Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Cco05g1027 ATGATGAAGAATAGCTTCATTTTCCTTGAAATATTATTGTTTTTAGCATTCATCTGGCCGGGGGTTTTCACTGAGCCAGTTGAAGACAAGCAAGCCTTGCTTGATTTCTTCCATAATATCCCCCACTCGCCCTCTCTCAACTGGAATGAGAGTAGTTCTGTGTGCAAATCCTGGACAGGAGTGTTTTGCAATTCTGATGAGTCCAGAGTAGTAGCCTTACGATTACCCGGGACTGGTCTCCGTGGCCCGATCCCTGCGAATACTCTTAGCCGCCTAACTGCGCTTGAGATTCTAAGCCTTAGGTTGAATAGGATATCAGGTCCTTTCCCTTTTGATTTTTCAAAGCTGGAAAGTTTGAATTCCTTGTATCTGCAATACAACAAGTTTTCTGGTCCTTTGCCTTTAGATTTTTCAGTTTGGAATAACCTCAGTGTCATTGATCTATCGAACAATCTCTTTAATGGGAGTATTCCTTCCTCTATCTCAAAGTTGAGTCATTTGACAGTTTTGAATCTTGCAAACAACTCATTTTCAGGCGAAATTCCGAACCTTGATATTCCAAGTTTGCAACGGTTAGATTTGTCCAATAATAATCTTACAGGAAATGTGCCTCACTCTCTTCAAAGATTTCCAAGTTGGGTGTTCTCCGGTAACAATGTTACTCAAGAACATAGTGCAATTCCCCCATCTTTTCCTCTCCAGCCTCCCACTGCTCAACCGACAGGAAAAGGCAAAGGACTGAGTCAATCTGCAATACTTGGTATTGCAATTGGTAGTTCTGTTATTGGGTTTATTTTGCTAGCTGTTTTGTTGACTGCTTGCTGGTTGAAAAAACGAAAGGAAAATATGAGTTCCCCCATGGAGCCCAAAAAGAAGGAAGCGTCTGTGAAGAAAAGGGGCTTTGAGAGCCAAGAACAAAAGAACAACCTCAATTTCTTTCAGGATTCTAATCTTGCATTTGACTTGGAAGACCTGTTGAGAGCATCTGCCGAGGTTCTCGGGAAGGGAACCTTTGGAGTGAGCTACAAAGCAGCTTTGGAAGACTCAATGACTGTCGTAGTGAAGAGGCTGAATCAAGTGACGACGGTTGGAAAACGAGAATTTGAACAGCAGATGCAGTTGATTGGAAATATTAAGCACGAGAACGTTGTTTCCTTAAGAGCATACTATTATTCAAAGGACGAGAAACTCATGGTCTATGACTACTATGAACAAGGGAGTGTGTCTGCAATGTTACATGGTAAGGAAGGAGATGGCTTACATGTGTTAGATTGGGATACTCGGATGAAAATTGCTATTGGAGCAGCTCGAGGTCTTGCTCATATTCACACAGAAAATGGTGGAAAATGTTCCCATGGAAACGTCAGAGCTTCAAACATTTTCCTCAACTCTAAAGGATATGGTTGTGTATCCGACGTTGGTTTGGCTGCGTTGATGAATTCAATTCTACTACCAGCCACAAGAACCCCAGGTTACCGAGCGCCTGAATTGACCGACACTCGAAGAGTATCACACGCAGCTGATGTCTACAGTTTCGGGGTGGTGTTGCTGGAGCTTCTGACTGGAAAATCTCCCATACATGTAGAAGGTTGTAATGAAGTTGTTAATTTGGTGAAGTGGGTGAACTCTGTGGTGAGGGAGGAATGGACAGCAGAAGTGTTTGATGTTGAGCTTCTCAGGTATCCAAACATAGAAGAAGAGATGGTGGAGATGCTGCAAATTGGGTTGTCTTGTGTTGCCAAAATGCCCGAGCAAAGGCCAAAAATGACAGATATAATGTCGAGAATCGAGCAAGTTCGACAACACAGTACAGGAACCCAACCGTCATCGGGGTCAAAATCAGCATATTCAACTCCCGTTCATGGTCCCACAAGCAGAAACGGTTCTATAAAATTCATTCCGCACCGAATCACCATTAGTTTTCCATCTCCTTCATCGTTTCTCATCCTCATCCTCTCTTCGTCTTCTTCACAACAAACCCTCACACCAGACCTAAAGCGCCTTCACGAGAACCTCTCTCTTGATTTTTCTTAG 2034 43.12 MMKNSFIFLEILLFLAFIWPGVFTEPVEDKQALLDFFHNIPHSPSLNWNESSSVCKSWTGVFCNSDESRVVALRLPGTGLRGPIPANTLSRLTALEILSLRLNRISGPFPFDFSKLESLNSLYLQYNKFSGPLPLDFSVWNNLSVIDLSNNLFNGSIPSSISKLSHLTVLNLANNSFSGEIPNLDIPSLQRLDLSNNNLTGNVPHSLQRFPSWVFSGNNVTQEHSAIPPSFPLQPPTAQPTGKGKGLSQSAILGIAIGSSVIGFILLAVLLTACWLKKRKENMSSPMEPKKKEASVKKRGFESQEQKNNLNFFQDSNLAFDLEDLLRASAEVLGKGTFGVSYKAALEDSMTVVVKRLNQVTTVGKREFEQQMQLIGNIKHENVVSLRAYYYSKDEKLMVYDYYEQGSVSAMLHGKEGDGLHVLDWDTRMKIAIGAARGLAHIHTENGGKCSHGNVRASNIFLNSKGYGCVSDVGLAALMNSILLPATRTPGYRAPELTDTRRVSHAADVYSFGVVLLELLTGKSPIHVEGCNEVVNLVKWVNSVVREEWTAEVFDVELLRYPNIEEEMVEMLQIGLSCVAKMPEQRPKMTDIMSRIEQVRQHSTGTQPSSGSKSAYSTPVHGPTSRNGSIKFIPHRITISFPSPSSFLILILSSSSSQQTLTPDLKRLHENLSLDFS 677
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
5 9037388 9041851 + CcPI632755_05g010270.1 Cco05g1027 178655
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Cco05g1027 677 FunFam pollen receptor-like kinase 1 296 402 - -
Cco05g1027 677 FunFam protein STRUBBELIG-RECEPTOR FAMILY 8 403 610 - -
Cco05g1027 677 Gene3D Phosphorylase Kinase; domain 1 292 402 - -
Cco05g1027 677 Pfam Leucine rich repeat N-terminal domain 28 64 IPR013210 -
Cco05g1027 677 MobiDBLite consensus disorder prediction 599 629 - -
Cco05g1027 677 ProSiteProfiles Protein kinase domain profile. 327 605 IPR000719 GO:0004672(InterPro)|GO:0005524(InterPro)|GO:0006468(InterPro)
Cco05g1027 677 Pfam Protein tyrosine and serine/threonine kinase 331 595 IPR001245 GO:0004672(InterPro)|GO:0006468(InterPro)
Cco05g1027 677 SUPERFAMILY Protein kinase-like (PK-like) 331 596 IPR011009 -
Cco05g1027 677 Pfam Leucine Rich Repeat 118 138 IPR001611 GO:0005515(InterPro)
Cco05g1027 677 Pfam Leucine Rich Repeat 188 209 IPR001611 GO:0005515(InterPro)
Cco05g1027 677 Pfam Leucine Rich Repeat 142 164 IPR001611 GO:0005515(InterPro)
Cco05g1027 677 Pfam Leucine Rich Repeat 166 183 IPR001611 GO:0005515(InterPro)
Cco05g1027 677 SUPERFAMILY L domain-like 38 213 - -
Cco05g1027 677 MobiDBLite consensus disorder prediction 599 625 - -
Cco05g1027 677 PANTHER OS05G0588300 PROTEIN 10 613 IPR050994 -
Cco05g1027 677 Gene3D Ribonuclease Inhibitor 27 234 IPR032675 -
Cco05g1027 677 Gene3D Transferase(Phosphotransferase) domain 1 403 617 - -
Cco05g1027 677 FunFam Probable inactive receptor kinase RLK902 26 185 - -
       

Duplication type information

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Cco05g1027 Cco-Chr5:9037388 Cco11g0287 Cco-Chr11:2900088 8.80E-121 dispersed
Cco01g0066 Cco-Chr1:501709 Cco05g1027 Cco-Chr5:9037388 3.90E-158 wgd
Cco01g0209 Cco-Chr1:1983287 Cco05g1027 Cco-Chr5:9037388 1.10E-167 wgd
Cco05g1027 Cco-Chr5:9037388 Cco07g1549 Cco-Chr7:29522734 3.60E-50 wgd
       

Transcription factors information

Select Gene Hmm_acc Hmm_name Score E-value Regulatory Factors Family
86843 PF07714 PK_Tyr_Ser-Thr 1.30E-34 CL0016 Cco PK
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Cco05g1027 - - - 0.0