Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Cco05g1081 ATGGGGGTTTCATCAGAGACCAAGTTATTGCAGAACCTCATACTCTACGCTGCCAGTGCTGCTTTAAGTTGCTTGGTATTATTCGCAGGTCTTCGCCACCTTGACCCCAACCGCGAGGCTTCAAAGAAAGCGCTCCAGCACAAGAAGGAGATAGCCAAACGCCTCGGCCGCCCCTTCATTCAGACTAATCCTTACGAGGACGTAATTGCCTGTGATGTTATAAATCCTGATCACATTGATGTCGAATTTGACTCAATTGGAGGATTGGAGACTATCAAACAAGCACTATATGAACTAGTGATACTTCCTCTGCGGAGACCTGAGTTATTTTCACACGGGAAGCTTTTGGGTCCTCAGAAAGGCGTATTGCTTTATGGGCCACCTGGTACAGGAAAAACCATGCTTGCAAAAGCTATTGCAAGGGAGTCTGGGGCAGTTTTTATCAATGTTAGGATTTCAAATCTGATGAGCAAGTGGTTTGGTGATGCACAGAAGCTTGTGGCTGCTGTGTTTAGCTTGGCTCATAAACTTCAGCCTTCTATTATTTTTATCGATGAGGTTGATAGTTTCTTGAGTCAACGGCGCTCTAGTGATCATGAAGCTTTATCAAACATGAAAACTGAGTTCATGGCCTTATGGGATGGATTTACTACAGATCAGAACGCACGTGTTATGGTCCTTGCTGCTACCAATCGTCCATCAGAACTTGATGAAGCAATTCTAAGAAGACTCCCTCAGGCTTTTGAAATTGGGATACCCAACAAAAGGGAGAGGGTCGAGATACTAAAGGTGATTCTGAAGGGTGAGAGGGTCGAAGACGACATTGACTATCATCAAATAGCTAGCTTATGCGAGGGGTATACTGGTTCAGATCTTCTCGATCTCTGCAAGAAAGCTGCATATTACCCAATCAGGGATCTATTGGATCAAGAAAAGACTGGAAAACAGTCTAGTTCTCCGAGGCCTCTATCACAGTCAGATTTGGAGACTGCTTTCCTCTCATCAAGGAAGACGAAGGTTGTAGCGAAAGAATATGCTGGATTAGGGTCGCATCAGACAGAGCCCAGCGATCCTCGGATTCAAGCAGTTTTAAACGAGCTCTCTAAGTTTGGCATTTCCCCATCAAATGTTGGATCAGAAGAAGACGACCCGTGA 1155 44.94 MGVSSETKLLQNLILYAASAALSCLVLFAGLRHLDPNREASKKALQHKKEIAKRLGRPFIQTNPYEDVIACDVINPDHIDVEFDSIGGLETIKQALYELVILPLRRPELFSHGKLLGPQKGVLLYGPPGTGKTMLAKAIARESGAVFINVRISNLMSKWFGDAQKLVAAVFSLAHKLQPSIIFIDEVDSFLSQRRSSDHEALSNMKTEFMALWDGFTTDQNARVMVLAATNRPSELDEAILRRLPQAFEIGIPNKRERVEILKVILKGERVEDDIDYHQIASLCEGYTGSDLLDLCKKAAYYPIRDLLDQEKTGKQSSSPRPLSQSDLETAFLSSRKTKVVAKEYAGLGSHQTEPSDPRIQAVLNELSKFGISPSNVGSEEDDP 384
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
5 9600814 9604687 - CcPI632755_05g010810.1 Cco05g1081 178709

Annotation

Select Seq ID Length Analysis Description Start End IPR GO
Cco05g1081 384 FunFam ATPase family AAA domain-containing protein 1 80 257 - -
Cco05g1081 384 ProSitePatterns AAA-protein family signature. 224 243 IPR003960 GO:0005524(InterPro)|GO:0016887(InterPro)
Cco05g1081 384 Gene3D - 80 337 IPR027417 -
Cco05g1081 384 SMART AAA_5 118 254 IPR003593 GO:0016887(InterPro)
Cco05g1081 384 PANTHER AAA ATPASE, PUTATIVE (AFU_ORTHOLOGUE AFUA_2G12920)-RELATED-RELATED 27 331 IPR051701 GO:0005741(PANTHER)
Cco05g1081 384 Pfam ATPase family associated with various cellular activities (AAA) 122 250 IPR003959 GO:0005524(InterPro)|GO:0016887(InterPro)
Cco05g1081 384 Gene3D - 253 333 - -
Cco05g1081 384 Pfam AAA+ lid domain 274 310 IPR041569 -
Cco05g1081 384 CDD RecA-like_ATAD1 85 250 - -
Cco05g1081 384 SUPERFAMILY P-loop containing nucleoside triphosphate hydrolases 81 310 IPR027417 -
       

Pathway

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Cco05g1081 K22530 - - csv:101219583 718.383
       

Dupl-types

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Cco05g1081 Cco-Chr5:9600814 Cco09g0570 Cco-Chr9:5005112 2.80E-79 dispersed
Cco04g1951 Cco-Chr4:33819785 Cco05g1081 Cco-Chr5:9600814 1.70E-32 transposed
Cco01g0025 Cco-Chr1:148469 Cco05g1081 Cco-Chr5:9600814 8.60E-177 wgd
       

Deco-Alignment

Select Vvi1 Blo1 Blo2 Bda1 Bda2 Bpe1 Bpe2 Bma1 Bma2 Cmo1 Cmo2 Cma1 Cma2 Car1 Car2 Sed1 Cpe1 Cpe2 Bhi1 Tan1 Cmetu1 Lac1 Hepe1 Mch1 Lcy1 Cla1 Cam1 Cec1 Cco1 Clacu1 Cmu1 Cre1 Cone1 Cone2 Cone3 Cone4 Lsi1 Csa1 Chy1 Cme1 Blo3 Blo4 Bda3 Bda4 Bpe3 Bpe4 Bma3 Bma4 Sed2 Cmo3 Cmo4 Cma3 Cma4 Car3 Car4 Cpe3 Cpe4 Bhi2 Tan2 Cmetu2 Lac2 Hepe2 Mch2 Lcy2 Cla2 Cam2 Cec2 Cco2 Clacu2 Cmu2 Cre2 Lsi2 Csa2 Chy2 Cme2
Vvi16g994 Blo06g01054 Blo15g00077 . Bda07g01950 . Bpe07g01027 . Bma14g02021 Cmo16g00035 Cmo18g01364 Cma02g01138 Cma15g01011 Car02g00942 Car15g00945 . Cpe05g00585 Cpe14g00023 Bhi01g01520 . . . . Mch10g0036 . Cla01g00024 . . . . . . . . . . . . . Cme06g01170 . Blo09g00009 . Bda15g00794 . Bpe12g00340 . Bma12g01222 . Cmo02g01169 Cmo15g01074 Cma16g00030 Cma18g01333 Car16g00027 Car18g01248 Cpe09g00014 Cpe13g00326 Bhi12g00680 . . Lac11g0112 Hepe06g0815 . Lcy12g0093 Cla05g00988 Cam05g1079 Cec05g1087 Cco05g1081 Clacu05g1073 Cmu05g1023 Cre05g1097 Lsi09g00005 Csa03g01964 Chy06g01176 .
       

Syn-Orthogroups

Select Orthogroup Bda Bhi Blo Bma Bpe Cam Car Cco Cec Chy Cla Clacu Cma Cme Cmetu Cmo Cmu Cone Cpe Cre Csa HCH Hepe Lac Lcy Lsi Mch Sed Tan Vvi Total
OG0002509 1 2 1 1 1 2 4 1 1 2 1 2 3 2 2 4 2 1 4 2 2 2 2 2 2 1 2 3 2 1 58