCCATATTATTAATAAAAGAAGAACATGCAATATTTGAGAGCCACAAGTTTTCGTTCACTTTCTCAGAAAGATCTGTCCCAATGGAAAAAGACCAACCACCGCCACAGCCGCCTCCGCCGCCGCCCAGAAGCTACACATTAACAGCATCATCAATCTTCTACGCCAAATCCACCGCCGCAGCCGCCTCCATCTCGCCGTACAACTGGTTCAAATCCTGCACCACCGCGGAACCCACCTACATTCTCCGAGACATTTCCTTCACAGCCCACCCTTCTCAAATCCTCGCCATCGTCGGCCCAAGCGGCGCCGGAAAATCAACTCTCCTCGACATTCTCGCCGCCCGAACCTCGCCGACGCACGGCGCTCTCCTCCTCAACTCCGCCCCTCTTAACCCTTCCACTTTTCGGAAACTCTCCGCCTACGTCCCTCAACACGACGCCTCTCTCCCTCTCTTAACCGTCTCCGAAACCTTCGCCTTCGCCGCCCGTCTCCTCCTCCCAAAAAAATCCCAAATTCCGGCCACCGTCAACTCCCTCCTAGCCGAACTCCGCCTCACACACGTCGCCAACACTCGCCTCATCTCCGGCCTCTCCGGCGGCGAACGGCGGCGAGTGTCAATCGGCCTCAGCCTCCTCCACGACCCGGCCGTTCTACTACTTGACGAACCCACCTCCGGCCTCGACAGTGGATCGGCGTTTAACGTGATCTCGACCCTTAAATCCATCTGCGGGTCGCGCAACCGGACGGTGGTGGTTTCGATTCACCAGCCGAGTTATCGGATATTGTCAGCCATTGATGGGATTCTTTTGCTATGTAAAGGATGTGTGATTCATCATGGGACTGTTTCGAGCTTGGAGAGTTATTTAATTGCGAAGGAATTTTGTATTCCGCCGCAGCTTAATCCTCTGGAATTTGCCATGGAAATTCTCAATAACCTTACGCCTTCTTCTAATTCTAGTTCAGATTATTCTGATTCCTCGGGCGTAATTAATCCTAATCAAGCTGTTAATTATCCCAATTACGAAGATAATAATGAGATCAAATACAGAAGCTCCAGATTGCATGAAATCTTGACCCTTCATTGGCGATTTTGGATTATCATTTTTCGAACGAGGCAGCTGCTTTTGACTAATACTTTGGAAGCTCTCATTGTTGGAATTGTCCTAGGAACAATTTACATAAACATCGGAACGGACAAAGCCGGCATAGAGAAAAGATTCGGTCTATTCGCCTTCACACTAACATTCCTCCTCTCTTCCACAACCGAAACTCTCCCCATTTTCCTCAATGAACGCCCCATTCTCCTCCGTGAAACCTCCGCCGGCGTCTACCGTCTTTCCTCTTACATAATCGCCAACACCCTGGTTTTCCTCCCTTACCTCCTCGCCGTCGCCGTCATCTACTCCGCCTCCGTCTACTTCCTCGTCGGCCTCTGCGCCACGTGGCAAGCTTTCGCGTACTTCGTCCTCGTCATTTGGGTCATCATTCTGATGGCCAATTCCTTCGTCCTTTTCTTAAGCTCTCTGGCCCCCAATTTCATCGCCGGCACCTCGCTGGTAACCGTTATCCTGGCCGCGTTTTTCCTTTTCTCCGGCTACTTCATCTCCCAAGAAAGCATGCCTAAGTTTTGGGTGTTTATGACCTTCATGTCAATGTACAAGTATGCCCTTGACGCATTGGTTATCAACGAATTTTCGTGTTTGGTTTCTAGATGCTTCATTTGGTTTGAGGAAAATGAAAGGCAGTGTTTGGTTACGGGTGGAGATGTGTTGGTTAAGAGAGGCCTTCATCAGAATCAACGGTGGAGAAACGTTTATGCTTTGGTCGCGTTTTTTGTGTTATATCGACTTCTTTGTTTGCTTGTTTTGATTAGAAGGGTTTCTACATCTAAGAAATAA 1971 49.32 MLQSARELSSSIYFPHCHANSKAIPILLIKEEHAIFESHKFSFTFSERSVPMEKDQPPPQPPPPPPRSYTLTASSIFYAKSTAAAASISPYNWFKSCTTAEPTYILRDISFTAHPSQILAIVGPSGAGKSTLLDILAARTSPTHGALLLNSAPLNPSTFRKLSAYVPQHDASLPLLTVSETFAFAARLLLPKKSQIPATVNSLLAELRLTHVANTRLISGLSGGERRRVSIGLSLLHDPAVLLLDEPTSGLDSGSAFNVISTLKSICGSRNRTVVVSIHQPSYRILSAIDGILLLCKGCVIHHGTVSSLESYLIAKEFCIPPQLNPLEFAMEILNNLTPSSNSSSDYSDSSGVINPNQAVNYPNYEDNNEIKYRSSRLHEILTLHWRFWIIIFRTRQLLLTNTLEALIVGIVLGTIYINIGTDKAGIEKRFGLFAFTLTFLLSSTTETLPIFLNERPILLRETSAGVYRLSSYIIANTLVFLPYLLAVAVIYSASVYFLVGLCATWQAFAYFVLVIWVIILMANSFVLFLSSLAPNFIAGTSLVTVILAAFFLFSGYFISQESMPKFWVFMTFMSMYKYALDALVINEFSCLVSRCFIWFEENERQCLVTGGDVLVKRGLHQNQRWRNVYALVAFFVLYRLLCLLVLIRRVSTSKK 656
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
5 8921146 8927143 - CcPI632755_05g010160.1 Cco05g1016 178644

Annotation

Select Seq ID Length Analysis Description Start End IPR GO
Cco05g1016 656 ProSitePatterns ABC transporters family signature. 221 235 IPR017871 GO:0005524(InterPro)|GO:0016887(InterPro)
Cco05g1016 656 ProSiteProfiles ATP-binding cassette, ABC transporter-type domain profile. 88 322 IPR003439 GO:0005524(InterPro)|GO:0016887(InterPro)
Cco05g1016 656 PANTHER ABC TRANSPORTER G FAMILY MEMBER 28 69 644 IPR050352 GO:0016020(PANTHER)|GO:0042626(PANTHER)|GO:0055085(PANTHER)
Cco05g1016 656 SMART AAA_5 115 307 IPR003593 GO:0016887(InterPro)
Cco05g1016 656 FunFam ATP-binding cassette transporter 95 315 - -
Cco05g1016 656 Pfam ABC transporter 106 249 IPR003439 GO:0005524(InterPro)|GO:0016887(InterPro)
Cco05g1016 656 Gene3D - 89 317 IPR027417 -
Cco05g1016 656 Pfam ABC-2 type transporter 279 344 IPR043926 GO:0140359(InterPro)
Cco05g1016 656 Pfam ABC-2 type transporter 380 589 IPR013525 GO:0016020(InterPro)|GO:0140359(InterPro)
Cco05g1016 656 SUPERFAMILY P-loop containing nucleoside triphosphate hydrolases 101 311 IPR027417 -
       

Pathway

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Cco05g1016 K05681 - - csv:101208704 974.541
       

Dupl-types

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Cco02g2441 Cco-Chr2:36780229 Cco05g1016 Cco-Chr5:8921146 2.60E-138 dispersed
Cco05g1016 Cco-Chr5:8921146 Cco09g1147 Cco-Chr9:10974003 1.60E-122 dispersed
Cco05g1016 Cco-Chr5:8921146 Cco10g2068 Cco-Chr10:34033419 8.10E-79 transposed
       

Deco-Alignment

Select Vvi1 Blo1 Blo2 Bda1 Bda2 Bpe1 Bpe2 Bma1 Bma2 Cmo1 Cmo2 Cma1 Cma2 Car1 Car2 Sed1 Cpe1 Cpe2 Bhi1 Tan1 Cmetu1 Lac1 Hepe1 Mch1 Lcy1 Cla1 Cam1 Cec1 Cco1 Clacu1 Cmu1 Cre1 Cone1 Cone2 Cone3 Cone4 Lsi1 Csa1 Chy1 Cme1 Blo3 Blo4 Bda3 Bda4 Bpe3 Bpe4 Bma3 Bma4 Sed2 Cmo3 Cmo4 Cma3 Cma4 Car3 Car4 Cpe3 Cpe4 Bhi2 Tan2 Cmetu2 Lac2 Hepe2 Mch2 Lcy2 Cla2 Cam2 Cec2 Cco2 Clacu2 Cmu2 Cre2 Lsi2 Csa2 Chy2 Cme2
Vvi16g798 . . Bda05g00099 . Bpe03g00256 . . . Cmo16g00094 Cmo18g01312 . . . . . . Cpe14g00074 Bhi01g01422 . . . Hepe07g0110 Mch10g0112 . . . . . . . . . . Cone14ag0047 Cone15ag0051 Lsi05g01179 . . . Blo07g00359 . . . . . . . . . . Cma16g00090 Cma18g01281 Car16g00080 . Cpe09g00057 . . . . . . . . Cla05g00929 Cam05g1016 Cec05g1020 Cco05g1016 Clacu05g1005 Cmu05g0958 Cre05g1039 . Csa03g01761 Chy06g00989 .
       

Syn-Orthogroups

Select Orthogroup Bda Bhi Blo Bma Bpe Cam Car Cco Cec Chy Cla Clacu Cma Cme Cmetu Cmo Cmu Cone Cpe Cre Csa HCH Hepe Lac Lcy Lsi Mch Sed Tan Vvi Total
OG0010883 1 1 1 0 1 1 1 1 1 1 1 1 1 1 1 1 1 2 2 1 1 1 1 1 1 1 1 1 1 1 31