Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Cco05g1053 ATGTCGTCTACGCTGCTAGAGGTGACCCGCGCCTCACACGAGGAGGTGGAGCGACTCGAGCGGCTTATAGTGAAGGAGCTTCAAAATGAACCTGCTTCCGGCAAGGACCGTTTGCTACAGAGTCACCGAGTCCGCAATATGATTGACACCATCATGTCCACCACCGACAAACTCGTTGAGATTTATGAAGATAAGGATAGCGCCAGGAAAGATGAGATTGCGGCACTTGGAGGGCAAACAACTTCAGGAACCAACGTTTTTAGTGCATTTTATGATAGACTGAAGGAGATTCGTGAATACCATAGAAGGCATCCAGCTGCACGTGTTGTTGATGTTAATGAGGATGATGGCCTGCTGAAAGAGGAGCCACAAATTGAGTTCAGTGGAGAGGAAGCATTTGGACGGTATCTTGACTTGCACGAACTATACAACCAATATATTAATTCAAAATTTGGAGAGGCCATAGATTACTCTTCATACCTGGATGTTTTTTCACAACCCCAGAAAATCTCTCGGAAACTAAAGGTTTCAAGACAATACAGGGAATACTTGGAGAATCTTCTTGCTTATCTCATTTATTTTTTCCAGCGTACAGAGCCCTTGCAAGATCTTGATCGGATATTCTCAAAGGTTGAATCCGAATTTGAAGAGCGTTGGACTATTGGTACAATTGAAGGATGGGAGAACACTGGTCAAGAAAATGGCCATGATTCCGCCCCGCATAGTCTTATTGATCTTGACTATTATAGCACAGTGGAAGAGCTGGTAGAACTAGGTCCTGAAAGGTTAAAGGAGGGGTTGGCGGCATTGGGACTGAAGACTGGTGGTACAGTTCAGCAGCGTGCAGAGAGGCTTTTCCTCACTAAGAATAAGCCTCTTCAATTGTTGGACAAAAAACATTTTGCAAAACTGTCTCGGCAACCTATTCAAAATGGGGCAGCTGCTGCTTCACAAAACAATGAAAACTTGAAACAAGTTGCCCTGATGGAGGCAAAAATTGAAAAATTGTGCGATCTTCTGGATGAGACAATCGCTCGAACCAAAGACAACATTGTTAAGAAGCAGGCATTAACATATGAGGAAATTGAAGCAGAACGTGAGGAGGAGGAGACACAAGCTGAGTCTGAAAGTGATGATGAAGAGCAACAGATCTATAATCCACTCAAGCTCCCAATGGGTTGGGATGGGAAACCCATACCTTACTGGCTCTACAAGCTTCATGGCCTTGGTCAGGAATTTAAATGTGAGATATGTGGGAACTATAGTTACTGGGGTCGTAGAGCTTTTGAGCGACATTTCAAGGAATGGCGTCATCAGCATGGAATGCGTTGCCTTGGTATTCCAAATACAAAGAACTTTAACGAAATCACATCAATTGAGGAGGCAAAAGACTTGTGGAAAAGAATACAAGAACGACAAGGAGTTAACAAGTGGCGACCAGACCTGGAAGAAGAATACGAAGATAAGGAGGTTCGCAATCCTTCTACTATCAACATCCTCAATGCAGCTGCTAATTTGTGCTGTTCTGACCTGTGGCTGTATGACACTTCAAAATTCAAGGATGCATGGTTTTAA 1575 43.68 MSSTLLEVTRASHEEVERLERLIVKELQNEPASGKDRLLQSHRVRNMIDTIMSTTDKLVEIYEDKDSARKDEIAALGGQTTSGTNVFSAFYDRLKEIREYHRRHPAARVVDVNEDDGLLKEEPQIEFSGEEAFGRYLDLHELYNQYINSKFGEAIDYSSYLDVFSQPQKISRKLKVSRQYREYLENLLAYLIYFFQRTEPLQDLDRIFSKVESEFEERWTIGTIEGWENTGQENGHDSAPHSLIDLDYYSTVEELVELGPERLKEGLAALGLKTGGTVQQRAERLFLTKNKPLQLLDKKHFAKLSRQPIQNGAAAASQNNENLKQVALMEAKIEKLCDLLDETIARTKDNIVKKQALTYEEIEAEREEEETQAESESDDEEQQIYNPLKLPMGWDGKPIPYWLYKLHGLGQEFKCEICGNYSYWGRRAFERHFKEWRHQHGMRCLGIPNTKNFNEITSIEEAKDLWKRIQERQGVNKWRPDLEEEYEDKEVRNPSTINILNAAANLCCSDLWLYDTSKFKDAWF 524
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
5 9331092 9340121 + CcPI632755_05g010530.1 Cco05g1053 178681
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Cco05g1053 524 Pfam Splicing factor SF3a60 binding domain 80 105 IPR021966 -
Cco05g1053 524 Pfam SF3a60/Prp9 C-terminal 389 490 IPR024598 GO:0000398(InterPro)|GO:0003723(InterPro)|GO:0005681(InterPro)
Cco05g1053 524 Coils Coil 352 379 - -
Cco05g1053 524 Pfam Replication stress response SDE2 C-terminal 223 303 IPR025086 -
Cco05g1053 524 PANTHER SPLICING FACTOR SF3A-RELATED 1 481 IPR051421 GO:0000398(PANTHER)|GO:0003723(PANTHER)|GO:0005681(PANTHER)
Cco05g1053 524 MobiDBLite consensus disorder prediction 362 381 - -
Cco05g1053 524 Pfam Pre-mRNA-splicing factor SF3A3, of SF3a complex, Prp9 126 173 IPR031774 -
Cco05g1053 524 ProSiteProfiles Zinc finger matrin-type profile. 413 444 IPR000690 GO:0003676(InterPro)|GO:0005634(InterPro)|GO:0008270(InterPro)
       

Duplication type information

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Cco05g1053 Cco-Chr5:9331092 Cco06g0120 Cco-Chr6:1142864 1.60E-08 dispersed
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Cco05g1053 K12827 - csv:101205916 914.835