Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Cco05g1064 ATGATGGATGAGAAAGAGGTTTCCAATTCAATAACATTCATATCTGAAGAGAAAATTGACAGTTTATCTCCTATGTATTTCGGTGTTTCTTGCGCATTTTTTGCTCTTCGACTCTTGTCAACCTCTGATTGCAAAGACGAGAAATGGTCTGAAGTTCGGGAAAAGATGCTTCAAGGTAGCGCCCAACTCTTGGGGTTGCTAATATGGAGTGCTCAAAGGGAGGTGGATAGGCAAAAGCCCAATCTTCATCATAAGCTTGAGGCTGCTGAGAGAAAGATAGGAGAGTTGAAAAGAATCAGACATGAAGATGCTAAAGCTAATGAAAAAGTTGTTTGCATTTTTGCTGCTCAGGAGCAACGGTGGTTGATTGAAAGGAAGAAGCTTCGTCAGCACATTGGAGCTTTAATGAACGATGCAAGGCTACTCGAAAAGAAGGAAGAAGTTATTTCTGAACTGAATGAAAAGTTGAAGGAGATGGAGATGACACTAGAGTCTAAGGAAAAAAGCTTGGAGGAAGAGATTAAAAAAGGAAGTGACTTGGAAGAAAGACTGTCCAAGGCCGAAAATGTAGTAGAAGAATTGAGAGAAACTGCTAAACGTGAGGCCCAAGAGCATTCCTCAGAACTCTGGAAGCACAAAACAGCCTTCATTGAGCTGGTCTCAAACCAAAGGCAACTTGAAGCTGAGATGGCCCGAGCAGTTAGGCAAGTTGAAGCATCAAAAGGAGAGCTTGATTCAGTTTTAGAGCAAAAGGAGGAGTCCGTAATGTTGGTACAGAAACTATCTGCTGAGATTGTTAAAATGCGCAAGGATTTAGAACAGAAAGACAAGATCTTGTCAGCAATGCTGAGAAAATCCAAGCTGGATACAGCACAGAAGCAAATGCTCCTTAAGGAGGTTAAGCTATCCAAGGCTAGGAGGAAGCAAGCAGAATTAGAAGCTGAAAGGTGGAAGACAATTTCAGAATCAAGACATGAAAGACAGTCATTGAGAAGCATGTTATCCAATCAGGTCAATTCAGGATATGATGTTCCTACAAGTGCTGGGGACAAGCATTCAAATACAAGTGCATTCTCAAGCACTGGGAAGACCATATCTAAACCAACTGATATTTATATTGATTACAATCATCCAGAATCCATTCAGTCAAATGACTTTCCTCCCCTGCCTGAATCAGAATGTCTTTCCCCTGAAAGAAATGATGACTCAGGGAGAATGATTGATGTCCAGCAGATGGAAGAGTTGGTATGCTCTGAGGCAGAAAAGTATGTATTAATACTTCAGCAGAGACATGACCTAGAAATAGATGCATTTGCAGAGCAAATGGGGATGAAAGATGAAAAATTAGAAGTTTTTCACTGGCAGATGCTCAACTTGGAACTTGAATCAAAACGGCTTCAGTCACATCTTGCTGGACAGAATCAAGAGATTTTGCAGCTTAGGCATGAGAATATGAAATTAAAAGCTGTGTCAATGGAGAGAGAAGAGGAATTAGCTTCCTTGAAAGGCCAACTGGCCTCACAGTTCAACTCTCAAAGGTACCAGCCTACGAAATGGGTGCCGGATGAAAACAACGGCACGTGGTCAGATGTCAAGATTATAAAGATAAAACCAGGAGAAGAAGAGCAACAGAGAAATAAAGATTCTATTGGAACAATAAAGGAGGATGCTGTTGAGAGAGAAGAGACTGCTCGCTCAAACCTTGTTGAGAACCGAAATCCGTTGATACAATCTCCAGGTACCGAATTTGAAGATGAAAAAGAAATTGCTTGTCACAGTCCTATTCAAGAAGCAAGCACAAATAGTACACAGGGGATTGATAATGCCGAGCAGTTGGCATCGATCGGGCAGCAGTTTGGAAGAACTTATAGTACTCAATGGAGGATGGATATTCATGCTCTAGGAGTGTCTTACAAAATCAAAAGGCTGAAGCAGCAATTTCTTTTGCTTGAGAGGCTTGTCGGAAAACAAGAAACTGCTCGGAATTCCGAAAATGAGGATAATGGACAAGTTGGCATTAGAGAGTTTCTTTTGTTTCTGACACTGCTGAATAAACAAGTAAACAGATATAGTTCTTTGCAGGAGAAAACTGATGAACTCTGCCAAAGGATGCATGATTATGAAGCGAGTGTAAAATGTGGAGAGTCAAAAGTAGTTAGAACGAAAGGCAAAACCAAAGCGCTGGAGAACTTCCTTGAACAGACATTTCAACTACAAAGATATGTTGTCTTAACGGGACAGAAATGGATGGAAATTCAATTCAAGATCAGCCTGGAATTCACCAAGGTTGCTGATGAACTTCAAAAGTCCGGTAGCTTCGACGTTAAGCGCTTTGCCAGTAGTGTTAAAACTCTCTTCCAAGAAGTTCAAAGAGGTCTAGAAGTTCGAATAACTCGAATTATTGGAGATCTAGAAGGAACCTTGGCATGCGAGGGGGAAAATCCGAGCTCCACGCCACCAAAGTTGTCTCTGTTTTCTCTGCCAAGACAGCCGCCGGAGCCACCGGGGATGGTGACGCCGCCGCTTCACGCGTCAATTTCTGTGCCGTTTCAATGGGAGGAGGCGCCGGGGAAACCGAGGCCGTTCGGGATTATTGAACCGAATTCAAAGCCCAAAAGTGCAAGATCTTTGGATCTGCCGCCGAGGATGTTCGCCGATGCTAAAGTGGCTCATTTTTCCCCTCCGACGACCGCCGTGGACGACCCCATTTCCTGCCGAGACCTGTCTTCTAGTTTGTCGTTCAGGTTCCCCGACAGTTGGGCGGAGACGGCGACCGCTACGAGGGAGGGCAAGGATGGTAAATATGTTGGGTCTAGGCGGTGGATGAGCTTCAGGAAGAAAAAGGAGATTCCGATGTGCGGGTCTGAAATATCTCTCTCGGGCAGCGATGCTGACGACGGCGGCCATAATGTTGGGAGTGGCGACGGAGAAACGAGGGTGAAGATCACAAGGTTTAGGAGTAGAAGAAGCTTTTTTAGGAAACCGAATTCAAAGTCGCACTTGATTGCAAGTATTTATGGGAGCTTGAAGCAAGTCATTCCATGGAAACGCAAGCAAAATGAAATGAGAAAAGCATCACAATGA 3084 43.58 MMDEKEVSNSITFISEEKIDSLSPMYFGVSCAFFALRLLSTSDCKDEKWSEVREKMLQGSAQLLGLLIWSAQREVDRQKPNLHHKLEAAERKIGELKRIRHEDAKANEKVVCIFAAQEQRWLIERKKLRQHIGALMNDARLLEKKEEVISELNEKLKEMEMTLESKEKSLEEEIKKGSDLEERLSKAENVVEELRETAKREAQEHSSELWKHKTAFIELVSNQRQLEAEMARAVRQVEASKGELDSVLEQKEESVMLVQKLSAEIVKMRKDLEQKDKILSAMLRKSKLDTAQKQMLLKEVKLSKARRKQAELEAERWKTISESRHERQSLRSMLSNQVNSGYDVPTSAGDKHSNTSAFSSTGKTISKPTDIYIDYNHPESIQSNDFPPLPESECLSPERNDDSGRMIDVQQMEELVCSEAEKYVLILQQRHDLEIDAFAEQMGMKDEKLEVFHWQMLNLELESKRLQSHLAGQNQEILQLRHENMKLKAVSMEREEELASLKGQLASQFNSQRYQPTKWVPDENNGTWSDVKIIKIKPGEEEQQRNKDSIGTIKEDAVEREETARSNLVENRNPLIQSPGTEFEDEKEIACHSPIQEASTNSTQGIDNAEQLASIGQQFGRTYSTQWRMDIHALGVSYKIKRLKQQFLLLERLVGKQETARNSENEDNGQVGIREFLLFLTLLNKQVNRYSSLQEKTDELCQRMHDYEASVKCGESKVVRTKGKTKALENFLEQTFQLQRYVVLTGQKWMEIQFKISLEFTKVADELQKSGSFDVKRFASSVKTLFQEVQRGLEVRITRIIGDLEGTLACEGENPSSTPPKLSLFSLPRQPPEPPGMVTPPLHASISVPFQWEEAPGKPRPFGIIEPNSKPKSARSLDLPPRMFADAKVAHFSPPTTAVDDPISCRDLSSSLSFRFPDSWAETATATREGKDGKYVGSRRWMSFRKKKEIPMCGSEISLSGSDADDGGHNVGSGDGETRVKITRFRSRRSFFRKPNSKSHLIASIYGSLKQVIPWKRKQNEMRKASQ 1027
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
5 9510353 9515256 + CcPI632755_05g010640.1 Cco05g1064 178692

Annotation

Select Seq ID Length Analysis Description Start End IPR GO
Cco05g1064 1027 Coils Coil 456 476 - -
Cco05g1064 1027 Coils Coil 223 243 - -
Cco05g1064 1027 Coils Coil 288 315 - -
Cco05g1064 1027 ProSiteProfiles Prokaryotic membrane lipoprotein lipid attachment site profile. 1 31 - -
Cco05g1064 1027 Coils Coil 125 204 - -
Cco05g1064 1027 Coils Coil 258 278 - -
Cco05g1064 1027 PANTHER RIBONUCLEASE P PROTEIN SUBUNIT P38-LIKE PROTEIN 15 813 - -
       

Pathway

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Cco05g1064 - - - - 0.0
       

Dupl-types

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Cco05g1064 Cco-Chr5:9510353 Cco06g0265 Cco-Chr6:2874714 6.80E-08 dispersed
Cco01g0039 Cco-Chr1:278503 Cco05g1064 Cco-Chr5:9510353 1.80E-17 wgd
Cco05g0093 Cco-Chr5:796343 Cco05g1064 Cco-Chr5:9510353 1.70E-11 wgd
       

Deco-Alignment

Select Vvi1 Blo1 Blo2 Bda1 Bda2 Bpe1 Bpe2 Bma1 Bma2 Cmo1 Cmo2 Cma1 Cma2 Car1 Car2 Sed1 Cpe1 Cpe2 Bhi1 Tan1 Cmetu1 Lac1 Hepe1 Mch1 Lcy1 Cla1 Cam1 Cec1 Cco1 Clacu1 Cmu1 Cre1 Cone1 Cone2 Cone3 Cone4 Lsi1 Csa1 Chy1 Cme1 Blo3 Blo4 Bda3 Bda4 Bpe3 Bpe4 Bma3 Bma4 Sed2 Cmo3 Cmo4 Cma3 Cma4 Car3 Car4 Cpe3 Cpe4 Bhi2 Tan2 Cmetu2 Lac2 Hepe2 Mch2 Lcy2 Cla2 Cam2 Cec2 Cco2 Clacu2 Cmu2 Cre2 Lsi2 Csa2 Chy2 Cme2
Vvi16g1033 . . . . Bpe03g00192 . . . Cmo16g00049 . . . . . Sed01g3487 . Cpe14g00034 Bhi01g01497 Tan01g0087 Cmetu06g0291 . Hepe07g0055 Mch10g0053 . . . . . . . . Cone1ag0990 Cone5ag0694 . . . . . Cme06g01148 . . Bda06g00787 . . . . . . . . . . Car16g00040 Car18g01241 . . . . . . . . . Cla05g00974 Cam05g1066 Cec05g1072 Cco05g1064 Clacu05g1058 Cmu05g1009 Cre05g1086 . Csa03g01979 . .
       

Syn-Orthogroups

Select Orthogroup Bda Bhi Blo Bma Bpe Cam Car Cco Cec Chy Cla Clacu Cma Cme Cmetu Cmo Cmu Cone Cpe Cre Csa HCH Hepe Lac Lcy Lsi Mch Sed Tan Vvi Total
OG0004185 2 2 3 2 2 1 2 1 1 1 1 1 2 1 1 2 1 1 2 1 1 1 1 1 1 1 1 3 2 1 43