Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Cco05g1065 ATGGAGTCTAACACCAAACTAAATCCTCAAAGCCTTCAGAATCCACTGGACTTTGACTGGCTACAAGAAGATCTCTTCCCATTCCACAATATTTTGGAGTTGGAGACTGAAATTTGGACAAGAATGATAAAATTAGAAGATGATGAAAGGGGAATTAGAGAGATGATTGAAAGATCAGAGTTTTCATCAAGTTGGAAAGAAGCAGAAGAGGAAAAGAGATTGAGATTATTGAAGAATGGGAGGAGGAGAAAAAGTAGTTCAGTTTTGGGATTGGAAGAGATTCAAAAGCACTTTCATATACCAATATCAGAGGCAGCAAAACAGATGAATGTTGGGTTGACAGTGCTTAAAAGAAGGTGTAAACAACTTAATAGAACACTCAAGAGCTTGAATTCTCTCATTCAAGATGTTAAGGCATGTAATATGACTTTATATACATATGCCACGTGGATTCAACATCTGTCTTGTTTGGAGATGGGGTTAACAAATGAGGTAAAAGGGTTGGAGGAGCACAAGAGGCTGATGGAGGAATTGCCAGATTTGGACCTCACACACACAACCAAAAGGCTGAGGCAAGCTTGTTTCAAAGCCAATTACAAGAAGAAGAGAAGAATTATTAGGTCCAATAATATTGCTACTCTTCATCACTAA 651 37.94 MESNTKLNPQSLQNPLDFDWLQEDLFPFHNILELETEIWTRMIKLEDDERGIREMIERSEFSSSWKEAEEEKRLRLLKNGRRRKSSSVLGLEEIQKHFHIPISEAAKQMNVGLTVLKRRCKQLNRTLKSLNSLIQDVKACNMTLYTYATWIQHLSCLEMGLTNEVKGLEEHKRLMEELPDLDLTHTTKRLRQACFKANYKKKRRIIRSNNIATLHH 216
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
5 9516016 9518224 - CcPI632755_05g010650.1 Cco05g1065 178693

Annotation

Select Seq ID Length Analysis Description Start End IPR GO
Cco05g1065 216 PANTHER PROTEIN RKD4 33 206 IPR044607 GO:0003700(InterPro)
Cco05g1065 216 Coils Coil 113 133 - -
Cco05g1065 216 Pfam RWP-RK domain 90 124 IPR003035 -
       

Pathway

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Cco05g1065 - - - - 0.0
       

Dupl-types

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Cco05g1065 Cco-Chr5:9516016 Cco06g1823 Cco-Chr6:28533512 2.40E-19 dispersed
       

Deco-Alignment

Select Vvi1 Blo1 Blo2 Bda1 Bda2 Bpe1 Bpe2 Bma1 Bma2 Cmo1 Cmo2 Cma1 Cma2 Car1 Car2 Sed1 Cpe1 Cpe2 Bhi1 Tan1 Cmetu1 Lac1 Hepe1 Mch1 Lcy1 Cla1 Cam1 Cec1 Cco1 Clacu1 Cmu1 Cre1 Cone1 Cone2 Cone3 Cone4 Lsi1 Csa1 Chy1 Cme1 Blo3 Blo4 Bda3 Bda4 Bpe3 Bpe4 Bma3 Bma4 Sed2 Cmo3 Cmo4 Cma3 Cma4 Car3 Car4 Cpe3 Cpe4 Bhi2 Tan2 Cmetu2 Lac2 Hepe2 Mch2 Lcy2 Cla2 Cam2 Cec2 Cco2 Clacu2 Cmu2 Cre2 Lsi2 Csa2 Chy2 Cme2
Vvi16g1032 . . . . . . . . . . . . . . Sed05g1782 . . Bhi01g01498 Tan01g0086 Cmetu03g1368 . Hepe07g0054 Mch10g0052 . . . . . . . . . . Cone14ag0006 . . . . Cme06g01149 . . . . . Bpe12g00349 Bma08g00389 . . . . . . . Car18g01240 . . . . . . . . . Cla05g00975 Cam05g1067 Cec05g1073 Cco05g1065 Clacu05g1059 Cmu05g1010 Cre05g1087 . Csa03g01978 Chy06g01193 .
       

Syn-Orthogroups

Select Orthogroup Bda Bhi Blo Bma Bpe Cam Car Cco Cec Chy Cla Clacu Cma Cme Cmetu Cmo Cmu Cone Cpe Cre Csa HCH Hepe Lac Lcy Lsi Mch Sed Tan Vvi Total
OG0002327 1 2 1 3 2 2 3 2 2 4 1 2 2 4 2 2 2 2 2 2 1 2 2 2 2 1 2 3 2 2 62
       

Regulatory proteins

Select Gene Hmm_acc Hmm_name Score E-value Regulatory Factors Family
59282 PF02042 RWP-RK 1.70E-12 No_clan Cco TF