Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Cco05g1057 ATGGGCTACGGCAGGCTCCACAAAACCGACCCCGGCGGCACTTCTTCCTCCGCCGCTGCCTTCCAACTCCCCGACCACCCCCTTTCATTATTTACCCCTCCCAACCCAAGGAGAACACGCCTTTTCGTTATTTCCCTTCTTTCTCTCCTTCTCATCGTCGCCGCCGCTGTCTCCGCCACCTTTCTCATCGGACTCCGAACGGCCTCCCCGGCTCGATCCGACCCCAACCTCCCTCGAAAACCAACTCAGGCTATTTCCAAGGCTTGTGGTCGAACTCGCTTCCCGACTCTCTGTGTCAACTCGCTCCTCGATTTCCCTGGTTCTCTCAACGCCAACGAACAGGATCTCGTCCACATTTCCTTCAATATCACTCTCCAGCATCTCAACAAAGCGCTCTATTTGTCCTCTGAGATTTCCTCTCTTCAAATGGATCTTCGTGTTCGTTCCGCTTACGATGCTTGTCTTGAACTCCTTGACGACTCCGTTGATGCTCTCACACGTTCCTTGCAATCCGTCGCGCCTTCTTCCTCCTCCGGCACTCCGCAGCGCCTTGGCTCCTCTGAGGACGTCATTACCTGGCTTAGCGCCGCCCTTACCAATCAAGACACGTGTACGGATGGATTCTCTGAACTCTCCGGCTCGGTCAAAAACCAAATGGCTGATAAACTTCACAATTTGTCCGAACTTGTCAGTAATTGCTTGGCGCTGTTTTCCGGTACTGAAACGAGCGATTTCTCCGGAGTGCCGATTCAGAACAAGCGACGGTTGATGAACGCCGGACACGACGATGATAATTCCGGTAACTTCCCTGGGTGGATGAGTCGGAGAGAAAGGAGGTTACTGACGTTACCGGTGGGAGCGTTACAAGCCGATATTGTGGTTTCTCAGAACGGTAGCGGAACGGTGAAAACGATCGCCGAAGCGATCAAAAAGGCGCCGCAGTACAGTAATAGAAGGACGATCATATACGTGATGGCAGGAAGGTACGAAGAGAAAAATCTGAAGGTGGGGAGAAAGAAAACGAACCTCATGTTTGTGGGGGATGGCAAGGGTAAAACTGTCATTTCGGGTGCTAAAAGTGTCTTTGATAATGTGACAACTTTTCACACGGCGTCGTTTGCGGCCACCGGCGCCGGTATAATCTTGAGGGACATGACATTTGAGAATTGGGCTGGACCGGGGCGCCACCAGGCGGTTGCGCTTCGAGTTGGCGCCGATCATGCGGTGGTGTACCGCTGCAACATAATCGGGTATCAAGACACTCTGTACGTTCATTCCAACCGCCAATTTTACCGAGAATGCGACATCTACGGGACGGTGGATTTCATCTTCGGGAATGCGGCAGTGGTGTTTCAGAACTGCAGCATTTACGCTCGAAAGGCAATGGCGCTTCAAAAGAACACAATCACCGCCCAAAACCGGAAGGATCCGAATCAGAACACCGGAATTTCAATCCACGCCTGCCGGATTTTACCCGCCTCCGATCTAGCATCGTCTAACGGCACAAACCCGACGTATCTTGGCCGCCCGTGGAAATTATACTCCAGAGTCGTGTACATGTTATCGTATATCGGGAGCCACGTGCATCCTCGCGGTTGGTTGGAATGGAACGCAACGTTTGCATTGGACACGCTGTATTACGGTGAGTATATGAATTATGGGCCGGGCGGGGCGGTGGGCCAGAGGGTGACGTGGCCTGGGTATCGAGTCATAACGTCCACGGTGGAGGCGAGTAAGTTCACGGTGGCTCAGTTCATTTATGGCTCCTCATGGTTGCCGTCCACCGGAGTTGCATTCCTCGGAGGGTTAAATGTGTAA 1818 52.92 MGYGRLHKTDPGGTSSSAAAFQLPDHPLSLFTPPNPRRTRLFVISLLSLLLIVAAAVSATFLIGLRTASPARSDPNLPRKPTQAISKACGRTRFPTLCVNSLLDFPGSLNANEQDLVHISFNITLQHLNKALYLSSEISSLQMDLRVRSAYDACLELLDDSVDALTRSLQSVAPSSSSGTPQRLGSSEDVITWLSAALTNQDTCTDGFSELSGSVKNQMADKLHNLSELVSNCLALFSGTETSDFSGVPIQNKRRLMNAGHDDDNSGNFPGWMSRRERRLLTLPVGALQADIVVSQNGSGTVKTIAEAIKKAPQYSNRRTIIYVMAGRYEEKNLKVGRKKTNLMFVGDGKGKTVISGAKSVFDNVTTFHTASFAATGAGIILRDMTFENWAGPGRHQAVALRVGADHAVVYRCNIIGYQDTLYVHSNRQFYRECDIYGTVDFIFGNAAVVFQNCSIYARKAMALQKNTITAQNRKDPNQNTGISIHACRILPASDLASSNGTNPTYLGRPWKLYSRVVYMLSYIGSHVHPRGWLEWNATFALDTLYYGEYMNYGPGGAVGQRVTWPGYRVITSTVEASKFTVAQFIYGSSWLPSTGVAFLGGLNV 605
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
5 9420749 9423245 + CcPI632755_05g010570.1 Cco05g1057 178685
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Cco05g1057 605 Gene3D Invertase/pectin methylesterase inhibitor family protein 82 239 IPR035513 -
Cco05g1057 605 FunFam Pectinesterase 81 240 - -
Cco05g1057 605 SMART PMEI_2 80 236 IPR006501 GO:0004857(InterPro)
Cco05g1057 605 FunFam Pectinesterase 285 603 - -
Cco05g1057 605 SUPERFAMILY Pectin lyase-like 287 601 IPR011050 -
Cco05g1057 605 ProSitePatterns Pectinesterase signature 2. 436 445 IPR033131 -
Cco05g1057 605 SUPERFAMILY Plant invertase/pectin methylesterase inhibitor 83 238 IPR035513 -
Cco05g1057 605 CDD PMEI-like_3 88 238 - -
Cco05g1057 605 PANTHER PECTINESTERASE 43 594 - GO:0030599(PANTHER)|GO:0046910(PANTHER)
Cco05g1057 605 Pfam Plant invertase/pectin methylesterase inhibitor 84 236 IPR006501 GO:0004857(InterPro)
Cco05g1057 605 Gene3D - 285 603 IPR012334 -
Cco05g1057 605 NCBIfam pectinesterase inhibitor domain 58 237 IPR006501 GO:0004857(InterPro)
Cco05g1057 605 Pfam Pectinesterase 291 588 IPR000070 GO:0030599(InterPro)|GO:0042545(InterPro)
       

Duplication type information

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Cco05g1057 Cco-Chr5:9420749 Cco09g0540 Cco-Chr9:4731061 5.80E-132 dispersed
Cco01g0043 Cco-Chr1:307140 Cco05g1057 Cco-Chr5:9420749 3.20E-207 wgd
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Cco05g1057 - - - 0.0