Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Cco05g1022 ATGTCACAGGTGGTGGCTACCAGGGCGATTCACAGCACATTCCTGTGCCCTAGCTCGGGATCTGTGCAAGAACGACTTGACAGGGCTCGGTCTTTTGGTATTGGCTCCAAAGTGTTGGCGCATGAGAAGAAGAGTTGGAATTTTGTTTCCAAGAGAAGTCTAATCACATCCAAGAGAGCTGCTCAAGCTGAAGTTGTTCCGGTATCACCTGAGGATGTTCAGAAGGCAGATGAGCAATTTGAACATTTACGAGCAGTTCAACAGCTTGGGGATACACCGGTTGGTATGTGGTCGAAGCCAACAGTTAGACGTAAGACAAAGATCGTGTGCACGATTGGACCTTCGACTAATACGAAGGAAATGATTTGGAAACTGGCTGAGGCTGGAATGAATGTTGCTCGATTGAATATGTCTCATGGAGACCATGCATCTCATCAGAAAGTTATAGATTTAGTCAGAGAATACAATGCCCAATCACAAGACAACTGCATCGCAATCATGCTCGACACCAAGGGTCCTGAGGTTAGGAGTGGTGACCTACCACAACCAATATTGTTAGAAACTGGACAGGAATTCACTTTTACCATACGGAGAGGTGTTAGCACTGCAGATTCTGTCAGTGTGAACTACGATGATTTTGTTAATGATGTTGAAGTTGGGGACATGCTTCTTGTTGATGGTGGAATGATGTCGTTGATGGTGAAGTCTAAGACAGAAGATTCGGTCAAGTGTGAAGTTATTGATGGAGGAGAGCTCAAGTCCAGACGACATTTAAATGTTCGAGGGAAAAGTGCTACACTGCCTTCAATTACTGAGAAGGATTGGGATGATATTAAATTTGGAGTTGATAACAAAGTTGATTTTTATGCCGTCTCTTTCGTCAAAGATGCACAAGTAGTTCATGAGTTGAAGAAATATCTTAAGAGCTGTGATGCTGATATTCATGTGATTGTAAAAATAGAAAGTGCAGACTCCATACCAAATTTGCATTCAATTATTACAGCTTCTGATGGGGAGGAGATAATCAACCTGTGTCGAGGCATGGGGAAGGCTGTCATTGTGGCTACTAACATGCTTGAGAGTATGATTGTTCATCCGACACCAACCAGGGCAGAAGTATCTGACATTGCTATTGCAGTTAGAGAGGGTGCTGATGCAATCATGCTGTCTGGAGAAACTGCTCATGGAAAATTCCCATTAAAAGCTGTGAAAGTAATGCATACAGTTGCTTTGCGAACTGAAGCAACTATAGAAGGTGGTCGAATGCCATTGAATCTCGGTCAAACATTCAAGAACCATATGAGCGAGATGTTTGCTTATCATGCAACAATGATGTCCAACACTCTTGGAACCTCAATAGTTGTCTTCACTAGAACTGGTTTCATGGCTATCCTCCTTAGCCATTATCGACCATCTGGCACAACATTTGCCTTTACAAATGATAAAAGGATACAACAGAGGTTGGCTTTGTATCAAGGAGTGTGCCCTATATACATGCAATTTTCTGATGATGCGGAGCAGACCTTTACCGATGCCTTATCTATGCTGCAGAGACAAGGAATGGTGAAGGAAGGAGAAGAGGTAGCGCTCCTTCAGAGTGGCAGACAACCGATATGGCGGTTCCCATCTACTCACAACATTCAAAATCTAGTTGATCTCTAG 1662 43.2 MSQVVATRAIHSTFLCPSSGSVQERLDRARSFGIGSKVLAHEKKSWNFVSKRSLITSKRAAQAEVVPVSPEDVQKADEQFEHLRAVQQLGDTPVGMWSKPTVRRKTKIVCTIGPSTNTKEMIWKLAEAGMNVARLNMSHGDHASHQKVIDLVREYNAQSQDNCIAIMLDTKGPEVRSGDLPQPILLETGQEFTFTIRRGVSTADSVSVNYDDFVNDVEVGDMLLVDGGMMSLMVKSKTEDSVKCEVIDGGELKSRRHLNVRGKSATLPSITEKDWDDIKFGVDNKVDFYAVSFVKDAQVVHELKKYLKSCDADIHVIVKIESADSIPNLHSIITASDGEEIINLCRGMGKAVIVATNMLESMIVHPTPTRAEVSDIAIAVREGADAIMLSGETAHGKFPLKAVKVMHTVALRTEATIEGGRMPLNLGQTFKNHMSEMFAYHATMMSNTLGTSIVVFTRTGFMAILLSHYRPSGTTFAFTNDKRIQQRLALYQGVCPIYMQFSDDAEQTFTDALSMLQRQGMVKEGEEVALLQSGRQPIWRFPSTHNIQNLVDL 553
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
5 8985770 8991169 + CcPI632755_05g010220.1 Cco05g1022 178650

Annotation

Select Seq ID Length Analysis Description Start End IPR GO
Cco05g1022 553 PRINTS Pyruvate kinase family signature 372 390 IPR001697 GO:0000287(InterPro)|GO:0004743(InterPro)|GO:0006096(InterPro)|GO:0030955(InterPro)
Cco05g1022 553 PRINTS Pyruvate kinase family signature 347 371 IPR001697 GO:0000287(InterPro)|GO:0004743(InterPro)|GO:0006096(InterPro)|GO:0030955(InterPro)
Cco05g1022 553 PRINTS Pyruvate kinase family signature 162 178 IPR001697 GO:0000287(InterPro)|GO:0004743(InterPro)|GO:0006096(InterPro)|GO:0030955(InterPro)
Cco05g1022 553 PRINTS Pyruvate kinase family signature 391 407 IPR001697 GO:0000287(InterPro)|GO:0004743(InterPro)|GO:0006096(InterPro)|GO:0030955(InterPro)
Cco05g1022 553 PANTHER PYRUVATE KINASE 84 338 IPR001697 GO:0000287(InterPro)|GO:0004743(PANTHER)|GO:0004743(InterPro)|GO:0005737(PANTHER)|GO:0006096(PANTHER)|GO:0006096(InterPro)|GO:0009570(PANTHER)|GO:0030955(InterPro)
Cco05g1022 553 Pfam Pyruvate kinase, alpha/beta domain 439 532 IPR015795 -
Cco05g1022 553 Gene3D - 425 545 IPR036918 -
Cco05g1022 553 Gene3D - 173 268 IPR015806 GO:0004743(InterPro)|GO:0006096(InterPro)
Cco05g1022 553 ProSitePatterns Pyruvate kinase active site signature. 314 326 IPR018209 GO:0004743(InterPro)|GO:0006096(InterPro)
Cco05g1022 553 Gene3D - 339 411 IPR040442 -
Cco05g1022 553 FunFam Pyruvate kinase 174 267 - -
Cco05g1022 553 FunFam Pyruvate kinase 414 533 - -
Cco05g1022 553 SUPERFAMILY PK C-terminal domain-like 401 535 IPR036918 -
Cco05g1022 553 FunFam Pyruvate kinase 269 336 - -
Cco05g1022 553 SUPERFAMILY Phosphoenolpyruvate/pyruvate domain 95 417 IPR015813 GO:0003824(InterPro)
Cco05g1022 553 Gene3D - 104 338 IPR040442 -
Cco05g1022 553 Pfam Pyruvate kinase, barrel domain 341 403 IPR015793 GO:0000287(InterPro)|GO:0004743(InterPro)|GO:0006096(InterPro)|GO:0030955(InterPro)
Cco05g1022 553 Pfam Pyruvate kinase, barrel domain 104 338 IPR015793 GO:0000287(InterPro)|GO:0004743(InterPro)|GO:0006096(InterPro)|GO:0030955(InterPro)
Cco05g1022 553 SUPERFAMILY PK beta-barrel domain-like 173 264 IPR011037 -
       

Pathway

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Cco05g1022 K00873 - - csv:101206887 1037.71
       

Dupl-types

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Cco05g1022 Cco-Chr5:8985770 Cco09g1269 Cco-Chr9:13706709 3.40E-195 dispersed
Cco05g1022 Cco-Chr5:8985770 Cco06g0667 Cco-Chr6:7353653 2.00E-86 transposed
       

Deco-Alignment

Select Vvi1 Blo1 Blo2 Bda1 Bda2 Bpe1 Bpe2 Bma1 Bma2 Cmo1 Cmo2 Cma1 Cma2 Car1 Car2 Sed1 Cpe1 Cpe2 Bhi1 Tan1 Cmetu1 Lac1 Hepe1 Mch1 Lcy1 Cla1 Cam1 Cec1 Cco1 Clacu1 Cmu1 Cre1 Cone1 Cone2 Cone3 Cone4 Lsi1 Csa1 Chy1 Cme1 Blo3 Blo4 Bda3 Bda4 Bpe3 Bpe4 Bma3 Bma4 Sed2 Cmo3 Cmo4 Cma3 Cma4 Car3 Car4 Cpe3 Cpe4 Bhi2 Tan2 Cmetu2 Lac2 Hepe2 Mch2 Lcy2 Cla2 Cam2 Cec2 Cco2 Clacu2 Cmu2 Cre2 Lsi2 Csa2 Chy2 Cme2
Vvi16g836 . . . Bda07g01913 Bpe03g00165 . . . Cmo16g00089 Cmo18g01319 . . Car02g00961 . Sed05g0275 . Cpe14g00069 Bhi01g01431 Tan01g0170 Cmetu04g2585 . Hepe07g0104 Mch10g0106 . . . . . . . . Cone1ag0946 Cone5ag0665 . . Lsi05g01173 . . Cme06g01059 . Blo09g00048 . . . . . . . . . Cma16g00086 Cma18g01290 Car16g00075 Car18g01207 Cpe09g00052 . . . . . . . . Cla05g00935 Cam05g1022 Cec05g1026 Cco05g1022 Clacu05g1011 Cmu05g0964 Cre05g1045 . Csa03g02178 Chy06g01277 .
       

Syn-Orthogroups

Select Orthogroup Bda Bhi Blo Bma Bpe Cam Car Cco Cec Chy Cla Clacu Cma Cme Cmetu Cmo Cmu Cone Cpe Cre Csa HCH Hepe Lac Lcy Lsi Mch Sed Tan Vvi Total
OG0001502 3 1 2 2 2 2 4 2 2 2 2 2 3 3 2 4 2 4 4 2 2 2 2 2 2 2 2 3 3 2 72