Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Cco05g1042 ATGTTGCCACCTGGCTTCTCCTCTTCGGTGCCAATGCTTCGTAAAGCCACCATTTTCTCTCTCTTTCCCCCTATTTCTCTCCCCTCTCTCTTGTTTATCTCCTTTTTCTTTTCCCTGGTACTCCATTCTGTCCCGATTCTTCCATTTTCTACCCTGACTGTTGGCTTAGATGATACGGGTGCATCGGAAAATCGTGGGCCGGTTGTTGATAAGCATCCAGAGAAAGATGAAGATGGTGGCTATACCAGTGGAGGGTGGAAAAGTGAAGATGGGAAACTTAGTTGGGGGTATTCAAGTTTCAGAGGGAAGAGGGCAACCATGGAAGATTTCTTTGATATTAAAATGTCGAAGGTTAATGGTCAAACCGTCTGCCTTTTTGGCATCTTTGATGGTCACGGTGGATCAAGAGCTGCAGAGTTTTTGAAGGACCATCTCTTTGAGAATCTGATGAAGCACCCAAAATTTTTGATGGATACCAAATTAGCTATCAGTGAAACATATCAACAGACGGATGCTGAATTTTTAAATTCGGAAAAGGATACTTTAAGGGACGATGGCTCTACTGCTTCAACAGCTTTGCTGGTTGGCAATCATCTCTATGTTGCCAATGTTGGAGATTCACGTACTATTATATCAAAGGGGGGTGAAGCGATCCCTCTTTCCGAGGACCATAAACCAAACAGAACTGACGAGCGGAGGAGAATTGAAAATGCTGGGGGTGTTGTCATGTGGGCTGGCACTTGGAGGGTAGGAGGAGTGTTAGCAATGTCCCGCGCTTTCGGTAACAAGATGTTGAAGCAGTTTGTTGTGGCGGATCCTGATATTCAGGATCTTGAAGTAGACAAGGACATCGAGTTGCTTGTTCTCGCAAGTGATGGACTTTGGGACGTGGTACGCAACGAGGATGCAGTATTAGTTGCAGGGAAGGAAGATGAACCGGAGGCAGCTGCTCGGAAGCTAACTGAAGCAGCGTTTACCCGTGGTAGCGCTGACAATATAACATGCATCGTGGTGAAGTTTCATCATGACAATGCAGGTCCTGCTGCGGATACTCGAGAAAACAACTAA 1068 45.88 MLPPGFSSSVPMLRKATIFSLFPPISLPSLLFISFFFSLVLHSVPILPFSTLTVGLDDTGASENRGPVVDKHPEKDEDGGYTSGGWKSEDGKLSWGYSSFRGKRATMEDFFDIKMSKVNGQTVCLFGIFDGHGGSRAAEFLKDHLFENLMKHPKFLMDTKLAISETYQQTDAEFLNSEKDTLRDDGSTASTALLVGNHLYVANVGDSRTIISKGGEAIPLSEDHKPNRTDERRRIENAGGVVMWAGTWRVGGVLAMSRAFGNKMLKQFVVADPDIQDLEVDKDIELLVLASDGLWDVVRNEDAVLVAGKEDEPEAAARKLTEAAFTRGSADNITCIVVKFHHDNAGPAADTRENN 355
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
5 9193290 9198105 - CcPI632755_05g010420.1 Cco05g1042 178670
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Cco05g1042 355 Gene3D - 86 345 IPR036457 -
Cco05g1042 355 FunFam Probable protein phosphatase 2C 76 86 346 - -
Cco05g1042 355 CDD PP2Cc 96 340 IPR001932 -
Cco05g1042 355 SUPERFAMILY PP2C-like 90 341 IPR036457 -
Cco05g1042 355 ProSitePatterns PPM-type phosphatase domain signature. 125 133 IPR000222 GO:0043169(InterPro)
Cco05g1042 355 SMART PP2C_4 84 338 IPR001932 -
Cco05g1042 355 SMART PP2C_SIG_2 106 340 IPR001932 -
Cco05g1042 355 ProSiteProfiles PPM-type phosphatase domain profile. 94 340 IPR001932 -
Cco05g1042 355 PANTHER PROTEIN PHOSPHATASE 84 339 IPR015655 GO:0004722(InterPro)|GO:0004722(PANTHER)|GO:0006470(InterPro)|GO:0035970(PANTHER)
Cco05g1042 355 MobiDBLite consensus disorder prediction 64 83 - -
Cco05g1042 355 Pfam Protein phosphatase 2C 98 333 IPR001932 -
Cco05g1042 355 MobiDBLite consensus disorder prediction 63 85 - -
       

Duplication type information

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Cco05g1042 Cco-Chr5:9193290 Cco05g1832 Cco-Chr5:27225870 1.10E-93 dispersed
Cco05g1042 Cco-Chr5:9193290 Cco05g1048 Cco-Chr5:9269419 5.60E-34 proximal
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Cco05g1042 K17506 - csv:101203681 584.719