Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Cco05g1082 ATGAAGTCTCTTAATTTGGGTTCGCCATACAGATGGCAAAACGACTGTCCCCAAGTCAAAAGTTTTGAATTTTCATCAGAAACCATACGTTACCTGAATCAGATTGGATTGAAGAGTTTGGTTATTCAAATGAGGAACACAAACATAGAAGAAGTGCAGGAAATTGAGACTGCTGAAAGTATAGACGAAGAGAAGACTCGTGATGAGGCAGATGATGTAAAAAGAATTGCACCTTGGACTAGACAAATTACAATTCGGGGTGTTATTGCAAGCATAGCAATAGGAATTATGTACAGTGTAATAGTGATGAAGCTTAATCTTACAACAGGTTTGGTCCCAAATTTGAACGTCTCTGCTGCTCTGATAGCATTTGTTTTTATAAAGACATGGACTAAGTTGCTTGAGAAAGCTGGAATTGTATCCACTCCCTTTACACGACAGGAAAATAGTGTCATTCAGACATGTGCTGTGGCTTGTTATAGCATTGCTGTTGGAGGCGGCTTTGGATCCTACTTGTTTGGTTTGAGCAGGAAGACATATGAGCAAGCAGGCGTGGACACGGAAGGAAATGCTCCTGGAAGCACCAAAGAACTTGGAATTGGTTGGATCACTGCCTTCCTTTCTGTCAGTAGTTTTGTTGGACTTCTTGCCTTGGTTCCCCTTAGAAAGATCATGATTCTAGACTATAAATTGTCTTATCCAAGTGGCACTGCAACTGCTGTTCTCATTAATGGTTTCCACACGCCAAAAGGAGACAAGATGGCGAAGAAGCAGGTTCGTGGGTTCATGAAATACTTTTCATTTAGTTTTCTCTGGGCACTATTCCAATGGTTTTATTCTGGAGGAGAGAAATGTGGATTTTCACAGTTTCCTACATTTGGATTGAAAGCTTGGAAAGATTCGTTTTACTTTGATTTCAGCTTGACCTATATTGGAGCAGGGATGATATGCTCTCATCTTGTGAATTTATCATTGCTTCTCGGTGCAATTCTTTCTTGGGGCATAATGTGGCCCTTAATGAAGGGACTTAAAGGGGAGTGGTATCCTGGATCTCTTCCAGAGAGCAGTATGAAAAGCCTCAATGGTTACAAGGTATTTGTATCAATTTCTTTGATACTTGGAGATGGGCTTTATCATTTCCTCAAGATTCTGTATTTCACTGGCTCAAGCATGTATGCAAAAGCAACCAACAAGAAGCTGAAAACATTCCCGGATGATTCAATCCAGACTTTTGATGATCATCGACGAAATGAAGTGTTCTTAAGAGATGGTATTCCAATATGGGTGGCGATCACAGGCTACATCTTCTTCTCCATTGTGTCTATCATTGTGATCCCAATCATGTTCCCGGAGGTCAAGTGGTACTACATAGTTGTTGCCTATACTTTGGCGCCGTCTCTTAGTTTTTGCAATGCATATGGCGCGGGTCTAACTGATATGAATATGGCTTATAACTACGGGAAAGTGGCTCTATTTGTGCTTGCTGCCATGGCTGGTAAAAATGATGGTGTAGTTGCAGGACTTGTGGGTTGTGGTCTGATCAAGTCTATTGTTTCCATCTCCTCTGATTTGATGCATGATTTCAAGACTGGCCATCTCACACTTACATCTCCAAGAGCCATGCTTTTAAGCCAAGCTATTGGTACAGCCATAGGCTGCATTGTAGCTCCTCTCACATTCTTTATGTTCTACAAGGCTTTCGATCTCGCCAACCCAGATCGTGAATACAAGGTCCCATATGCCATCATATATCGAAACATGGCTATCCTAGGAGTTGAAGGTTTCTCAGCTCTGCCCCAGCATTGCTTGCAGTTGTGTTATGGGTTCTTTAGCTTTGCCATTGTAGCCAACTTGCTGAGAGATCTTACTCCTGAAAAATTTGGTAAATGGATCCCACTGCCAATGGCCATGGCCGTGCCTTTTCTCGTTGGGGCTTATTTTGCAATCGATATGTGCGTGGGGAGCTTGATCGTGTTCGTGTGGCACTATCTAGATCCTCAAAAAGCTGGATTGATGGTTCCGGCTGTTGCTTCTGGTCTGATATGTGGAGAAGGTTTCTGGATTCTCCCTTCATCAATTCTTGCCTTGGCTAAGGGAAAAGAGCATGAATGA 2112 42.28 MKSLNLGSPYRWQNDCPQVKSFEFSSETIRYLNQIGLKSLVIQMRNTNIEEVQEIETAESIDEEKTRDEADDVKRIAPWTRQITIRGVIASIAIGIMYSVIVMKLNLTTGLVPNLNVSAALIAFVFIKTWTKLLEKAGIVSTPFTRQENSVIQTCAVACYSIAVGGGFGSYLFGLSRKTYEQAGVDTEGNAPGSTKELGIGWITAFLSVSSFVGLLALVPLRKIMILDYKLSYPSGTATAVLINGFHTPKGDKMAKKQVRGFMKYFSFSFLWALFQWFYSGGEKCGFSQFPTFGLKAWKDSFYFDFSLTYIGAGMICSHLVNLSLLLGAILSWGIMWPLMKGLKGEWYPGSLPESSMKSLNGYKVFVSISLILGDGLYHFLKILYFTGSSMYAKATNKKLKTFPDDSIQTFDDHRRNEVFLRDGIPIWVAITGYIFFSIVSIIVIPIMFPEVKWYYIVVAYTLAPSLSFCNAYGAGLTDMNMAYNYGKVALFVLAAMAGKNDGVVAGLVGCGLIKSIVSISSDLMHDFKTGHLTLTSPRAMLLSQAIGTAIGCIVAPLTFFMFYKAFDLANPDREYKVPYAIIYRNMAILGVEGFSALPQHCLQLCYGFFSFAIVANLLRDLTPEKFGKWIPLPMAMAVPFLVGAYFAIDMCVGSLIVFVWHYLDPQKAGLMVPAVASGLICGEGFWILPSSILALAKGKEHE 703
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
5 9612634 9616725 + CcPI632755_05g010820.1 Cco05g1082 178710

Annotation

Select Seq ID Length Analysis Description Start End IPR GO
Cco05g1082 703 PANTHER OLIGOPEPTIDE TRANSPORTER YGL114W-RELATED 57 700 IPR045035 GO:0005886(PANTHER)|GO:0010039(PANTHER)|GO:0016020(PANTHER)|GO:0035673(InterPro)|GO:0048316(PANTHER)|GO:0051980(PANTHER)
Cco05g1082 703 NCBIfam OPT family oligopeptide transporter 77 691 IPR004813 GO:0035673(InterPro)
Cco05g1082 703 Pfam OPT oligopeptide transporter protein 82 694 IPR004813 GO:0035673(InterPro)
       

Pathway

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Cco05g1082 - - - - 0.0
       

Dupl-types

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Cco05g1082 Cco-Chr5:9612634 Cco06g1285 Cco-Chr6:22998003 0.00E+00 dispersed
Cco05g1082 Cco-Chr5:9612634 Cco10g1459 Cco-Chr10:27703543 9.30E-190 transposed
       

Deco-Alignment

Select Vvi1 Blo1 Blo2 Bda1 Bda2 Bpe1 Bpe2 Bma1 Bma2 Cmo1 Cmo2 Cma1 Cma2 Car1 Car2 Sed1 Cpe1 Cpe2 Bhi1 Tan1 Cmetu1 Lac1 Hepe1 Mch1 Lcy1 Cla1 Cam1 Cec1 Cco1 Clacu1 Cmu1 Cre1 Cone1 Cone2 Cone3 Cone4 Lsi1 Csa1 Chy1 Cme1 Blo3 Blo4 Bda3 Bda4 Bpe3 Bpe4 Bma3 Bma4 Sed2 Cmo3 Cmo4 Cma3 Cma4 Car3 Car4 Cpe3 Cpe4 Bhi2 Tan2 Cmetu2 Lac2 Hepe2 Mch2 Lcy2 Cla2 Cam2 Cec2 Cco2 Clacu2 Cmu2 Cre2 Lsi2 Csa2 Chy2 Cme2
Vvi16g993 . . Bda05g00135 Bda07g01951 Bpe03g00226 . Bma10g01313 Bma14g02022 Cmo16g00033 Cmo18g01365 . . . . . . Cpe14g00022 Bhi01g01522 Tan01g0058 . . . . . . . . . . . . Cone1ag1007 Cone5ag0715 . . . . . Cme06g01171 Blo07g00323 Blo09g00008 . . . . . . . . . Cma16g00028 Cma18g01334 Car16g00025 Car18g01250 Cpe09g00013 . . . . . . . . Cla05g00989 Cam05g1080 Cec05g1088 Cco05g1082 Clacu05g1074 Cmu05g1024 Cre05g1098 . Csa03g01963 Chy06g01175 .
       

Syn-Orthogroups

Select Orthogroup Bda Bhi Blo Bma Bpe Cam Car Cco Cec Chy Cla Clacu Cma Cme Cmetu Cmo Cmu Cone Cpe Cre Csa HCH Hepe Lac Lcy Lsi Mch Sed Tan Vvi Total
OG0000598 4 9 3 3 2 3 3 3 3 4 3 3 3 4 4 3 3 3 3 3 4 2 2 2 2 4 2 4 10 3 104