Gene search
Sequence information

Select | Gene | Cds | Cds_length | GC_content | Pep | Pep_length |
---|---|---|---|---|---|---|
Cco05g1042 | ATGTTGCCACCTGGCTTCTCCTCTTCGGTGCCAATGCTTCGTAAAGCCACCATTTTCTCTCTCTTTCCCCCTATTTCTCTCCCCTCTCTCTTGTTTATCTCCTTTTTCTTTTCCCTGGTACTCCATTCTGTCCCGATTCTTCCATTTTCTACCCTGACTGTTGGCTTAGATGATACGGGTGCATCGGAAAATCGTGGGCCGGTTGTTGATAAGCATCCAGAGAAAGATGAAGATGGTGGCTATACCAGTGGAGGGTGGAAAAGTGAAGATGGGAAACTTAGTTGGGGGTATTCAAGTTTCAGAGGGAAGAGGGCAACCATGGAAGATTTCTTTGATATTAAAATGTCGAAGGTTAATGGTCAAACCGTCTGCCTTTTTGGCATCTTTGATGGTCACGGTGGATCAAGAGCTGCAGAGTTTTTGAAGGACCATCTCTTTGAGAATCTGATGAAGCACCCAAAATTTTTGATGGATACCAAATTAGCTATCAGTGAAACATATCAACAGACGGATGCTGAATTTTTAAATTCGGAAAAGGATACTTTAAGGGACGATGGCTCTACTGCTTCAACAGCTTTGCTGGTTGGCAATCATCTCTATGTTGCCAATGTTGGAGATTCACGTACTATTATATCAAAGGGGGGTGAAGCGATCCCTCTTTCCGAGGACCATAAACCAAACAGAACTGACGAGCGGAGGAGAATTGAAAATGCTGGGGGTGTTGTCATGTGGGCTGGCACTTGGAGGGTAGGAGGAGTGTTAGCAATGTCCCGCGCTTTCGGTAACAAGATGTTGAAGCAGTTTGTTGTGGCGGATCCTGATATTCAGGATCTTGAAGTAGACAAGGACATCGAGTTGCTTGTTCTCGCAAGTGATGGACTTTGGGACGTGGTACGCAACGAGGATGCAGTATTAGTTGCAGGGAAGGAAGATGAACCGGAGGCAGCTGCTCGGAAGCTAACTGAAGCAGCGTTTACCCGTGGTAGCGCTGACAATATAACATGCATCGTGGTGAAGTTTCATCATGACAATGCAGGTCCTGCTGCGGATACTCGAGAAAACAACTAA | 1068 | 45.88 | MLPPGFSSSVPMLRKATIFSLFPPISLPSLLFISFFFSLVLHSVPILPFSTLTVGLDDTGASENRGPVVDKHPEKDEDGGYTSGGWKSEDGKLSWGYSSFRGKRATMEDFFDIKMSKVNGQTVCLFGIFDGHGGSRAAEFLKDHLFENLMKHPKFLMDTKLAISETYQQTDAEFLNSEKDTLRDDGSTASTALLVGNHLYVANVGDSRTIISKGGEAIPLSEDHKPNRTDERRRIENAGGVVMWAGTWRVGGVLAMSRAFGNKMLKQFVVADPDIQDLEVDKDIELLVLASDGLWDVVRNEDAVLVAGKEDEPEAAARKLTEAAFTRGSADNITCIVVKFHHDNAGPAADTRENN | 355 |
Gff information

Chromosome | Start | End | Strand | Old_gene | Gene | Num |
---|---|---|---|---|---|---|
5 | 9193290 | 9198105 | - | CcPI632755_05g010420.1 | Cco05g1042 | 178670 |
Annotation information

Select | Seq ID | Length | Analysis | Description | Start | End | IPR | GO |
---|---|---|---|---|---|---|---|---|
Cco05g1042 | 355 | Gene3D | - | 86 | 345 | IPR036457 | - | |
Cco05g1042 | 355 | FunFam | Probable protein phosphatase 2C 76 | 86 | 346 | - | - | |
Cco05g1042 | 355 | CDD | PP2Cc | 96 | 340 | IPR001932 | - | |
Cco05g1042 | 355 | SUPERFAMILY | PP2C-like | 90 | 341 | IPR036457 | - | |
Cco05g1042 | 355 | ProSitePatterns | PPM-type phosphatase domain signature. | 125 | 133 | IPR000222 | GO:0043169(InterPro) | |
Cco05g1042 | 355 | SMART | PP2C_4 | 84 | 338 | IPR001932 | - | |
Cco05g1042 | 355 | SMART | PP2C_SIG_2 | 106 | 340 | IPR001932 | - | |
Cco05g1042 | 355 | ProSiteProfiles | PPM-type phosphatase domain profile. | 94 | 340 | IPR001932 | - | |
Cco05g1042 | 355 | PANTHER | PROTEIN PHOSPHATASE | 84 | 339 | IPR015655 | GO:0004722(InterPro)|GO:0004722(PANTHER)|GO:0006470(InterPro)|GO:0035970(PANTHER) | |
Cco05g1042 | 355 | MobiDBLite | consensus disorder prediction | 64 | 83 | - | - | |
Cco05g1042 | 355 | Pfam | Protein phosphatase 2C | 98 | 333 | IPR001932 | - | |
Cco05g1042 | 355 | MobiDBLite | consensus disorder prediction | 63 | 85 | - | - |
Duplication type information

Select | Gene1 | Location1 | Gene2 | Location2 | E-value | Duplicated-type |
---|---|---|---|---|---|---|
Cco05g1042 | Cco-Chr5:9193290 | Cco05g1832 | Cco-Chr5:27225870 | 1.10E-93 | dispersed | |
Cco05g1042 | Cco-Chr5:9193290 | Cco05g1048 | Cco-Chr5:9269419 | 5.60E-34 | proximal |
Pathway information

Select | Query | KO | Definition | Second KO | KEGG Genes ID | GHOSTX Score |
---|---|---|---|---|---|---|
Cco05g1042 | K17506 | - | csv:101203681 | 584.719 |