Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Cco05g1061 ATGGCCGCCGCTGCTCTCAGGTCCAGGTCTTCCAAGGAAGTTGCCACTTTAACCCTTTCTCGTTGTAGACACTGTATATCCAATTCTATTCACGCTGCTACCAACCCCAGTTCTCACTGCATCAACCGTAACAAACCCAACGACCTTTATCTCAACTCGCCTTACCACTTGGTCTCTTTCAAGCCCGTCTCACTCAGAGGCGACTTCGTCGACAACGGGACTCAACCCCCCGATCATCGTAGGATTTACCAGAATTCTACCAAGAACTTGAATCACAAGTTCAGCAAGAGGGGTTGTTTTATGAGCACTTATGGAGACCCGCCGGAGGTGTGGTCTGGAGATGGGATTGTGATTCGTGGGAGTAATTCAAGCTTGAATGGTCGCGGTGCCGGCGGTGGCAACTCCAACTCTGGTTCTGGTGGTGGGTTTGCCTCGAACTCCAATGATGGGTGTTGGGGTGGCTCTAATTTGGGACCTAATTTTCCTACTCCGAAGGAAATCGCCAAGGGGCTTGATAAGTTTGTGATTGGTCAGGAGAGAGCTAAAAAGGTGCTCTCTGTGGGAGTTTACAATCACTACAAGCGCATCTATCATGAATCGCTACAAAGGCCGACAGGAGATACAGTTAACAACAAAGCTGATGCTGTTGATGATGATAAAGTGGAACTTGAGAAAAGTAACATCCTTCTGATGGGGCCAACAGGCTCAGGGAAAACACTACTCGCCAAAACCTTGGCACGGTTTGTTAATGTCCCCTTTGTTATTGCAGATGCAACTACCCTAACACAGGCAGGATATGTTGGAGAAGATGTGGAGTCTATATTATACAAACTTCTGATGGTTGCTGATTATAATGTGGCAGCTGCACAGCAGGGCATTGTTTACATTGATGAAGTCGATAAAATTACCAAGAAGGCAGAGAGCCTTAATATTAGCAGAGATGTGTCAGGAGAGGGCGTGCAGCAGGCATTATTAAAAATGCTAGAAGGAACGATTGTCAATGTGCCTGAGAAGGGCGCACGAAAGCATCCCAGAGGTGAAAATATCCAGATTGACACTAAGGATATTCTTTTCATATGCGGGGGTGCCTTCATTGACTTGGAAAAAACAATCTCAGAAAGGCGCCAAGATTCTTCTTTAGGGTTTGGGGCCCCAGTTCGTGCAAACATGAGGGCAGGTGGTGTTACAGATGCCATGGTTACTTCTTCTCTGTTGGAGACTGTTGAAAGTAGTGATCTCATTGCATATGGGTTGATACCTGAATTTGTTGGTCGATTCCCAATCCTTGTCAGTTTGTCAGCCCTAACAGAAAACCAACTTGTTCAGGTCTTGACAGAGCCAAAAAATGCATTAGGAAAGCAGTATAGAAAGATGTTCCAAATGAATGATGTCAAGCTCCACTTCACAGAAAATGCCCTGAGATTAATAGCAAGAAAGGCAATGTCGAAGAACACTGGAGCACGTGGTTTGCGATCAATATTGGAGAATCTATTGATGGATTCTATGTATGAGATTCCTGATGTTAGAACAGGTGAGAATATAATTGATGCTGTCATCGTTGATGAAGAATCCATTGGGTTGGACAGACCCGGTTCTGGTGCCAAAATTCTTTATGGAAAGGGTGCATTGGATCGCTATCTTTCAGGACAAAAGGTAGAAGAGAGAAAGGCAACAAGTCAGGATTCCGAAAGAGAGCCAGAACCTGAAGGGGAGGTAGAGAAACGAAGAAAAGAACCTCGTCTTTCCGCTAAAAAAGGCCTTCTTTCGTTTCCATTGATCTACCCCTTTTCCTTTTCTTTGCCTTCTTTACGATTACCTCGACGCAATTTGCACCAACTGGTGAAATTTTCAAATTTTTTGTTGTTGTTAATGGATTTGGATAGTATTGAGTGTGTATCATCTTCTGATGGTCTCGATGAAGATGAGATCCATCTTCATCACACTCTTCATCCTTATTCCCATTCTCATCATCATCCAGAGTTGTCAGCGACGAAGCCACGTAATGGAAGCAATAATAGCGGTATAACAGTTCCCACTGCGACTGCTCCCGCCACTAGCGTCCATGAATTGCTTGAGTGCCCTGTCTGTACCAATTCTATGTACCCTCCCATCCATCAGTGCCACAACGGACATACCTTATGTTCTACATGTAAAACACGGGTTCATAATCGTTGCCCTACTTGTAGACAAGAGCTTGGAGATATTAGGTGCTTAGCACTCGAGAAGGTGGCAGAGTCGCTTGAATTGCCTTGCAAGTATTATTCATTGGGATGTACTGAGATATTCCCATACTACAGTAAACTTAAGCACGAGGCTTTGTGCAATTATAGACCCTATAGTTGCCCATATGCTGGTTCGGAATGCTCTGCTGTTGGGGACATTCCTTTCCTTGTTGCCCATCTGAGGGATGATCATAAGGTGGATATGCACACTGGCTGCACATTTAACCATCGCTATGTGAAATCCAATCCAAGGGAAGTGGAAAATGCCACTTGGATGCTTACTGTGTTCCATTGTTTTGGTCAATATTTCTGCCTTCACTTTGAAGCCTTTCAGCTTGGCATGGCCCCAGTCTATATGGCTTTCCTTCGTTTCATGGGTGATGAGAATGAGGCACGAACCTACAGCTACAGTCTCGAGGTTGGTGGATACGGGCGAAAACTAATATGGGAGGGCACCCCGCGAAGTATTAGAGATAGTCATCGAAAAGTGAGGGACAGCCATGATGGGCTAATCATTCAAAGAAATATGGCTCTTTTCTTCTCTGGTGGGGACAGGAAGGAACTGAAACTAAGAGTTACAGGAAGGATATGGAAGGAACAAAACCCAGATGCTGGAGTCTGCATACCGAACCTGTGTAGCTAA 2865 45.03 MAAAALRSRSSKEVATLTLSRCRHCISNSIHAATNPSSHCINRNKPNDLYLNSPYHLVSFKPVSLRGDFVDNGTQPPDHRRIYQNSTKNLNHKFSKRGCFMSTYGDPPEVWSGDGIVIRGSNSSLNGRGAGGGNSNSGSGGGFASNSNDGCWGGSNLGPNFPTPKEIAKGLDKFVIGQERAKKVLSVGVYNHYKRIYHESLQRPTGDTVNNKADAVDDDKVELEKSNILLMGPTGSGKTLLAKTLARFVNVPFVIADATTLTQAGYVGEDVESILYKLLMVADYNVAAAQQGIVYIDEVDKITKKAESLNISRDVSGEGVQQALLKMLEGTIVNVPEKGARKHPRGENIQIDTKDILFICGGAFIDLEKTISERRQDSSLGFGAPVRANMRAGGVTDAMVTSSLLETVESSDLIAYGLIPEFVGRFPILVSLSALTENQLVQVLTEPKNALGKQYRKMFQMNDVKLHFTENALRLIARKAMSKNTGARGLRSILENLLMDSMYEIPDVRTGENIIDAVIVDEESIGLDRPGSGAKILYGKGALDRYLSGQKVEERKATSQDSEREPEPEGEVEKRRKEPRLSAKKGLLSFPLIYPFSFSLPSLRLPRRNLHQLVKFSNFLLLLMDLDSIECVSSSDGLDEDEIHLHHTLHPYSHSHHHPELSATKPRNGSNNSGITVPTATAPATSVHELLECPVCTNSMYPPIHQCHNGHTLCSTCKTRVHNRCPTCRQELGDIRCLALEKVAESLELPCKYYSLGCTEIFPYYSKLKHEALCNYRPYSCPYAGSECSAVGDIPFLVAHLRDDHKVDMHTGCTFNHRYVKSNPREVENATWMLTVFHCFGQYFCLHFEAFQLGMAPVYMAFLRFMGDENEARTYSYSLEVGGYGRKLIWEGTPRSIRDSHRKVRDSHDGLIIQRNMALFFSGGDRKELKLRVTGRIWKEQNPDAGVCIPNLCS 954
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
5 9465734 9478591 - CcPI632755_05g010610.1 Cco05g1061 178689
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Cco05g1061 954 NCBIfam ATP-dependent protease ATP-binding subunit ClpX 160 522 IPR004487 GO:0005524(InterPro)|GO:0006457(InterPro)|GO:0051082(InterPro)|GO:0140662(InterPro)
Cco05g1061 954 Gene3D Zinc/RING finger domain, C3HC4 (zinc finger) 746 801 IPR013083 -
Cco05g1061 954 CDD Sina 807 935 - -
Cco05g1061 954 ProSiteProfiles Zinc finger SIAH-type profile. 746 806 IPR013010 GO:0008270(InterPro)
Cco05g1061 954 SUPERFAMILY P-loop containing nucleoside triphosphate hydrolases 161 520 IPR027417 -
Cco05g1061 954 Pfam C-terminal, D2-small domain, of ClpB protein 435 504 IPR019489 -
Cco05g1061 954 FunFam ATP-dependent Clp protease ATP-binding subunit ClpX 434 533 - -
Cco05g1061 954 Pfam E3 ubiquitin-protein ligase sina/sinah, RING finger 693 728 IPR049548 -
Cco05g1061 954 FunFam E3 ubiquitin-protein ligase SINAT3 745 801 - -
Cco05g1061 954 CDD RING-HC_SIAHs 691 729 - -
Cco05g1061 954 SMART AAA_5 224 386 IPR003593 GO:0016887(InterPro)
Cco05g1061 954 Gene3D Apoptosis, Tumor Necrosis Factor Receptor Associated Protein 2; Chain A 803 934 IPR008974 GO:0005515(InterPro)
Cco05g1061 954 Pfam Sina, zinc finger 742 817 - -
Cco05g1061 954 Pfam Sina, TRAF-like domain 837 934 IPR018121 GO:0005737(InterPro)|GO:0006511(InterPro)|GO:0007275(InterPro)
Cco05g1061 954 Pfam AAA domain (Cdc48 subfamily) 224 428 IPR003959 GO:0005524(InterPro)|GO:0016887(InterPro)
Cco05g1061 954 ProSiteProfiles Zinc finger RING-type profile. 693 729 IPR001841 -
Cco05g1061 954 FunFam E3 ubiquitin-protein ligase SINAT3 634 744 - -
Cco05g1061 954 SUPERFAMILY RING/U-box 680 732 - -
Cco05g1061 954 FunFam E3 ubiquitin-protein ligase SINAT5-like 802 934 - -
Cco05g1061 954 MobiDBLite consensus disorder prediction 651 675 - -
Cco05g1061 954 SMART ClpB_D2_small_2 435 527 IPR019489 -
Cco05g1061 954 Gene3D - 434 531 - -
Cco05g1061 954 Gene3D Zinc/RING finger domain, C3HC4 (zinc finger) 655 745 IPR013083 -
Cco05g1061 954 FunFam CLP protease regulatory subunit CLPX3 mitochondrial 155 433 - -
Cco05g1061 954 PANTHER ATP-DEPENDENT CLP PROTEASE ATP-BINDING SUBUNIT CLPX-LIKE, MITOCHONDRIAL-RELATED 21 551 IPR050052 GO:0005524(PANTHER)|GO:0005759(PANTHER)|GO:0016887(PANTHER)|GO:0051603(PANTHER)
Cco05g1061 954 MobiDBLite consensus disorder prediction 550 580 - -
Cco05g1061 954 SUPERFAMILY TRAF domain-like 746 938 - -
Cco05g1061 954 CDD RecA-like_ClpX 162 432 - -
Cco05g1061 954 Gene3D - 157 433 IPR027417 -
       

Duplication type information

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Cco05g1061 Cco-Chr5:9465734 Cco08g0262 Cco-Chr8:4710629 4.30E-182 dispersed
Cco05g1060 Cco-Chr5:9461056 Cco05g1061 Cco-Chr5:9465734 2.20E-194 tandem
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Cco05g1061 K03544 - csv:101215939 978.008