Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Cco05g1044 ATGAATTCAGCTTTCCACAGAGGGTTGGATTCTAGTTTTGATGGAATTAGAAGAACTGAGAAGCTACTGAAATCTTCCTTTTCTAACAAACTCATGCCTGTAGGCTTGCCCTCAGAGGAGAAAATTCTTGATCCACAAGGGCCATTTCTTCAAAGTTGGAACAAGATATTTGTGCTGTCTTGTGTGATTTCTGTTTCGTTGGATCCTTTGTTCTTTTATGTTCCTGTGATTGATAATAGAAAGATGTGCCTTAGGTTAGATGGGAAAGTGGAGGCTGTAGTCTGTATATTGCGATTTTTTACAGATTTGTTCTATGTTGTGCATATTGTTTTTCAGTTTCGTACAAGATTTATTGGTCCCTCTTCCCGAGTATTTGGAAGAGGTGTTTTAGTAGAAGATTCCTTGACAATAGCAACGAGGTATCTGTCATCATACTTTCTAATTGATATTTCTTCAGTTCTCCCACTTCCACAGGTGGTGATTCTGATAATGAGAGGTTCGAGATCCTTGAATACGAAGGACTTGCTGAAATATGTTGTATTATGTCAATTTTTGCCAAGGTTTCTTCGAATCTATCCTATGTACAAAGAAGTTACAAGGACCTCGGGCATACTCATTGAAATGGCTTGGGCAGGAGCTGCATTTAATCTCTTTCTCTACATGCTAGCTGGCCACGTATTTGGGGCAATCTGGTACTTATGTTCCATAGAACGAGCAGCCCAGTGCTGGCAAGATGCTTGTAGCAAGCATCCTGACTGTACCTTTACTTCCTTGTATTGTGATCATAATTGCAGTAATGAAGGGAATCTATTCCTCACTGTTATGTGCCCTTCCGCCAAAAAGGCAAATATAGGACCTTTTAACTTTGGAATATTCATTCAAGCCCTTCAACCCGATATTGTGGAGTCGGATTTTCCGAAGAAGTTCCTTCACTGCTTCTGGTGGGGCTTGAGGAATCTAAGGTTCCAATGTTTGAAAAGATGGATGAACAATTGTTGGAGGCGATGTGTGCTCGTCTCAAGCCAGTGCTGTGCATAG 1038 40.75 MNSAFHRGLDSSFDGIRRTEKLLKSSFSNKLMPVGLPSEEKILDPQGPFLQSWNKIFVLSCVISVSLDPLFFYVPVIDNRKMCLRLDGKVEAVVCILRFFTDLFYVVHIVFQFRTRFIGPSSRVFGRGVLVEDSLTIATRYLSSYFLIDISSVLPLPQVVILIMRGSRSLNTKDLLKYVVLCQFLPRFLRIYPMYKEVTRTSGILIEMAWAGAAFNLFLYMLAGHVFGAIWYLCSIERAAQCWQDACSKHPDCTFTSLYCDHNCSNEGNLFLTVMCPSAKKANIGPFNFGIFIQALQPDIVESDFPKKFLHCFWWGLRNLRFQCLKRWMNNCWRRCVLVSSQCCA 345
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
5 9207580 9216051 + CcPI632755_05g010440.1 Cco05g1044 178672
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Cco05g1044 345 PANTHER CYCLIC NUCLEOTIDE-GATED ION CHANNEL 15-RELATED-RELATED 37 320 - -
Cco05g1044 345 SUPERFAMILY Voltage-gated potassium channels 44 317 - -
Cco05g1044 345 Gene3D - 55 317 - -
Cco05g1044 345 Pfam Ion transport protein 52 336 IPR005821 GO:0005216(InterPro)|GO:0006811(InterPro)|GO:0016020(InterPro)|GO:0055085(InterPro)
       

Duplication type information

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Cco05g0112 Cco-Chr5:902394 Cco05g1044 Cco-Chr5:9207580 1.20E-13 dispersed
Cco05g1044 Cco-Chr5:9207580 Cco10g1454 Cco-Chr10:27664234 5.70E-76 dispersed
Cco05g1044 Cco-Chr5:9207580 Cco05g1045 Cco-Chr5:9223707 7.50E-52 tandem
Cco01g0051 Cco-Chr1:383331 Cco05g1044 Cco-Chr5:9207580 1.50E-110 wgd
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Cco05g1044 K05391 - csv:101214911 534.258