Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Cco05g1091 ATGCGATTGTCGTCGGAATCAGTTTCGTCGTCATTGAAGCAGAGTGGGAATCGGTCTGGGTCTAGGCTTAAGAAGAAGCACAAGAGGCTTGATGCCATATGCGAGAAAGAGTATAGTAGAAACCATGGCGATGTGAATGAGAATGTTAGTGGGTTGGGGACTGGGGAGGCTGACCTTGGGCTTCGACGGAGCAGCCGTGTTCGTCGGGCCCCAGTCTTGCTTGATGCTTCCCCTATGCCAAGGAAGAAGCGGCGGATGGTTCATGGGAATGGAACTTTGGGTGTTAAAACGAGTGCTAACACTCTGCCGCAGTTGAGAGATGATTTGAATGATGAGGCACAGGGGAATTGGAGATCGAGGTTGAGATCAAGGAACCGAAATTTGGGGATTAGAGTGGACAAAGGTGCTCGGGCGAGCAGGAAAAGGAAACTTTTTGATGAAATTATTAATGTGGAAGTAAGAAGTAGTGTAATGAGGATGGATTTGGATGAGGCAAAAGGAAAAATGGAATACGGGGAATCTATGGTTGGAAGGTCTAACAGATTGACGAGGAGGTTTGGAGTGACGAATGATCCAATTAAAACAGAAAAGGAGGTGAAGTCTCCTCAAATTAAGGATGATTATTGCAGGGAAGACATTTTGGAAATCAATATTGAAGATACAGAGGAGGAGGAAGAAGAAGAAGGGGAGGAAGAAGAAGAAGAAGGAGAGGAGGAGGAGGAGGAGGAGGAGGAGGAGGTGGTGGTGGAGGGCAAAGAAGCCACAACTGCTAACAATGAGAGAGGGGAGGGTGTTTTGCCTTTGGAAAATGAAATGGATGATGAAAATGTGAAGGCAGTGGATGATGCTGTTACTCAGGTTGTTGAAAAATTGGACAAAGAAACTTTGAGTTCTTTGCACGTAGACGAGGCTTGTAGTGGTGATCATAATGAAGAACCAGCCAATGTGGTGGAGAATGCAAACAATGGTGAGATACAGCTAGAAGAATTAACACAGCTAAATGAAGGTGTGAATGAAATTCATGATGTAGAAGCTACTGTAGTTTCAACAAATGAAGTGGTAGGTGGAAGGTCTTGCAACGAGAAAGCTGTTGATTTGGGCAAGTTTGCTGAAAAATCTAGGCAAGATGGTGTTGATTTAAATTTAAAGAAGTTTGCAGACAGTTCCACAGGTATGTTGGGTAAGGCTCGCATTAAAGAGGGCAGAAGGTGTGGATTGTGTGGAGGAGGAATTGATGGTAAACCTCCCAAGAAGTTGGTTCAAGATTCTGGTGAGAGTGAAAATGAAACATGTAGTGGCTCTTCAGCTTCAGAGGAACCAAATTATGACAAGTGGGATGGTTTTGGCGATGAACCTGGATGGCTTGGACGCCTCTTAGGTCCTATTAATGATCGTTATGGCATTGCTGGTATATGGGTCCATCAACACTGTGCAGTTTGGAGCCCCGAGGTTTATTTTGCTGGATTGGGATGCTTGAAAAATGTAAGGGCTGCTCTTTGCAGGGGAAGAGCATTAAAATGCACTCGGTGTGGGCGACCTGGAGCAACCATCGGATGTCGTGTTGATCGATGTCCAAAAACTTACCACTTGCCTTGTGCACGTGCTAATGGTTGCATATTTGATCACCGCAAATTTCTCATAGCTTGCACAGATCATCGCCACATCTTCCAACCTCACGGTAATCAATATTTAGCTCGTATAAAGAGATTAAAGGCCAAGAAAATGAAATTGGAAATAAAAAAGCAATCAAATGATGCTTGGCGAAGGGATATTGAGGCTGAAGAAAAGTGGCTGGAGAACTGTGGGGAAGATGAAGAGTTTTTGAAAAGAGAGAGTAAGAGACTTCATCGAGATTTGGTAAGAATTGCACCTGTATATATTGGTGGGTCAAACTCAGAAGGAGAGAACTTGTTTCATGGTTGGGAGTCAGTTGCTGGGCTTCAAGGTGTCATCCAATGTATGAAAGAAGTAGTATTCTTACCACTTTTGTATCCTGAGCTTTTTGATCGCTTTGGGATCACACCTCCTAGAGGTGTTCTTTTGCATGGATATCCTGGAACTGGTAAAACACATGTTGTTCGAGCACTGATTGGTTCTTGTGCTCGTGGAGATAAACGGATAGCATATTTTGCTCGTAAAGGAGCCGATTGCTTAGGGAAATATGTTGGTGATGCAGAACGTCAGTTAAGACTTCTATTTCAAGTTGCAGAGAAATGCCAACCTTCTATTATATTTTTTGATGAGATAGATGGATTGGCACCTTGTCGTACAAGGCAGCAAGATCAAACACATAATTCAGTTGTGTCTACATTGCTTGCTCTATTAGATGGTCTAAAATCTCGGGGGTCTGTTGTAGTTATTGGTGCCACAAACCGCCCTGAGGCAGTTGATCCAGCTTTAAGGAGGCCTGGGAGATTTGACCGGGAGATTTATTTTCCTTTGCCATCGGTTGAAGATAGGGCTGCTATTCTCTCCCTTCACACTCAAAGGTGGCCAAAGCCAGTTGATGGACCCTTGCTCCAGTGGATTGCTAGAAAAACTGCAGGCTTTGCTGGTGCTGATCTTCAGGCTCTCTGTACCCAAGCAGCCATGAGTGCTTTGAAAAGAAATTTTCCTCTTAAAGAAGTCCTGTCAGCTTCTGGGGAACAAGTTTCGAGAGATAACCACCCTCCTCTTCCGTCCATTTTAGTGGAGGAGCGAGATTGGTTAGAAACTTTATTATATTCTCCACCTCCATGCTCACGTAGAGAAGCAGGGATGGCTGCTAATGATGTGGCATCTTCTCCTCTTCCCTTCCATCTCATTCCTTGTCTGCTTCAACCACTGTCAACTTTACTTGTTTCCCTTTATCTCGATGAACGCATCTGCTTGCCAACTAATCTTTTCAAAGCTGCAACTTTAATTAAAAGTGTCATTGTTAGTACTTTGGACGGAAGGAAAATTGTCACTAGTTGCTGGTGGTCGCATGTTCATGATTTTGTTCAGGATGCTGATATTGCAAATGAGATAGAGGTAAAGCTGCAGGGTTCTGGAGTGTTACTTGAGGATTCTACTTTTGGTGGTTCTGGTGTTCTCAACAACACAAGCAGTGAAGGTTCCAAGTTTGAAAATGTAGGTCATCATGGTGGCCCACCCTCTACCATGGTAGAGCACACATCATTGACCTTGGGAAATAAGTCTGGCTTTCGAATTTTGATTGCTGGGAATCCCAGATCTGGACCAAGGCATCTTGCCTCTTGTCTTCTTCACTGTTATATTCAACATGTTGAAATTCGAAAGGTTGATATAGCTACAATTTCACAAGAAGGTCACGGTGATTTGGTGCAAGGCATATCACAAATATTGTTGAATTGCTCTAGCATGGGGTCGTGTCTGGTGTTCATGCCAAGAATTGACTTGTGGGCTATCGAGACACAAAGTCAAACGTTTGAGGAGTGTGATTTTTATCTGAATGAGGATCAGTATCTTGAGGATGGAAATATTGTCAAAGACGCCCACCTTGGTGGAAGGGAAAACCATGGTTATTCAGACCAAAGCAAATCAACTAAGAGGACTGGACTTCAAGACGATTCTCTGTCTAGTGCTTCATATGCTTGGAGTTCATTTGTTGAGCAAGTTGAATCGCTATCTACACCCTTGATGATTTTGGCCACATCAGAAGTTCCATTTTTGCTACTTCCACAAGAGATAAGGCAGTTCTTCAGGAACGACTTGTCAATTTGTCGGCCAACTACTTCGGAGCATTCGGTACCTAGGTTCTCTGTCCAGATTGATGGAGTTTTCGACCATGACATGGTAATCAATCATTCTGCTGCAGAATTATCAAGGGACATAGTGAAACTGCTTGTTCATTTGATTCACCAAAAGTCTCACACCAAAACATCCGCATGCACAAAGAACCAAGTTTCTGTAATCCAAGGTGAGAGTATTGCTGCAAATCAGCAAATAGATAAAGGAACTGCCAGCGAGCACAATGGAGAAAAGAAGTCTCCTGATGTGTCTTCTGTTAGAATTGCACCACTACCTTGCAGTAAAACCATGAGAGTGAAATCAAACTTGATTTCAGTAATATCTACTTTTGGCTATCAAATTCTGAGATACCCCCATTTCGCTGAGCTTTGTTGGGTGACATCAAAGTTGAAAGAAGGCCCCTATGCAGACGTTAGTGGACCCTGGAAGGGATGGCCATTCAATTCTTGTATTATTCGCCCGATGAGCACATTGGAGAAGGTAGCATCAAGCAGCTTGAGTAATGGAAAATCTAAAGAAATTTCGGGTTTGGTAAGAGGCTTGATTGCTGTTGGTTTATCGGCAATCAGAGGTGCCTACACATCCTTAAGGAAAGTCTCTTTTGATGTGCGATTGGTACTTGAACTCCTAGTTGAACAGATAAATGCAAAAATTAATTCCGGGAAAGACCAGTATCAATATTTTCGCCTTCTATCACAAGTTGCGTATCTGGAAGATGTAGTTAATAGCTGGGCCTTCACTCTGCAAAGCTTAGAACATGACTCTCGAACAACGGAAACGTCAAAGAATCACACTTCTGGTGGTAATGAGATTCAGTGTGAGAAAAACGAACCCATTATATCCAACAAAGGCTCTCTTACAAATGAAATTCCAGAAGTCAGTTGTCAGGAACCTGCTGTTGAGGAGGAAGTTGTAGCCATTGATTCCTTGGTAGATGGAGATTTGAATCATTCTAATTCCAAGGATACTACATTCGTATCAGGACATGGAGAGAGGAATTTTGGAATAAAAAATTCAGTCTCTAACGAGTCCCATGACAATGCTGCTGCTGTTGACCAATTAGCTGAAAATATTCCATTGAAGCACAATGAGACAACAGTAGTTGCACCGGACAATGATAGAAACGGCAAATCGGTTAAAGCACCATTAAATTTGGGAGCAGAATCAATAGTCAATTTGGAACATAATCATCTAAATTCAAGTGAGTTATGTGGTGATGAAATGCCGAGCTGCACAAAACCCTGCGGCAACAGTAATGAAGGTTGTTCCGCCTTAGAAAATGGTTGCAAACGTGACAATAGTAAGCCTGACTCAAATGACTGTGAAGTGAATGCTCACTCCTCTCCGAGCAGAACTGGCCTCTCTACCAACTCTGCACTAGTATGCTCTATTCGGTGCTGCACTGGTTGTTTAAACGTCCTCTACAGCGTGACAAAAACTATTATTCGCAAGGAATTGGGATCAAATCGAAATAATTGGACTGTAGAGGATGTTCATGATATTGTTGTGGCACTTTCAGTTGACCTTCTTGCAGCAGTAAGACGGGCATTTCTTGATGGAAACGACACTCGTGTATTTGACAATAGACAAATGGGAGGAAATGACAGGTTTAAATCTTCGGACTCGAGAAGTTGTGATTGCAAAAGTTCAAAAGACATGGTATTTAAGGGAGTGGAATGTATTTGTCACTATGAAAACGAAAGTTTGAGTGAAAAAGAAAAGGCCTCTCCTTATTCTGAAATGGGGATTGACCCCAACTTTATATTCAGAGATGGTGTATTGGTTAGTGTAGATCCCAAAAAGAATGCTTCGTTTCATTGTAAATTGGAGACTTTGTGCCTCTGTTCTCTTACAGAGTTGATAGTAATGGCAAATAAGCCTTTAAATTGA 5640 42.66 MRLSSESVSSSLKQSGNRSGSRLKKKHKRLDAICEKEYSRNHGDVNENVSGLGTGEADLGLRRSSRVRRAPVLLDASPMPRKKRRMVHGNGTLGVKTSANTLPQLRDDLNDEAQGNWRSRLRSRNRNLGIRVDKGARASRKRKLFDEIINVEVRSSVMRMDLDEAKGKMEYGESMVGRSNRLTRRFGVTNDPIKTEKEVKSPQIKDDYCREDILEINIEDTEEEEEEEGEEEEEEGEEEEEEEEEEVVVEGKEATTANNERGEGVLPLENEMDDENVKAVDDAVTQVVEKLDKETLSSLHVDEACSGDHNEEPANVVENANNGEIQLEELTQLNEGVNEIHDVEATVVSTNEVVGGRSCNEKAVDLGKFAEKSRQDGVDLNLKKFADSSTGMLGKARIKEGRRCGLCGGGIDGKPPKKLVQDSGESENETCSGSSASEEPNYDKWDGFGDEPGWLGRLLGPINDRYGIAGIWVHQHCAVWSPEVYFAGLGCLKNVRAALCRGRALKCTRCGRPGATIGCRVDRCPKTYHLPCARANGCIFDHRKFLIACTDHRHIFQPHGNQYLARIKRLKAKKMKLEIKKQSNDAWRRDIEAEEKWLENCGEDEEFLKRESKRLHRDLVRIAPVYIGGSNSEGENLFHGWESVAGLQGVIQCMKEVVFLPLLYPELFDRFGITPPRGVLLHGYPGTGKTHVVRALIGSCARGDKRIAYFARKGADCLGKYVGDAERQLRLLFQVAEKCQPSIIFFDEIDGLAPCRTRQQDQTHNSVVSTLLALLDGLKSRGSVVVIGATNRPEAVDPALRRPGRFDREIYFPLPSVEDRAAILSLHTQRWPKPVDGPLLQWIARKTAGFAGADLQALCTQAAMSALKRNFPLKEVLSASGEQVSRDNHPPLPSILVEERDWLETLLYSPPPCSRREAGMAANDVASSPLPFHLIPCLLQPLSTLLVSLYLDERICLPTNLFKAATLIKSVIVSTLDGRKIVTSCWWSHVHDFVQDADIANEIEVKLQGSGVLLEDSTFGGSGVLNNTSSEGSKFENVGHHGGPPSTMVEHTSLTLGNKSGFRILIAGNPRSGPRHLASCLLHCYIQHVEIRKVDIATISQEGHGDLVQGISQILLNCSSMGSCLVFMPRIDLWAIETQSQTFEECDFYLNEDQYLEDGNIVKDAHLGGRENHGYSDQSKSTKRTGLQDDSLSSASYAWSSFVEQVESLSTPLMILATSEVPFLLLPQEIRQFFRNDLSICRPTTSEHSVPRFSVQIDGVFDHDMVINHSAAELSRDIVKLLVHLIHQKSHTKTSACTKNQVSVIQGESIAANQQIDKGTASEHNGEKKSPDVSSVRIAPLPCSKTMRVKSNLISVISTFGYQILRYPHFAELCWVTSKLKEGPYADVSGPWKGWPFNSCIIRPMSTLEKVASSSLSNGKSKEISGLVRGLIAVGLSAIRGAYTSLRKVSFDVRLVLELLVEQINAKINSGKDQYQYFRLLSQVAYLEDVVNSWAFTLQSLEHDSRTTETSKNHTSGGNEIQCEKNEPIISNKGSLTNEIPEVSCQEPAVEEEVVAIDSLVDGDLNHSNSKDTTFVSGHGERNFGIKNSVSNESHDNAAAVDQLAENIPLKHNETTVVAPDNDRNGKSVKAPLNLGAESIVNLEHNHLNSSELCGDEMPSCTKPCGNSNEGCSALENGCKRDNSKPDSNDCEVNAHSSPSRTGLSTNSALVCSIRCCTGCLNVLYSVTKTIIRKELGSNRNNWTVEDVHDIVVALSVDLLAAVRRAFLDGNDTRVFDNRQMGGNDRFKSSDSRSCDCKSSKDMVFKGVECICHYENESLSEKEKASPYSEMGIDPNFIFRDGVLVSVDPKKNASFHCKLETLCLCSLTELIVMANKPLN 1879
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
5 9712076 9721298 - CcPI632755_05g010910.1 Cco05g1091 178719

Annotation

Select Seq ID Length Analysis Description Start End IPR GO
Cco05g1091 1879 MobiDBLite consensus disorder prediction 1167 1187 - -
Cco05g1091 1879 ProSitePatterns AAA-protein family signature. 784 802 IPR003960 GO:0005524(InterPro)|GO:0016887(InterPro)
Cco05g1091 1879 MobiDBLite consensus disorder prediction 425 439 - -
Cco05g1091 1879 FunFam ATPase family, AAA domain-containing 2 639 821 - -
Cco05g1091 1879 Gene3D Zinc/RING finger domain, C3HC4 (zinc finger) 455 555 IPR013083 -
Cco05g1091 1879 SMART AAA_5 675 816 IPR003593 GO:0016887(InterPro)
Cco05g1091 1879 PANTHER AAA DOMAIN-CONTAINING 37 1873 IPR045199 GO:0003682(PANTHER)|GO:0005634(PANTHER)|GO:0016887(PANTHER)|GO:0042393(PANTHER)|GO:0045944(PANTHER)
Cco05g1091 1879 Coils Coil 211 247 - -
Cco05g1091 1879 ProSiteProfiles Extended PHD (ePHD) domain profile. 433 553 IPR034732 -
Cco05g1091 1879 FunFam p-loop containing nucleoside triphosphate hydrolase superfamily protein 815 907 - -
Cco05g1091 1879 Pfam PHD-like zinc-binding domain 474 553 - -
Cco05g1091 1879 Gene3D - 815 874 - -
Cco05g1091 1879 MobiDBLite consensus disorder prediction 417 442 - -
Cco05g1091 1879 Pfam ATPase family associated with various cellular activities (AAA) 679 814 IPR003959 GO:0005524(InterPro)|GO:0016887(InterPro)
Cco05g1091 1879 Gene3D - 640 814 IPR027417 -
Cco05g1091 1879 FunFam P-loop containing nucleoside triphosphate hydrolases superfamily protein 399 555 - -
Cco05g1091 1879 MobiDBLite consensus disorder prediction 1 18 - -
Cco05g1091 1879 MobiDBLite consensus disorder prediction 217 249 - -
Cco05g1091 1879 SUPERFAMILY P-loop containing nucleoside triphosphate hydrolases 641 871 IPR027417 -
Cco05g1091 1879 MobiDBLite consensus disorder prediction 1 28 - -
Cco05g1091 1879 MobiDBLite consensus disorder prediction 217 254 - -
Cco05g1091 1879 Pfam AAA+ lid domain 840 872 IPR041569 -
       

Pathway

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Cco05g1091 - - - - 0.0
       

Dupl-types

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Cco05g1091 Cco-Chr5:9712076 Cco08g0045 Cco-Chr8:206615 8.00E-297 dispersed
Cco05g1091 Cco-Chr5:9712076 Cco04g1128 Cco-Chr4:26676622 4.50E-50 transposed
       

Deco-Alignment

Select Vvi1 Blo1 Blo2 Bda1 Bda2 Bpe1 Bpe2 Bma1 Bma2 Cmo1 Cmo2 Cma1 Cma2 Car1 Car2 Sed1 Cpe1 Cpe2 Bhi1 Tan1 Cmetu1 Lac1 Hepe1 Mch1 Lcy1 Cla1 Cam1 Cec1 Cco1 Clacu1 Cmu1 Cre1 Cone1 Cone2 Cone3 Cone4 Lsi1 Csa1 Chy1 Cme1 Blo3 Blo4 Bda3 Bda4 Bpe3 Bpe4 Bma3 Bma4 Sed2 Cmo3 Cmo4 Cma3 Cma4 Car3 Car4 Cpe3 Cpe4 Bhi2 Tan2 Cmetu2 Lac2 Hepe2 Mch2 Lcy2 Cla2 Cam2 Cec2 Cco2 Clacu2 Cmu2 Cre2 Lsi2 Csa2 Chy2 Cme2
Vvi19g170 . . . . Bpe09g00245 . . Bma13g00940 Cmo16g00439 . . . . . . . . . . . . . . . Cla10g00660 Cam10g0656 Cec10g0680 Cco10g0652 Clacu10g0679 Cmu10g1503 Cre10g0883 . . Cone14ag1047 Cone15ag1035 . . . . . Blo10g00749 . Bda12g00871 . . . . . . . . Cma16g00407 . Car16g00371 Cpe14g00341 . . . . . . . . Cla05g00998 Cam05g1089 Cec05g1097 Cco05g1091 Clacu05g1083 Cmu05g1033 Cre05g1108 . . Chy06g01166 .
       

Syn-Orthogroups

Select Orthogroup Bda Bhi Blo Bma Bpe Cam Car Cco Cec Chy Cla Clacu Cma Cme Cmetu Cmo Cmu Cone Cpe Cre Csa HCH Hepe Lac Lcy Lsi Mch Sed Tan Vvi Total
OG0002378 1 1 1 1 1 2 1 2 3 1 2 2 1 1 3 1 2 2 1 2 3 3 2 2 7 2 1 5 3 1 60