Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Cco05g1087 ATGGATTCTGACCGCCATTTTCGTACCACAAGCAGCAACAGTACCAGTTCCACCGCCGCACCCTCTAGCGAGCTCTTCATTTGCTTCACTTCTCGCTTCTCTTCTTCTTCCTCCATGAAGATCTCCTCCAAGTCCATTCTCAGTCCCGGCCGTGCTCGTGAGCCCTCCCAAATCTCCCTCTCTACTTCCCTCAGCCGCCGTCTCAAATCCAGCGGTAGTCTCAAGGGCGGTCAAGCTTCCCCCATGTTTCCCACTGGCGGGAAGAAGCGAGGCTGTGCCTTTGACAATCCGGAACCCTCGTCGCCCAAGGTCACTTGCATTGGTCAGGTTCGGGTTAAGACGAAGAAGCAGGGGAAGAAAATGAGGGCTAGATCGCAGAAGCGAAGGGGCAATTCGGAGGCAAGCTTTCGGAGATCGGAGAGTGTTGTTCAATCGTCGCAGATGAATGGTAATGACCAGCAATTCTCGTCGCATCATAATCATCATCTTCTTCGTCAGAACAGTAACAACAATGGTGGAAACGGTTTCCAGCAGGAATGCTTGTCGCATCGGAACCAACGGTGGGTCCATTTGCCGTTTACGATTTGCGAGGCGCTTAGGGCTTTTGGTGCTGAACTCAACTGCTTCTTGCCGTGCCATTCGTCGTGTTCCAGCGATAGGGAGAATAATAAGGAATCCAAGCCGGCGGAGAGGTCGTCGGGGACCGAGAGTTCTTGCGGGACGGTGTTTGCGCGGTGGTTGGTGGCGGTTCAGGATGGAGACGGAAAGGGGAGGGAGATCGAGCTGGTGGTTGGAGACGAAGAAACTCGAACGGCGAAGGAAAAGGGAAGCCAGAGACGGCATGTTTTTGAGGGCTTAGATTTCAAAGACGAGAATGAAGTTGTGGAGGAAGAGCAATCCAGGATCAGCATTTGCATTCCGCCAAAGAATGCTTTATTGCTAATGAGGTGCAGATCTGATCCGGTGAAAATGGCGGAACTCGCGAAACGATTCTGTGAATCTCCTGCGCCAAAAGTGGATGAAGAAGACGAGGAAGAAGAAGATGAAGACAATGAAGCGAAAAATAGACAAAATGAAGTGAAAAAAGATGAATCTGTGTCACTGCCTGTATCTTCCACTGGGACTGTAAGTAAGGAAGAAGAAGAAGAAGAAGAAGAAGAAGAAGAAGAAAGGAAAGTGGAGCTAATTGTGAAGCTTACAAACGAGAAAGAAATGAATGAAGAATCTGTTTCTGATGCAGAAAAAGAAAAGGAAGAAGCTAATGCGGTTTTAGAGGAAGAAGAACGAGAAGAAGAAGATAATGGAGAAGAAACCACAGAAATGGCCACAGAAAACGAAATCGATGAGCAGAAACCGGACATTACTGTGGTAAATCAGCATAATCAAGAACAACCCGTGGAAGAAGATAAAATCGTTCAAGATAATCAGCAAGAAACAATGGCGATCCCAATTCAAATTCCGATTCAAACCCACTGTGAACCCGAAATGGCTCAAGATGCAGAGAAGCCGGAATCGGTCGAAGAAGACGAATCCAAGCTACCCCATGGAAGCGAACAAGACCAGAAAACAGAAGAAGACGAAAACCTGAGAGAAGAAGAAGAAGAAGAAGGCGAAGAAGGCGAAAATGGCGAAAACCTCAGTTTACCATCATTATCAGTAGAGACAGAACCAGTTTTAGACGAAACCGAAAGTGAAGTTTATTGGAATTGGGAAGAAGAAGAAGAAGAAGAAGAAGAGAAAGCGACGGAAGAAGGAATCGGACCCGACAAGCAAAACGACGAGGAATTGATGGGTCCAGAGGAGGACCAGTCAAAGGAGCGAGAAACTCCGCCGCCAGAGCCGGAGAGAAGAACACCAACAGAAACATCCGTTCTCCCAGATTGCTTGCTGTTAATGATGTACGAACCAAAGCTATCAATGGAGGTATCAAAGGAGACATGGGTTTGCAGCACAGACTTCATAAGGTGCGTTCCAACCAGGGAGAAGAAGCCGGCCGGCAGAGACCCACCGCCGCCTCCGCCGCCGAAGAAACGGGAAATAAAGCCGGTGGACACCACGCAGGCGGCAGTAGTACAGCCGGCGAGATGGTCGTGTTCGTTTCCAGCGGCGGCGGCTGCGGCGGCGATGATAGAACAGAAGCTAGTAAGGGCCAAGGGTTACGAGCCGTTTGTTCTTACTAGATGCAAGTCGGAGCCGATGAGATCGTCGGCTAAGCTGGCGCCAGACGCTTGCTTTTGGAAGGATCGCAAACTCGAGCCACACCGTCCGGCTACCTTCGGCGTCAGCGCGGCTGAAGTTGGATTTTGA 2307 49.67 MDSDRHFRTTSSNSTSSTAAPSSELFICFTSRFSSSSSMKISSKSILSPGRAREPSQISLSTSLSRRLKSSGSLKGGQASPMFPTGGKKRGCAFDNPEPSSPKVTCIGQVRVKTKKQGKKMRARSQKRRGNSEASFRRSESVVQSSQMNGNDQQFSSHHNHHLLRQNSNNNGGNGFQQECLSHRNQRWVHLPFTICEALRAFGAELNCFLPCHSSCSSDRENNKESKPAERSSGTESSCGTVFARWLVAVQDGDGKGREIELVVGDEETRTAKEKGSQRRHVFEGLDFKDENEVVEEEQSRISICIPPKNALLLMRCRSDPVKMAELAKRFCESPAPKVDEEDEEEEDEDNEAKNRQNEVKKDESVSLPVSSTGTVSKEEEEEEEEEEEERKVELIVKLTNEKEMNEESVSDAEKEKEEANAVLEEEEREEEDNGEETTEMATENEIDEQKPDITVVNQHNQEQPVEEDKIVQDNQQETMAIPIQIPIQTHCEPEMAQDAEKPESVEEDESKLPHGSEQDQKTEEDENLREEEEEEGEEGENGENLSLPSLSVETEPVLDETESEVYWNWEEEEEEEEEKATEEGIGPDKQNDEELMGPEEDQSKERETPPPEPERRTPTETSVLPDCLLLMMYEPKLSMEVSKETWVCSTDFIRCVPTREKKPAGRDPPPPPPPKKREIKPVDTTQAAVVQPARWSCSFPAAAAAAAMIEQKLVRAKGYEPFVLTRCKSEPMRSSAKLAPDACFWKDRKLEPHRPATFGVSAAEVGF 768
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
5 9676663 9678969 + CcPI632755_05g010870.1 Cco05g1087 178715

Annotation

Select Seq ID Length Analysis Description Start End IPR GO
Cco05g1087 768 MobiDBLite consensus disorder prediction 1 21 - -
Cco05g1087 768 MobiDBLite consensus disorder prediction 423 443 - -
Cco05g1087 768 MobiDBLite consensus disorder prediction 495 524 - -
Cco05g1087 768 MobiDBLite consensus disorder prediction 334 624 - -
Cco05g1087 768 PANTHER CHLOROPLAST PROTEIN HCF243-RELATED 21 748 - -
Cco05g1087 768 MobiDBLite consensus disorder prediction 525 542 - -
Cco05g1087 768 MobiDBLite consensus disorder prediction 391 422 - -
Cco05g1087 768 MobiDBLite consensus disorder prediction 35 178 - -
Cco05g1087 768 Coils Coil 376 437 - -
Cco05g1087 768 MobiDBLite consensus disorder prediction 136 178 - -
Cco05g1087 768 MobiDBLite consensus disorder prediction 660 683 - -
Cco05g1087 768 MobiDBLite consensus disorder prediction 215 237 - -
Cco05g1087 768 Coils Coil 515 535 - -
Cco05g1087 768 MobiDBLite consensus disorder prediction 583 615 - -
Cco05g1087 768 MobiDBLite consensus disorder prediction 338 352 - -
Cco05g1087 768 MobiDBLite consensus disorder prediction 558 582 - -
Cco05g1087 768 MobiDBLite consensus disorder prediction 35 78 - -
Cco05g1087 768 Coils Coil 339 359 - -
       

Pathway

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Cco05g1087 - - - - 0.0
       

Dupl-types

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Cco04g1084 Cco-Chr4:26308424 Cco05g1087 Cco-Chr5:9676663 6.40E-06 dispersed
Cco05g1087 Cco-Chr5:9676663 Cco10g2036 Cco-Chr10:33769895 6.70E-08 transposed
       

Deco-Alignment

Select Vvi1 Blo1 Blo2 Bda1 Bda2 Bpe1 Bpe2 Bma1 Bma2 Cmo1 Cmo2 Cma1 Cma2 Car1 Car2 Sed1 Cpe1 Cpe2 Bhi1 Tan1 Cmetu1 Lac1 Hepe1 Mch1 Lcy1 Cla1 Cam1 Cec1 Cco1 Clacu1 Cmu1 Cre1 Cone1 Cone2 Cone3 Cone4 Lsi1 Csa1 Chy1 Cme1 Blo3 Blo4 Bda3 Bda4 Bpe3 Bpe4 Bma3 Bma4 Sed2 Cmo3 Cmo4 Cma3 Cma4 Car3 Car4 Cpe3 Cpe4 Bhi2 Tan2 Cmetu2 Lac2 Hepe2 Mch2 Lcy2 Cla2 Cam2 Cec2 Cco2 Clacu2 Cmu2 Cre2 Lsi2 Csa2 Chy2 Cme2
Vvi19g160 . . . Bda09g00533 . . . . Cmo16g00440 Cmo04g00591 . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . Bda05g00777 . . Bpe01g00452 Bma07g01161 . . . . Cma04g00557 Cma16g00408 Car04g00527 . . Cpe01g00500 . . . . . . . Cla05g00994 Cam05g1085 Cec05g1093 Cco05g1087 Clacu05g1079 Cmu05g1029 Cre05g1103 . . Chy06g01170 .
       

Syn-Orthogroups

Select Orthogroup Bda Bhi Blo Bma Bpe Cam Car Cco Cec Chy Cla Clacu Cma Cme Cmetu Cmo Cmu Cone Cpe Cre Csa HCH Hepe Lac Lcy Lsi Mch Sed Tan Vvi Total
OG0008790 1 1 1 1 1 1 2 1 1 1 1 1 2 1 1 2 1 1 2 1 1 1 1 1 1 1 1 2 1 0 34