Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Cco05g1060 ATGGATTTGGACAGTATCGAGTGTGTATCTTCTTCAGATGGTCTCGATGAAGACGAGATCCATCTGCACCACACTCTTCATCCTTATTCCCAATCTCTTCATCTTCCCGAGTTGTCCACATCGAAGCAACGTTATGGAAACAACAACAGCGCTGTGAGCGGCCCAACTGCAACTGCGCCGGCAACTAACGTTCATGAATTGCTGGAGTGCCCTGTGTGCACTAATTCTATGTACCCTCCCATTCATCAGTGCCACAATGGACATACCTTATGTTCTACATGTAAAACGAGAGTTCACAATCGGTGCCCAACTTGTAGACAAGAGCTTGGAGATATTAGGTGCTTAGCACTGGAGAAGGTGGCAGAGTCACTTGAACTGCCTTGCAAGTATTATTCGTTGGGTTGCTCTGAGATATTCCCATACTACAGTAAACTTAAGCATGAGGGTTTGTGCAACTACAGACCCTATAGTTGCCCATATGCTGGTTCAGAATGCTCTGCTGTTGGGGACATTCCTTTCCTTGTTGCCCATCTCAGGGATGATCATAAGGTGGATATGCACACTGGCTGCACATTTAACCATCGCTATGTTAAATCCAATCCAAGGGAAGTGGAGAATGCCACTTGGATGCTTACTGTTTTTCATTGTTTTGGTCAATATTTCTGCCTTCACTTTGAAGCTTTTCAGCTTGGCATGGCTCCAGTCTACATGGCTTTCCTGCGCTTCATGGGCGATGAGAATGAGGCGCGAACCTACAGCTACAGTCTCGAGGTTGGTGGATATGGGCGAAAACTGATATGGGAGGGTACACCACGAAGTATTAGAGATAGTCATCGAAAAGTCAGGGACAGCCACGATGGATTAATCATCCAAAGAAATATGGCTCTTTTCTTCTCTGGTGGGGACAGAAAGGAGCTGAAGCTGAGGGTTACAGGAAGGATATGGAAGGAACAAAACCCAGATGCTGGTGTCTGCATACCAAACTTTTGTAGCTAA 996 45.98 MDLDSIECVSSSDGLDEDEIHLHHTLHPYSQSLHLPELSTSKQRYGNNNSAVSGPTATAPATNVHELLECPVCTNSMYPPIHQCHNGHTLCSTCKTRVHNRCPTCRQELGDIRCLALEKVAESLELPCKYYSLGCSEIFPYYSKLKHEGLCNYRPYSCPYAGSECSAVGDIPFLVAHLRDDHKVDMHTGCTFNHRYVKSNPREVENATWMLTVFHCFGQYFCLHFEAFQLGMAPVYMAFLRFMGDENEARTYSYSLEVGGYGRKLIWEGTPRSIRDSHRKVRDSHDGLIIQRNMALFFSGGDRKELKLRVTGRIWKEQNPDAGVCIPNFCS 331
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
5 9461056 9464744 - CcPI632755_05g010600.1 Cco05g1060 178688
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Cco05g1060 331 CDD RING-HC_SIAHs 68 106 - -
Cco05g1060 331 Gene3D Apoptosis, Tumor Necrosis Factor Receptor Associated Protein 2; Chain A 177 311 IPR008974 GO:0005515(InterPro)
Cco05g1060 331 FunFam E3 ubiquitin-protein ligase SINAT3 11 121 - -
Cco05g1060 331 CDD Sina 184 312 - -
Cco05g1060 331 PANTHER E3 UBIQUITIN PROTEIN LIGASE SIAH 49 313 IPR052088 GO:0005737(PANTHER)|GO:0061630(PANTHER)
Cco05g1060 331 ProSiteProfiles Zinc finger SIAH-type profile. 123 183 IPR013010 GO:0008270(InterPro)
Cco05g1060 331 Pfam Sina, zinc finger 119 194 - -
Cco05g1060 331 ProSiteProfiles Zinc finger RING-type profile. 70 106 IPR001841 -
Cco05g1060 331 Pfam Sina, TRAF-like domain 214 311 IPR018121 GO:0005737(InterPro)|GO:0006511(InterPro)|GO:0007275(InterPro)
Cco05g1060 331 Gene3D Zinc/RING finger domain, C3HC4 (zinc finger) 118 176 IPR013083 -
Cco05g1060 331 Pfam E3 ubiquitin-protein ligase sina/sinah, RING finger 70 105 IPR049548 -
Cco05g1060 331 FunFam E3 ubiquitin-protein ligase SINAT5-like 179 311 - -
Cco05g1060 331 SUPERFAMILY RING/U-box 57 109 - -
Cco05g1060 331 FunFam E3 ubiquitin-protein ligase SINAT3 122 178 - -
Cco05g1060 331 SUPERFAMILY TRAF domain-like 123 315 - -
Cco05g1060 331 Gene3D Zinc/RING finger domain, C3HC4 (zinc finger) 63 112 IPR013083 -
       

Duplication type information

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Cco04g0173 Cco-Chr4:4180872 Cco05g1060 Cco-Chr5:9461056 1.10E-131 dispersed
Cco05g1060 Cco-Chr5:9461056 Cco06g0128 Cco-Chr6:1240824 4.00E-143 dispersed
Cco05g1060 Cco-Chr5:9461056 Cco05g1061 Cco-Chr5:9465734 2.20E-194 tandem
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Cco05g1060 K04506 - csv:105434867 692.575