Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Cco05g1038 ATGGAGAATTTTGGGGAACGGGATCAAAACAAGCTCAAAAATGAGCTGCTTAAAGGCAAGGAATTAGCAAAGCAACTCCAAATTCATCTCAATATGAGACCATCCCCATCATCCATGGCTGCTTCTTCTTCTTCTTATTCAAATGATAATGGTGGAGAATTATTAGTTCAAGAGATTTTATGTTCATATGAAAAGGCACTGTCTTTGCTCAACTCAAATGGAATCCAAATATCTGAATCTCCTTCATCTCTTAATGGAGGAAGTCCAAGAAGTGAAGACTCTGACCGTGAATTCAAGGACCTATTTGATCAAACAAATGCTAATTCTTCCCGCAGAAGGAACATTCTTCCAATTTGGACACAGAAATTCCAAGTTAGTCCAGGGATGGCCCTTGAAGGCTCTCTTGATGATGGCTTCTGCTGGAGGAAATATGGTCAAAAAGGCATTCTTGGTGCCAAACATCCAAGGGGGTACTATAGATGCACATACAGGAACCTCCAAGGTTGTCTTGCAACCAAACAAGTTCAAAGGTCCGATGACAATCCGACCGTCTTTGAAATCACGTACCGAGGAAAGCATAGTTGCAGCCAAGTTTCCAATCTTAGTACTCCATCTACAACGACACCAAAGTTTCAGCAACAAAACCAACAGACATCACCTGATGCTCTCTTGAACTCATGGGCATGCTTAAGAGTCATAACTCAAAACCTTGACACGACAATTCATGAAACCCCAACATTGTCATTTCATTACGACGGGGCAGACCGTGTCAAAACGTCGACTGTGGACGTCAACTTTGCCGAGCTTTCTCCATGTTCTTCATTTATGTCCCCAACAACATCTGGTTCTGGGTTGAGCTATTTGTCTGCCTCATCAAGTGGGTTGAGTGAAGGATTTGTTGGGAATCAGAAGTTGGATTTGCAACCAAACAAATGCGAGATTTTCTCGTCACCAACTTCAGCTTTGGACTCTGAAGCTCATGCCTTAGACTTCCCATTTGGTGACCTTCAATTGGACCCAACTTTCACATTTGACGACACCAATTTCTTCTCCTAA 1056 42.42 MENFGERDQNKLKNELLKGKELAKQLQIHLNMRPSPSSMAASSSSYSNDNGGELLVQEILCSYEKALSLLNSNGIQISESPSSLNGGSPRSEDSDREFKDLFDQTNANSSRRRNILPIWTQKFQVSPGMALEGSLDDGFCWRKYGQKGILGAKHPRGYYRCTYRNLQGCLATKQVQRSDDNPTVFEITYRGKHSCSQVSNLSTPSTTTPKFQQQNQQTSPDALLNSWACLRVITQNLDTTIHETPTLSFHYDGADRVKTSTVDVNFAELSPCSSFMSPTTSGSGLSYLSASSSGLSEGFVGNQKLDLQPNKCEIFSSPTSALDSEAHALDFPFGDLQLDPTFTFDDTNFFS 351
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
5 9157047 9158419 - CcPI632755_05g010380.1 Cco05g1038 178666

Annotation

Select Seq ID Length Analysis Description Start End IPR GO
Cco05g1038 351 Pfam WRKY DNA -binding domain 136 195 IPR003657 GO:0003700(InterPro)|GO:0006355(InterPro)|GO:0043565(InterPro)
Cco05g1038 351 FunFam WRKY transcription factor 53 121 198 - -
Cco05g1038 351 MobiDBLite consensus disorder prediction 198 217 - -
Cco05g1038 351 SUPERFAMILY WRKY DNA-binding domain 134 197 IPR036576 GO:0003700(InterPro)|GO:0006355(InterPro)|GO:0043565(InterPro)
Cco05g1038 351 ProSiteProfiles WRKY domain profile. 130 194 IPR003657 GO:0003700(InterPro)|GO:0006355(InterPro)|GO:0043565(InterPro)
Cco05g1038 351 Gene3D WRKY domain 129 197 IPR036576 GO:0003700(InterPro)|GO:0006355(InterPro)|GO:0043565(InterPro)
Cco05g1038 351 SMART WRKY_cls 135 197 IPR003657 GO:0003700(InterPro)|GO:0006355(InterPro)|GO:0043565(InterPro)
Cco05g1038 351 PANTHER WRKY TRANSCRIPTION FACTOR 30-RELATED-RELATED 13 220 IPR044810 GO:0000976(PANTHER)|GO:0003700(PANTHER)|GO:0003700(InterPro)|GO:0005634(PANTHER)
       

Pathway

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Cco05g1038 - - - - 0.0
       

Dupl-types

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Cco05g1038 Cco-Chr5:9157047 Cco09g0945 Cco-Chr9:8882579 1.10E-29 dispersed
Cco05g0119 Cco-Chr5:959414 Cco05g1038 Cco-Chr5:9157047 1.70E-35 wgd
Cco05g1038 Cco-Chr5:9157047 Cco07g1575 Cco-Chr7:29741805 1.10E-42 wgd
       

Deco-Alignment

Select Vvi1 Blo1 Blo2 Bda1 Bda2 Bpe1 Bpe2 Bma1 Bma2 Cmo1 Cmo2 Cma1 Cma2 Car1 Car2 Sed1 Cpe1 Cpe2 Bhi1 Tan1 Cmetu1 Lac1 Hepe1 Mch1 Lcy1 Cla1 Cam1 Cec1 Cco1 Clacu1 Cmu1 Cre1 Cone1 Cone2 Cone3 Cone4 Lsi1 Csa1 Chy1 Cme1 Blo3 Blo4 Bda3 Bda4 Bpe3 Bpe4 Bma3 Bma4 Sed2 Cmo3 Cmo4 Cma3 Cma4 Car3 Car4 Cpe3 Cpe4 Bhi2 Tan2 Cmetu2 Lac2 Hepe2 Mch2 Lcy2 Cla2 Cam2 Cec2 Cco2 Clacu2 Cmu2 Cre2 Lsi2 Csa2 Chy2 Cme2
Vvi16g867 . . Bda05g00111 . Bpe03g00242 . Bma10g01288 . Cmo16g00074 Cmo18g01329 . . . . . . Cpe14g00056 Bhi01g01452 Tan01g0147 . . Hepe07g0088 Mch10g0087 . . . . . . . . . . . . . . . . Blo07g00349 . . . . . . . . . . Cma16g00071 Cma18g01300 Car16g00062 Car18g01216 Cpe09g00042 . . . . . . . . Cla05g00948 Cam05g1039 Cec05g1044 Cco05g1038 Clacu05g1030 Cmu05g0980 Cre05g1059 . Csa03g02198 Chy06g01255 .
       

Syn-Orthogroups

Select Orthogroup Bda Bhi Blo Bma Bpe Cam Car Cco Cec Chy Cla Clacu Cma Cme Cmetu Cmo Cmu Cone Cpe Cre Csa HCH Hepe Lac Lcy Lsi Mch Sed Tan Vvi Total
OG0007354 1 2 1 2 1 1 2 1 1 1 1 1 2 1 1 2 1 0 2 1 1 1 1 1 1 1 1 1 2 1 36
       

Regulatory proteins

Select Gene Hmm_acc Hmm_name Score E-value Regulatory Factors Family
59279 PF03106 WRKY 3.40E-25 CL0274 Cco TF