Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Cco05g1048 ATGCGGTCCCCGCTACCCCTAGGTGGCCTCCATCCAAACACATTCATAAATCCAACGGGTCATATTCATTCTTCTTTTAAACTATCATTGAACTGCCGCTTCAATCCTTTCTCATCATTTCCTTTCTTTTTCTCCCTCTTTTTCGTGCATTCACTGAACAAGCTGCAGCTCAGTAATAGCAGCCGGAACTTCCTCCGACGGCCGGTCGCTGGAATGTGCGATCCCGCTACCATGATTAAAACCAAGAATGCCCGCCGGAGACGGCTGAGAGTTCGTAAACTGAGGTACAAATGGCAGAGGAAGGTGCACGCGGCGGAAGAAGGTGAGGGCAATGAATTAAGTGATAATGGAGTTTCCAAATCGAATTGTGATCAAGTACTGGTCTCTGAGAAGGAATCGTCTTCGGCGTTGGTCTGTCGAGTGTATAGCGAGATGTCGATTATAGGGCGGAGGAAGGAGATGGAAGATGAAGTGAGAGTGGAATTGGGATTGACGACGATTAATGATGAGAAGTACAATTTCTTCGCCGTGTACGATGGACACGGCGGCGCTCAGGTGGCGCAGGTGTGCCGTGAACGGTTGCACCGGATTGTGGCGGAGGAGATTGTGGCTCGGGGAGAGATGGATGAGGCGGAGTGGGGGAGTTTGATGGAGAGGTGCTTTGAGAGAATGGACGACGAAGTGAATAGCGGCGCCGCCACGATGAAGACGATCGGATCGGCGGTTGTTACGGCGGTGATCGGAAAGGAAGAGGTGGTGGTGGCCAATTGCGGCGATTGTCGAGCCGTTTTGGCTAGGGATGGTATTGCGTTGCCCTTGTCTAACGATCATAAGCCTGGTAGAGCTGATGAGTTGAAGAGAATTGAATCTGCCGGTGGAAGGGTCATAAATTGGAATGGCTACCGGGTGCTAGGAGTTCTTGCCACTTCAAGATCCATCGGTGATGAATATCTCAAACCATTTGTTATCTCCAAACCAGAAGTGACTGTGACCAAGAGAACTGACAACGATGAGTTCCTCATATTAGGAAGTGATGGTCTCTGGGACGTTGTTTCGAATGAAATTGCCTGCAACATAGTGAGGAGATGTTTTGGAGGCAAAATGAAGAGGATTTCGTTGAAGGTGGCGAACGACAGCCATGTCGCAGAAGCTGCAGCAGTGTTGGCTGAGCTTGCTGTGGCTCGTGGAAGCAAGGACAACATCAGTCATTACCGGAATCCAACAATTTCGTGGTTTCGTGTAGACTTTTTCAACTCGACTCTACTACAAGCTCGTGGATTCATTTTGACTGTGGATACAGTAGCACTAGAGCTGTGTAAAAAGCATTTGATAGACTTAACGGTGAAGACGCTATCTGGAGAAAGAGTCCAAATCGGTCTATCGACACCAGATCCTCTACAAGGAGGGGACCATGTATTAGATATGGCGACCCAAATGGTGTTCTCCCAATCAAACAAAGACTTGCGAGGGAAACTATTCTAG 1482 48.85 MRSPLPLGGLHPNTFINPTGHIHSSFKLSLNCRFNPFSSFPFFFSLFFVHSLNKLQLSNSSRNFLRRPVAGMCDPATMIKTKNARRRRLRVRKLRYKWQRKVHAAEEGEGNELSDNGVSKSNCDQVLVSEKESSSALVCRVYSEMSIIGRRKEMEDEVRVELGLTTINDEKYNFFAVYDGHGGAQVAQVCRERLHRIVAEEIVARGEMDEAEWGSLMERCFERMDDEVNSGAATMKTIGSAVVTAVIGKEEVVVANCGDCRAVLARDGIALPLSNDHKPGRADELKRIESAGGRVINWNGYRVLGVLATSRSIGDEYLKPFVISKPEVTVTKRTDNDEFLILGSDGLWDVVSNEIACNIVRRCFGGKMKRISLKVANDSHVAEAAAVLAELAVARGSKDNISHYRNPTISWFRVDFFNSTLLQARGFILTVDTVALELCKKHLIDLTVKTLSGERVQIGLSTPDPLQGGDHVLDMATQMVFSQSNKDLRGKLF 493
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
5 9269419 9273520 - CcPI632755_05g010480.1 Cco05g1048 178676
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Cco05g1048 493 PANTHER PROTEIN PHOSPHATASE 115 402 IPR015655 GO:0004722(InterPro)|GO:0004722(PANTHER)|GO:0005634(PANTHER)|GO:0006470(InterPro)|GO:0035970(PANTHER)
Cco05g1048 493 Gene3D - 136 404 IPR036457 -
Cco05g1048 493 Pfam Protein phosphatase 2C 143 401 IPR001932 -
Cco05g1048 493 ProSiteProfiles PPM-type phosphatase domain profile. 141 408 IPR001932 -
Cco05g1048 493 CDD PP2Cc 140 402 IPR001932 -
Cco05g1048 493 FunFam Protein phosphatase 2C 50 126 405 - -
Cco05g1048 493 SMART PP2C_4 132 405 IPR001932 -
Cco05g1048 493 SUPERFAMILY PP2C-like 131 402 IPR036457 -
Cco05g1048 493 ProSitePatterns PPM-type phosphatase domain signature. 174 182 IPR000222 GO:0043169(InterPro)
       

Duplication type information

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Cco03g0125 Cco-Chr3:1230429 Cco05g1048 Cco-Chr5:9269419 2.60E-62 dispersed
Cco05g1048 Cco-Chr5:9269419 Cco07g1464 Cco-Chr7:28756270 7.20E-56 dispersed
Cco05g1042 Cco-Chr5:9193290 Cco05g1048 Cco-Chr5:9269419 5.60E-34 proximal
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Cco05g1048 K14497 - csv:101214188 569.696