Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Cco05g1061 ATGGCCGCCGCTGCTCTCAGGTCCAGGTCTTCCAAGGAAGTTGCCACTTTAACCCTTTCTCGTTGTAGACACTGTATATCCAATTCTATTCACGCTGCTACCAACCCCAGTTCTCACTGCATCAACCGTAACAAACCCAACGACCTTTATCTCAACTCGCCTTACCACTTGGTCTCTTTCAAGCCCGTCTCACTCAGAGGCGACTTCGTCGACAACGGGACTCAACCCCCCGATCATCGTAGGATTTACCAGAATTCTACCAAGAACTTGAATCACAAGTTCAGCAAGAGGGGTTGTTTTATGAGCACTTATGGAGACCCGCCGGAGGTGTGGTCTGGAGATGGGATTGTGATTCGTGGGAGTAATTCAAGCTTGAATGGTCGCGGTGCCGGCGGTGGCAACTCCAACTCTGGTTCTGGTGGTGGGTTTGCCTCGAACTCCAATGATGGGTGTTGGGGTGGCTCTAATTTGGGACCTAATTTTCCTACTCCGAAGGAAATCGCCAAGGGGCTTGATAAGTTTGTGATTGGTCAGGAGAGAGCTAAAAAGGTGCTCTCTGTGGGAGTTTACAATCACTACAAGCGCATCTATCATGAATCGCTACAAAGGCCGACAGGAGATACAGTTAACAACAAAGCTGATGCTGTTGATGATGATAAAGTGGAACTTGAGAAAAGTAACATCCTTCTGATGGGGCCAACAGGCTCAGGGAAAACACTACTCGCCAAAACCTTGGCACGGTTTGTTAATGTCCCCTTTGTTATTGCAGATGCAACTACCCTAACACAGGCAGGATATGTTGGAGAAGATGTGGAGTCTATATTATACAAACTTCTGATGGTTGCTGATTATAATGTGGCAGCTGCACAGCAGGGCATTGTTTACATTGATGAAGTCGATAAAATTACCAAGAAGGCAGAGAGCCTTAATATTAGCAGAGATGTGTCAGGAGAGGGCGTGCAGCAGGCATTATTAAAAATGCTAGAAGGAACGATTGTCAATGTGCCTGAGAAGGGCGCACGAAAGCATCCCAGAGGTGAAAATATCCAGATTGACACTAAGGATATTCTTTTCATATGCGGGGGTGCCTTCATTGACTTGGAAAAAACAATCTCAGAAAGGCGCCAAGATTCTTCTTTAGGGTTTGGGGCCCCAGTTCGTGCAAACATGAGGGCAGGTGGTGTTACAGATGCCATGGTTACTTCTTCTCTGTTGGAGACTGTTGAAAGTAGTGATCTCATTGCATATGGGTTGATACCTGAATTTGTTGGTCGATTCCCAATCCTTGTCAGTTTGTCAGCCCTAACAGAAAACCAACTTGTTCAGGTCTTGACAGAGCCAAAAAATGCATTAGGAAAGCAGTATAGAAAGATGTTCCAAATGAATGATGTCAAGCTCCACTTCACAGAAAATGCCCTGAGATTAATAGCAAGAAAGGCAATGTCGAAGAACACTGGAGCACGTGGTTTGCGATCAATATTGGAGAATCTATTGATGGATTCTATGTATGAGATTCCTGATGTTAGAACAGGTGAGAATATAATTGATGCTGTCATCGTTGATGAAGAATCCATTGGGTTGGACAGACCCGGTTCTGGTGCCAAAATTCTTTATGGAAAGGGTGCATTGGATCGCTATCTTTCAGGACAAAAGGTAGAAGAGAGAAAGGCAACAAGTCAGGATTCCGAAAGAGAGCCAGAACCTGAAGGGGAGGTAGAGAAACGAAGAAAAGAACCTCGTCTTTCCGCTAAAAAAGGCCTTCTTTCGTTTCCATTGATCTACCCCTTTTCCTTTTCTTTGCCTTCTTTACGATTACCTCGACGCAATTTGCACCAACTGGTGAAATTTTCAAATTTTTTGTTGTTGTTAATGGATTTGGATAGTATTGAGTGTGTATCATCTTCTGATGGTCTCGATGAAGATGAGATCCATCTTCATCACACTCTTCATCCTTATTCCCATTCTCATCATCATCCAGAGTTGTCAGCGACGAAGCCACGTAATGGAAGCAATAATAGCGGTATAACAGTTCCCACTGCGACTGCTCCCGCCACTAGCGTCCATGAATTGCTTGAGTGCCCTGTCTGTACCAATTCTATGTACCCTCCCATCCATCAGTGCCACAACGGACATACCTTATGTTCTACATGTAAAACACGGGTTCATAATCGTTGCCCTACTTGTAGACAAGAGCTTGGAGATATTAGGTGCTTAGCACTCGAGAAGGTGGCAGAGTCGCTTGAATTGCCTTGCAAGTATTATTCATTGGGATGTACTGAGATATTCCCATACTACAGTAAACTTAAGCACGAGGCTTTGTGCAATTATAGACCCTATAGTTGCCCATATGCTGGTTCGGAATGCTCTGCTGTTGGGGACATTCCTTTCCTTGTTGCCCATCTGAGGGATGATCATAAGGTGGATATGCACACTGGCTGCACATTTAACCATCGCTATGTGAAATCCAATCCAAGGGAAGTGGAAAATGCCACTTGGATGCTTACTGTGTTCCATTGTTTTGGTCAATATTTCTGCCTTCACTTTGAAGCCTTTCAGCTTGGCATGGCCCCAGTCTATATGGCTTTCCTTCGTTTCATGGGTGATGAGAATGAGGCACGAACCTACAGCTACAGTCTCGAGGTTGGTGGATACGGGCGAAAACTAATATGGGAGGGCACCCCGCGAAGTATTAGAGATAGTCATCGAAAAGTGAGGGACAGCCATGATGGGCTAATCATTCAAAGAAATATGGCTCTTTTCTTCTCTGGTGGGGACAGGAAGGAACTGAAACTAAGAGTTACAGGAAGGATATGGAAGGAACAAAACCCAGATGCTGGAGTCTGCATACCGAACCTGTGTAGCTAA 2865 45.03 MAAAALRSRSSKEVATLTLSRCRHCISNSIHAATNPSSHCINRNKPNDLYLNSPYHLVSFKPVSLRGDFVDNGTQPPDHRRIYQNSTKNLNHKFSKRGCFMSTYGDPPEVWSGDGIVIRGSNSSLNGRGAGGGNSNSGSGGGFASNSNDGCWGGSNLGPNFPTPKEIAKGLDKFVIGQERAKKVLSVGVYNHYKRIYHESLQRPTGDTVNNKADAVDDDKVELEKSNILLMGPTGSGKTLLAKTLARFVNVPFVIADATTLTQAGYVGEDVESILYKLLMVADYNVAAAQQGIVYIDEVDKITKKAESLNISRDVSGEGVQQALLKMLEGTIVNVPEKGARKHPRGENIQIDTKDILFICGGAFIDLEKTISERRQDSSLGFGAPVRANMRAGGVTDAMVTSSLLETVESSDLIAYGLIPEFVGRFPILVSLSALTENQLVQVLTEPKNALGKQYRKMFQMNDVKLHFTENALRLIARKAMSKNTGARGLRSILENLLMDSMYEIPDVRTGENIIDAVIVDEESIGLDRPGSGAKILYGKGALDRYLSGQKVEERKATSQDSEREPEPEGEVEKRRKEPRLSAKKGLLSFPLIYPFSFSLPSLRLPRRNLHQLVKFSNFLLLLMDLDSIECVSSSDGLDEDEIHLHHTLHPYSHSHHHPELSATKPRNGSNNSGITVPTATAPATSVHELLECPVCTNSMYPPIHQCHNGHTLCSTCKTRVHNRCPTCRQELGDIRCLALEKVAESLELPCKYYSLGCTEIFPYYSKLKHEALCNYRPYSCPYAGSECSAVGDIPFLVAHLRDDHKVDMHTGCTFNHRYVKSNPREVENATWMLTVFHCFGQYFCLHFEAFQLGMAPVYMAFLRFMGDENEARTYSYSLEVGGYGRKLIWEGTPRSIRDSHRKVRDSHDGLIIQRNMALFFSGGDRKELKLRVTGRIWKEQNPDAGVCIPNLCS 954
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
5 9465734 9478591 - CcPI632755_05g010610.1 Cco05g1061 178689

Annotation

Select Seq ID Length Analysis Description Start End IPR GO
Cco05g1061 954 NCBIfam ATP-dependent protease ATP-binding subunit ClpX 160 522 IPR004487 GO:0005524(InterPro)|GO:0006457(InterPro)|GO:0051082(InterPro)|GO:0140662(InterPro)
Cco05g1061 954 Gene3D Zinc/RING finger domain, C3HC4 (zinc finger) 746 801 IPR013083 -
Cco05g1061 954 CDD Sina 807 935 - -
Cco05g1061 954 ProSiteProfiles Zinc finger SIAH-type profile. 746 806 IPR013010 GO:0008270(InterPro)
Cco05g1061 954 SUPERFAMILY P-loop containing nucleoside triphosphate hydrolases 161 520 IPR027417 -
Cco05g1061 954 Pfam C-terminal, D2-small domain, of ClpB protein 435 504 IPR019489 -
Cco05g1061 954 FunFam ATP-dependent Clp protease ATP-binding subunit ClpX 434 533 - -
Cco05g1061 954 Pfam E3 ubiquitin-protein ligase sina/sinah, RING finger 693 728 IPR049548 -
Cco05g1061 954 FunFam E3 ubiquitin-protein ligase SINAT3 745 801 - -
Cco05g1061 954 CDD RING-HC_SIAHs 691 729 - -
Cco05g1061 954 SMART AAA_5 224 386 IPR003593 GO:0016887(InterPro)
Cco05g1061 954 Gene3D Apoptosis, Tumor Necrosis Factor Receptor Associated Protein 2; Chain A 803 934 IPR008974 GO:0005515(InterPro)
Cco05g1061 954 Pfam Sina, zinc finger 742 817 - -
Cco05g1061 954 Pfam Sina, TRAF-like domain 837 934 IPR018121 GO:0005737(InterPro)|GO:0006511(InterPro)|GO:0007275(InterPro)
Cco05g1061 954 Pfam AAA domain (Cdc48 subfamily) 224 428 IPR003959 GO:0005524(InterPro)|GO:0016887(InterPro)
Cco05g1061 954 ProSiteProfiles Zinc finger RING-type profile. 693 729 IPR001841 -
Cco05g1061 954 FunFam E3 ubiquitin-protein ligase SINAT3 634 744 - -
Cco05g1061 954 SUPERFAMILY RING/U-box 680 732 - -
Cco05g1061 954 FunFam E3 ubiquitin-protein ligase SINAT5-like 802 934 - -
Cco05g1061 954 MobiDBLite consensus disorder prediction 651 675 - -
Cco05g1061 954 SMART ClpB_D2_small_2 435 527 IPR019489 -
Cco05g1061 954 Gene3D - 434 531 - -
Cco05g1061 954 Gene3D Zinc/RING finger domain, C3HC4 (zinc finger) 655 745 IPR013083 -
Cco05g1061 954 FunFam CLP protease regulatory subunit CLPX3 mitochondrial 155 433 - -
Cco05g1061 954 PANTHER ATP-DEPENDENT CLP PROTEASE ATP-BINDING SUBUNIT CLPX-LIKE, MITOCHONDRIAL-RELATED 21 551 IPR050052 GO:0005524(PANTHER)|GO:0005759(PANTHER)|GO:0016887(PANTHER)|GO:0051603(PANTHER)
Cco05g1061 954 MobiDBLite consensus disorder prediction 550 580 - -
Cco05g1061 954 SUPERFAMILY TRAF domain-like 746 938 - -
Cco05g1061 954 CDD RecA-like_ClpX 162 432 - -
Cco05g1061 954 Gene3D - 157 433 IPR027417 -
       

Pathway

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Cco05g1061 K03544 - - csv:101215939 978.008
       

Dupl-types

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Cco05g1061 Cco-Chr5:9465734 Cco08g0262 Cco-Chr8:4710629 4.30E-182 dispersed
Cco05g1060 Cco-Chr5:9461056 Cco05g1061 Cco-Chr5:9465734 2.20E-194 tandem
       

Syn-Families

Select Gene Event_type S_start S_end Function Ath_gene Identity(%) E-value Score
Cco08g0586 . 77 566 C3H Transcription Factor Family AT2G31510 76.2 1.7e-227 785.4
Cco11g0927 . 25 283 C3H Transcription Factor Family AT2G31510 83.1 3.1e-123 439.1
Cco08g0586 . 60 522 C3H Transcription Factor Family AT2G31770 59.7 4.1e-169 591.7
Cco11g0927 . 25 272 C3H Transcription Factor Family AT2G31770 58.1 1.6e-77 287.3
Cco08g0586 . 60 529 C3H Transcription Factor Family AT2G31760 58.3 6.2e-167 584.3
Cco11g0927 . 25 257 C3H Transcription Factor Family AT2G31760 58.8 5.0e-76 282.3
Cco04g1262 . 8 169 C3H Transcription Factor Family AT5G06490 54.6 1.9e-47 186.0
Cco04g1262 . 8 169 C3H Transcription Factor Family AT5G06490 54.6 1.9e-47 186.0
Cco11g0509 . 1 226 C3H Transcription Factor Family AT3G02290 62.8 5.0e-76 281.2
Cco06g1241 . 68 372 C3H Transcription Factor Family AT1G11020 75.6 2.3e-135 478.8
Cco07g1542 . 62 221 C3H Transcription Factor Family AT1G50440 75.6 3.9e-68 255.0
Cco04g0291 . 153 513 C3H Transcription Factor Family AT5G08750 61.0 8.1e-121 430.6
Cco10g0882 . 26 456 C3H Transcription Factor Family AT3G16090 72.6 1.4e-168 589.7
Cco11g0509 . 1 225 C3H Transcription Factor Family AT5G38895 58.0 4.4e-73 271.9
Cco08g1720 . 16 227 C3H Transcription Factor Family AT1G19310 66.8 1.3e-79 293.1
Cco04g1378 . 40 249 C3H Transcription Factor Family AT1G19310 59.4 5.8e-69 257.7
Cco04g1671 . 9 323 C3H Transcription Factor Family AT2G22120 83.9 2.0e-159 558.9
Cco08g1224 . 73 180 C3H Transcription Factor Family AT5G07040 67.6 3.1e-40 161.8
Cco06g1697 . 30 418 C3H Transcription Factor Family AT1G18470 75.8 5.8e-179 624.0
Cco01g0622 . 165 396 C3H Transcription Factor Family AT1G68200 50.2 4.8e-50 195.3
Cco08g0586 . 60 522 C3H Transcription Factor Family AT2G31770 59.7 4.1e-169 591.7
Cco11g0927 . 25 272 C3H Transcription Factor Family AT2G31770 58.1 1.6e-77 287.3
Cco08g0586 . 60 529 C3H Transcription Factor Family AT2G31760 58.3 6.2e-167 584.3
Cco11g0927 . 25 257 C3H Transcription Factor Family AT2G31760 58.8 5.0e-76 282.3
Cco07g0065 . 25 372 C3H Transcription Factor Family AT2G30580 50.9 5.8e-81 298.1
Cco09g2351 . 122 354 C3H Transcription Factor Family AT5G55970 68.2 3.3e-94 342.0
Cco04g0291 . 153 513 C3H Transcription Factor Family AT5G63780 57.2 1.8e-115 412.9
Cco10g1744 . 1 397 C3H Transcription Factor Family AT3G58030 50.7 8.8e-98 354.4
Cco09g2351 . 124 423 C3H Transcription Factor Family AT4G26580 63.0 7.0e-111 397.5
Cco04g0788 . 86 550 C3H Transcription Factor Family AT5G01960 68.9 2.3e-167 585.5
Cco07g0562 . 1 484 C3H Transcription Factor Family AT5G01960 57.9 1.1e-150 530.0
Cco02g1178 . 105 256 C3H Transcription Factor Family AT2G04240 59.5 5.2e-43 171.0
Cco02g0317 . 1 149 C3H Transcription Factor Family AT2G04240 57.8 2.5e-37 152.1
Cco02g2442 . 1 192 C3H Transcription Factor Family AT5G19430 57.3 4.9e-56 214.9
Cco07g1193 . 130 585 C3H Transcription Factor Family AT5G45290 52.9 4.6e-104 375.6
Cco02g2442 . 40 204 C3H Transcription Factor Family AT5G12310 58.4 8.1e-51 197.6
Cco06g1587 . 171 461 C3H Transcription Factor Family AT5G05810 53.5 9.8e-75 277.7
Cco11g0657 . 53 205 C3H Transcription Factor Family AT5G05830 58.8 3.1e-45 178.7
Cco04g0927 . 67 197 C3H Transcription Factor Family AT5G05830 60.4 3.0e-40 162.2
Cco06g1008 . 30 426 C3H Transcription Factor Family AT4G28890 51.0 9.7e-97 350.9
Cco11g0509 . 1 226 C3H Transcription Factor Family AT5G15790 59.9 4.7e-74 274.6
Cco11g0691 . 86 357 C3H Transcription Factor Family AT3G55530 80.2 5.0e-115 411.0
Cco09g0645 . 27 299 C3H Transcription Factor Family AT1G63900 75.2 2.1e-116 415.6
Cco05g0324 . 10 392 C3H Transcription Factor Family AT2G44580 54.0 1.5e-120 429.9
Cco08g1720 . 25 150 C3H Transcription Factor Family AT1G74990 59.8 9.1e-41 163.3
Cco05g1824 . 3 314 C3H Transcription Factor Family AT5G20910 63.8 5.0e-111 397.9
Cco10g0882 . 144 444 C3H Transcription Factor Family AT1G65040 69.6 3.9e-111 398.3
Cco04g1378 . 41 251 C3H Transcription Factor Family AT2G23780 60.6 1.1e-72 270.0
Cco08g1720 . 6 229 C3H Transcription Factor Family AT2G23780 57.0 6.9e-70 260.8
Cco01g0255 . 1 170 C3H Transcription Factor Family AT1G63840 56.1 1.1e-45 179.9
Cco01g0687 . 18 353 C3H Transcription Factor Family AT1G68070 63.8 1.3e-117 419.9
Cco11g1944 . 4 182 C3H Transcription Factor Family AT1G76410 55.2 2.6e-51 198.7
Cco10g0011 . 1 159 C3H Transcription Factor Family AT1G76410 56.3 4.8e-45 177.9
Cco08g1449 . 1 410 C3H Transcription Factor Family AT1G80400 54.0 5.9e-112 401.4
Cco10g0011 . 1 150 C3H Transcription Factor Family AT2G17450 57.5 5.2e-39 157.9
Cco08g0586 . 77 566 C3H Transcription Factor Family AT2G31510 76.2 1.7e-227 785.4
Cco11g0927 . 25 283 C3H Transcription Factor Family AT2G31510 83.1 3.1e-123 439.1
Cco04g1262 . 7 168 C3H Transcription Factor Family AT2G35910 63.4 3.9e-54 208.4
Cco10g1805 . 15 161 C3H Transcription Factor Family AT2G35910 51.0 4.9e-41 164.9
Cco04g0173 . 1 307 C3H Transcription Factor Family AT2G41980 80.5 2.2e-151 531.9
Cco05g1060 . 61 318 C3H Transcription Factor Family AT2G41980 80.6 1.5e-128 456.1
Cco05g1061 . 684 941 C3H Transcription Factor Family AT2G41980 80.6 1.5e-128 456.1
Cco02g2532 . 139 428 C3H Transcription Factor Family AT2G41980 73.4 2.4e-126 448.7
Cco01g0811 . 48 305 C3H Transcription Factor Family AT2G41980 78.7 2.7e-125 445.3
Cco06g0128 . 43 301 C3H Transcription Factor Family AT2G41980 75.3 2.5e-123 438.7
Cco05g2942 . 111 359 C3H Transcription Factor Family AT2G41980 79.1 1.2e-120 429.9
Cco05g0640 . 119 393 C3H Transcription Factor Family AT3G06140 63.1 2.6e-95 345.9
Cco10g2019 . 33 329 C3H Transcription Factor Family AT3G09770 58.9 7.9e-86 314.3
Cco06g1898 . 58 352 C3H Transcription Factor Family AT3G47990 72.1 3.7e-127 451.4
Cco01g1455 . 58 349 C3H Transcription Factor Family AT3G47990 69.8 8.7e-121 430.3
Cco11g1944 . 4 186 C3H Transcription Factor Family AT1G20823 55.7 2.5e-52 202.2
Cco10g0011 . 1 159 C3H Transcription Factor Family AT1G20823 58.0 1.2e-46 183.3
Cco09g1986 . 36 404 C3H Transcription Factor Family AT3G18930 54.4 3.1e-84 309.3
Cco10g0048 . 20 235 C3H Transcription Factor Family AT5G66070 74.5 1.6e-74 276.2
Cco10g2064 . 3 273 C3H Transcription Factor Family AT5G02750 53.0 1.4e-67 253.4
Cco06g1697 . 34 470 C3H Transcription Factor Family AT1G73950 68.5 6.6e-170 594.0
Cco08g0239 . 1 160 C3H Transcription Factor Family AT1G33480 50.6 9.5e-39 157.5
Cco01g0687 . 15 251 C3H Transcription Factor Family AT2G01735 60.4 1.2e-73 273.5
Cco10g0354 . 60 269 C3H Transcription Factor Family AT2G01735 53.3 4.3e-52 201.8
       

Syn-Orthogroups

Select Orthogroup Bda Bhi Blo Bma Bpe Cam Car Cco Cec Chy Cla Clacu Cma Cme Cmetu Cmo Cmu Cone Cpe Cre Csa HCH Hepe Lac Lcy Lsi Mch Sed Tan Vvi Total
OG0001359 1 5 2 3 1 2 5 2 1 2 2 2 4 2 2 4 2 2 4 2 2 2 2 2 2 3 2 3 4 3 75