Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Cco05g1071 ATGGAAAAGTTTGGAGATGAGGATGAGGCAGAGGTTTTGGGGTCGGACCCCACTTGGGGATGCAAAATGGCTTTGCTGAGTCCTCGATTGCATAGATTCCGGCTAACCAAGCTCCACCATACCTCCGCCTCCAAACCCACCAAAACAACTAAGCTCACTCTCACAAGAAAAACCAGATGCTGCTCTGCCATAGCTATTGATGCTCCATCTTCTTTAACAGATGCTGCAGGAATCAGATGGGGTTCCACTACTTTGCAAGGCTTGCGAGAAGAAATGGAAGACGATGCTGTTGTGCGGTCTGATGGTTTCAATGGCTTCTTGTTTGCTGCAGTGTTCGATGGCCATGGTGGCTATTCCTCTGTCAAGTTCCTCAGGGAGGAGCTGTACAAAGACTGCGTAGCAGCTTTACAAGGCGGCCTGCTATTGAATGGAGGGGATTTTGAAGAGATAAAATCGGCGTTGGAGAAAGCTTTTGATGATACTGATAAGAGATTACTCCTTTTGCTTGAGGCAGCTGGGGAGGAAGATGAATCTGGTTCCACTGCCACTGTTGCATTCATTCGAAATGATGTGCTGTTCATTTCACATATTGGTGACTCTTGTATTGTATTATCTCGTTCTGGAGGAGCACAGGTGTTGACTAGTTCTCATCGGCCTTATGGAAATAACAGCACTTCACTACAAGAAATTAGAAGAATTAGAGAAGCAGGTGGATGGATTGTTAATGGGAGAATCTGCGGGGACATCTCTGTATCGCGTGCATTTGGTGACATCCGATTCAAGACGAAGAAAATCGAGATGCTACAAAAAGGAGTTGAAGAAGGGAGATGGTCAGAAAAATTTATTTCTCGTGTACAGTTCAATGGAGATTTGGTTACTGCATCACCAGAAATTTTCCAAGTTACGCTCGGATCAAATGTTGAATTTATACTGATGGCATCAGATGGCCTATGGGATTACATGAATAGCTCTGATGCGGTTATGTTTGTTCGGAATGAACTTCGACAGCATGGCGATGTTCAGCTAGCATGTGAAGCCCTCGCTCAAGCAGCCTTGGATAAAGGGTCACAAGACAATATCAGCATTATCATGGCTGATTTAGGGCGGACAGATTGGCAAAATTTGCCCCTTAAGCAAGACAATGTCATATTTGAGCTGGCTCAAGCTTTCGCTATGATCGGACTTGTTTCTTTTGGTATTTGGTGGGCATCCTCTAGTTTCTCTCTTTAA 1230 44.72 MEKFGDEDEAEVLGSDPTWGCKMALLSPRLHRFRLTKLHHTSASKPTKTTKLTLTRKTRCCSAIAIDAPSSLTDAAGIRWGSTTLQGLREEMEDDAVVRSDGFNGFLFAAVFDGHGGYSSVKFLREELYKDCVAALQGGLLLNGGDFEEIKSALEKAFDDTDKRLLLLLEAAGEEDESGSTATVAFIRNDVLFISHIGDSCIVLSRSGGAQVLTSSHRPYGNNSTSLQEIRRIREAGGWIVNGRICGDISVSRAFGDIRFKTKKIEMLQKGVEEGRWSEKFISRVQFNGDLVTASPEIFQVTLGSNVEFILMASDGLWDYMNSSDAVMFVRNELRQHGDVQLACEALAQAALDKGSQDNISIIMADLGRTDWQNLPLKQDNVIFELAQAFAMIGLVSFGIWWASSSFSL 409
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
5 9551103 9554888 + CcPI632755_05g010710.1 Cco05g1071 178699
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Cco05g1071 409 CDD PP2Cc 78 367 IPR001932 -
Cco05g1071 409 ProSiteProfiles PPM-type phosphatase domain profile. 79 367 IPR001932 -
Cco05g1071 409 PANTHER PROTEIN PHOSPHATASE 2C 69 366 IPR015655 GO:0004722(InterPro)|GO:0006470(InterPro)|GO:0006470(PANTHER)
Cco05g1071 409 FunFam Protein phosphatase 2C 57 78 374 - -
Cco05g1071 409 SUPERFAMILY PP2C-like 76 368 IPR036457 -
Cco05g1071 409 ProSitePatterns PPM-type phosphatase domain signature. 108 116 IPR000222 GO:0043169(InterPro)
Cco05g1071 409 SMART PP2C_4 69 365 IPR001932 -
Cco05g1071 409 Gene3D - 78 373 IPR036457 -
Cco05g1071 409 Pfam Protein phosphatase 2C 81 360 IPR001932 -
       

Duplication type information

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Cco05g1071 Cco-Chr5:9551103 Cco05g1832 Cco-Chr5:27225870 4.00E-28 dispersed
Cco05g1071 Cco-Chr5:9551103 Cco02g0433 Cco-Chr2:3904189 7.40E-14 transposed
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Cco05g1071 K04457 - csv:101218076 684.1