Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Cco05g1089 ATGGACCCAATCAATGCCTCTCTTCATCAATCTTCTCCTTCAAGCGACGAGCCGCTCATTGATGAAGCTTTGGATCTTTTAGAGCTTTTTTGGTTCTTTGATAATCCGCTTGTTAGGAGGAACCCCAGGATGTTGATCTCCCGTTCTGATCCTTGTCTTTCTAAAGTTGCCCACCAGGTGTTTGTTGAAAGTCCTCCTACTAATCTCTGCTCATCTGCTTTGGATGGGGGTGTTTCGCTGGGAAATGGTGGTGGTATACGTCGGAATCTGCTTCGGACGCCGTCTTTACCATCCCGTATGGATGGAGGCGAAGGAATTCGAGAGAAAGGAAATGGTTCTAGGCCATTGGTGGAGGAGCATGGTGTGCTTGTTGAAACTCCTGTTCATAGTGTTTGCTCATCTGCTTTAGATATGGATGTTTCGATTGGAAATGGTGGTGGTAAATGTAGGAATCTCCTCCGAACACCGTCGTTACCGTCCCCTTTGGACCGAGAGGAAGGAATTCAAGCGAAAGGAAATGATTCTAGGCCATTATCTGAGCATGGTGTGTTTGCAGAACGTCCTGCTGGTAATGCCTGCTTATCTACTTTGGATATGGATGTTTCGCTGGGAAATAGTGGCGGTAAACGTCGGAGTCTGCTCCGAATGCCATCATTACCATCCCGTGTGGAACGAGAACAAGGTATTCGAGACAAAGGGAATGGTTCCAAGCCATTAATAGAGCATGGTTTGCTTCAAAAACCAGCCAAGCCACCTTATGTAGAGAGGAAAGAAGAAGCAACTCGCAGCAAAGAAAGTGGCAGCACTCGGAGGAGCAAATCGGCGAGGAAACCACAGCATGGTAATCTGCTAAGAACACCATCTTTGCCACCATGTATAGGGAGGGAAAAGGAATTTGGAGAAAAGGAAGCTGCTGCTAGAATCAGAAACTCTATTCAACCAAACCTTTCTGAATTCTTTCCCACAAGACAAGAGATTCTTGACAAGAATTTCAGCCTCCCAATGTGTCGAATCCCAACAAGCAGTGACGAAATTTGGCACCAATTTCTCATCCAAATGAGGAAGAGAAGAAGCCAAAGTGAACTTGAATCAGAAGAACTGCAAGGTTTCAAGGACTTGGGATTCACATTTGACAAAAAAGATATAAACCCAACAGTGGTTGACATAATTCCAGGCTTGAGAGAGAAAAAGGAGGAAGAGTTTGAGAGTGAAAGAACTAGAAGGCCTTATCTTTCTGAGGCTTGGATGCTCCAAACTCATCTCCTTCCCCCAATTCCAAAATGGGATTCTAGAAAATCTGCAGAAGACATGAAACAACAAATCAAGTTTTGGGCTAGAGCTGTTGCTTCTAATGTGCACTAA 1362 44.86 MDPINASLHQSSPSSDEPLIDEALDLLELFWFFDNPLVRRNPRMLISRSDPCLSKVAHQVFVESPPTNLCSSALDGGVSLGNGGGIRRNLLRTPSLPSRMDGGEGIREKGNGSRPLVEEHGVLVETPVHSVCSSALDMDVSIGNGGGKCRNLLRTPSLPSPLDREEGIQAKGNDSRPLSEHGVFAERPAGNACLSTLDMDVSLGNSGGKRRSLLRMPSLPSRVEREQGIRDKGNGSKPLIEHGLLQKPAKPPYVERKEEATRSKESGSTRRSKSARKPQHGNLLRTPSLPPCIGREKEFGEKEAAARIRNSIQPNLSEFFPTRQEILDKNFSLPMCRIPTSSDEIWHQFLIQMRKRRSQSELESEELQGFKDLGFTFDKKDINPTVVDIIPGLREKKEEEFESERTRRPYLSEAWMLQTHLLPPIPKWDSRKSAEDMKQQIKFWARAVASNVH 453
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
5 9691871 9693879 - CcPI632755_05g010890.1 Cco05g1089 178717

Annotation

Select Seq ID Length Analysis Description Start End IPR GO
Cco05g1089 453 MobiDBLite consensus disorder prediction 251 272 - -
Cco05g1089 453 MobiDBLite consensus disorder prediction 89 113 - -
Cco05g1089 453 MobiDBLite consensus disorder prediction 204 294 - -
Cco05g1089 453 PANTHER OS06G0550800 PROTEIN 12 171 - -
       

Pathway

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Cco05g1089 - - - - 0.0
       

Dupl-types

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Cco05g1089 Cco-Chr5:9691871 Cco03g0699 Cco-Chr3:7184443 9.10E-13 transposed
       

Deco-Alignment

Select Vvi1 Blo1 Blo2 Bda1 Bda2 Bpe1 Bpe2 Bma1 Bma2 Cmo1 Cmo2 Cma1 Cma2 Car1 Car2 Sed1 Cpe1 Cpe2 Bhi1 Tan1 Cmetu1 Lac1 Hepe1 Mch1 Lcy1 Cla1 Cam1 Cec1 Cco1 Clacu1 Cmu1 Cre1 Cone1 Cone2 Cone3 Cone4 Lsi1 Csa1 Chy1 Cme1 Blo3 Blo4 Bda3 Bda4 Bpe3 Bpe4 Bma3 Bma4 Sed2 Cmo3 Cmo4 Cma3 Cma4 Car3 Car4 Cpe3 Cpe4 Bhi2 Tan2 Cmetu2 Lac2 Hepe2 Mch2 Lcy2 Cla2 Cam2 Cec2 Cco2 Clacu2 Cmu2 Cre2 Lsi2 Csa2 Chy2 Cme2
Vvi19g162 . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . Car16g00373 Cpe14g00343 . . . . . . . . Cla05g00996 Cam05g1087 Cec05g1095 Cco05g1089 Clacu05g1081 Cmu05g1031 Cre05g1105 . . Chy06g01168 .
       

Syn-Orthogroups

Select Orthogroup Bda Bhi Blo Bma Bpe Cam Car Cco Cec Chy Cla Clacu Cma Cme Cmetu Cmo Cmu Cone Cpe Cre Csa HCH Hepe Lac Lcy Lsi Mch Sed Tan Vvi Total
OG0012894 0 4 0 0 0 1 1 1 1 1 1 1 0 1 1 0 1 0 1 1 1 1 1 1 1 1 1 2 1 1 27