Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Cco05g1094 ATGAGATCTCTACTGGTCTCAGAGGTGATGGTGGTTAATCTTGTCAAACCGTCTTTCCTCAAATGGATATTATTGAGTTGCTTGCTTTCTTTCTCGCTGGCTCTGAAACAGACTAATAAAGTCTGTGATTCAAAAGATTTACTGGCATTGAGGGGCTTTGTGAATAGCCTTGCAAATAGTTCTGTTCTCTCTGTATGGTTAAATGAATCCAACTGCTGCAATTGGGATGGTGTGGATTGTGGATATGATGGCAACAGCTCGCGCACTAACAGAGTTACCAGGTTAGAACTGCCTAATATGAATCTGAAAGGCAAGATTTCACAATCACTTGGTGGTTTAGATCAGTTAATTTGGCTGAATCTATCATACAATCAGCTTGAAGGTGTATTGCCAACAGAACTCTCAAGCTTGAAGCAACTCCAGGTTTTGGATTTGAGTTACAATAAACTGTCAGGACCAGTCACCAATGCAACTTCAGGATTGAAATCTGTTCACGTTCTGAATATTTCAAGCAATTCATTCATTGGGGATTTTCCCCAGCTTGTGGGTTTTCAAAATCTTGTTGCCTTCAACATAAGTAACAATTCTTTCACGGGCCGGTTAGCTTCACAGATTTGCAATTCCTCCATCATGATTCAGGTTGTTGATATTTCACTGAACCGAATATCTGGAAATCTTCAAGGTTTGGACAATTGCAGCAAATCTCTCAAACATTTTCGTGCAGACAGTAACTTCCTTACTGGCCATCTGCCAGATTCGTTGTATTCATTATCATCCATGGAGTATTTCTCAATCCCTGGGAACAGTTTCTTTGGCCAATTAAGCATGGAACTGAGTAAGCTTTCTAGGCTTAAATCCTTTATAGTATTTGGAAACAAATTTTCTGGTGAACTTCCAAATGTGTTTGGTAATTTTTCAGAACTACAGGAGTTAGTTGCACACTCCAACTTGTTCTCTGGATTATTGCCTTCATCTCTGTCATTGTGCTCAAAGCTCAGAGTGTTTGATCTTAGAAATAATTCTTTAACTGGTACTATAGATCTCAATTTTTCTAGGCTACCAAATCTTCAAATGCTTGATCTAGCCTCGAATCACTTTTCTGGGCCCCTACCAAATTCTCTATCCGATTGCCATGAACTGAAAACTCTTAGCCTTGCCAAAAACAAGTTAACTGGTCAAATTCCTCGAAATTATGCAAAGCTTTCCTCTCTGTCCTTTCTATCTTTGTCAAACAACAGTATCATAGACTTGAGTGGTGCACTATCTATTTTACAAAATTGCAGAAATCTGACTGTTCTTATTCTTACAAAGAACTTTCGTAATGAGGTACTTCCACAGAGTGAAACTGTTTTCAACAACTTGATGCTTTTGGCATTTGGTAACTGTGGTCTGAGAGGACAAATTCCAGGTTGGTTAATAGGTTGCAAGAAATTAAGCATCCTCGACTTGTCTTGGAATCACTTAAATGGAAGTATCCCTGCTTGGATTGGTCAGCTGGAAAATTTGTTTTATTTGGACTTATCCAACAATTCTCTGACAGGAGAAATCCCAAAAAGCTTGACACAGATGAAAGCACTAATTTCCAGAAACGGCAGCTTGTCGGGTTCGACATCATCCGCTGGAATCCCCCTTTTTGTCAAACGAAATCAAAGTGCTACTGGTTTGCAATACAACCAAGCGTCAAGCTTTCCACCATCGATTTACTTGAGCTACAACAGAATTAATGGAACTATTTTGCCGGAAATTGGCAGATTAAAATGGCTGCATGTCTTGGATTTGAGTAGGAATAATATTACTGGGTCCATACCGAGCACCATATCAGAGATGGAGAACTTGGAAACATTAGATTTGTCGAATAATGATCTTTATGGACAAATTCCACCATCACTCAACAAGCTCACCTTCTTGTCAAAGTTTAGCGTGGCAAATAATCACTTGGAGGGACCAATTCCTAATGGAGGCCAATTCCTAAGCTTTCCCAGCTCCTGCTTTGATGGTAATACAGGACTTTGTGGGGAAATTGACAACCCTTGTCATTCTGTTGATGGGTTAGAAACAAAACCCGAAACCAACAATTACTCAAAGAGAAAAGTTAATAGAAGCATCATTCTTTGCCTTACAGTCGGTGCAGCTGCAGCAATCCTCCTGCTCCTTACAGTGGTTTTGCTCAAAATGTCCAGGAAAGATGTTGGAGATCGACGAAATAACAGGTTTGATGAGGAATTTGACAGGCCTGACAGGTTATCTGGAGCTCTTGGATCGTCAAAGTTGGTGCTCTTTCAGAATTCAGAATGCAAGGATCTTACAGTTGCAGAGTTGTTAAAAGCTACTTGCAATTTCAACCAAGCGAACATAATAGGCTGTGGTGGATTTGGCCTGGTTTACAAAGCCAGCCTTCCCAATGGTTCAAAAGCTGCAGTCAAGAGGCTTACAGGAGATTGTGGTCAGATGGAACGGGAATTCCAAGCTGAAGTAGAAGCTCTTTCTCGAGCACAGCATAAGAATCTTGTTTCTCTTCAAGGTTACTGCAAACATGGAAATGACAGGCTATTAATTTACTCCTACATGGAAAATGGAAGTTTGGACTACTGGCTTCACGAGGTTGTTGATGATGATTCAATACTAAAATGGGAAGCAAGACTCAAAATCGCACAGGGTGCAGCTCATGGATTGGCTTACTTGCATAAGGAATGTCAGCCCAACATAATCCACCGAGATGTAAAATCAAGCAACATACTTCTAGATGACAGATTTGAGGCTCATTTAGCTGATTTTGGTCTTTCAAGATTACTCCGGCCATATGACACTCATGTTACCACGGACTTGGTTGGGACTTTGGGTTATATTCCTCCTGAATACAGCCAGACATTAACTGCAACTTGCAGGGGTGATGTTTATAGTTTTGGTGTTGTTCTTCTTGAGCTTCTTACTGGTCGGAGGCCTGTAGAGGTATGCAAAGGTAAAGCCTGCAGGGATCTGGTGTCTTGGGTGATTCAAAAAAAATCAGAGAAGAGAGAAGAGGAGATTATTGATCCTGCAATTTGGGACACTAATAGCAAAAAACAGATTTTAGAGGTTCTTGGTATTACTTGTAAATGCATAGACCAAGATCCAAGGAAGAGACCTTCGATTGAAGAAGTTTCTTCATGGCTAGATGGTGTTACGTTGTAG 3171 40.4 MRSLLVSEVMVVNLVKPSFLKWILLSCLLSFSLALKQTNKVCDSKDLLALRGFVNSLANSSVLSVWLNESNCCNWDGVDCGYDGNSSRTNRVTRLELPNMNLKGKISQSLGGLDQLIWLNLSYNQLEGVLPTELSSLKQLQVLDLSYNKLSGPVTNATSGLKSVHVLNISSNSFIGDFPQLVGFQNLVAFNISNNSFTGRLASQICNSSIMIQVVDISLNRISGNLQGLDNCSKSLKHFRADSNFLTGHLPDSLYSLSSMEYFSIPGNSFFGQLSMELSKLSRLKSFIVFGNKFSGELPNVFGNFSELQELVAHSNLFSGLLPSSLSLCSKLRVFDLRNNSLTGTIDLNFSRLPNLQMLDLASNHFSGPLPNSLSDCHELKTLSLAKNKLTGQIPRNYAKLSSLSFLSLSNNSIIDLSGALSILQNCRNLTVLILTKNFRNEVLPQSETVFNNLMLLAFGNCGLRGQIPGWLIGCKKLSILDLSWNHLNGSIPAWIGQLENLFYLDLSNNSLTGEIPKSLTQMKALISRNGSLSGSTSSAGIPLFVKRNQSATGLQYNQASSFPPSIYLSYNRINGTILPEIGRLKWLHVLDLSRNNITGSIPSTISEMENLETLDLSNNDLYGQIPPSLNKLTFLSKFSVANNHLEGPIPNGGQFLSFPSSCFDGNTGLCGEIDNPCHSVDGLETKPETNNYSKRKVNRSIILCLTVGAAAAILLLLTVVLLKMSRKDVGDRRNNRFDEEFDRPDRLSGALGSSKLVLFQNSECKDLTVAELLKATCNFNQANIIGCGGFGLVYKASLPNGSKAAVKRLTGDCGQMEREFQAEVEALSRAQHKNLVSLQGYCKHGNDRLLIYSYMENGSLDYWLHEVVDDDSILKWEARLKIAQGAAHGLAYLHKECQPNIIHRDVKSSNILLDDRFEAHLADFGLSRLLRPYDTHVTTDLVGTLGYIPPEYSQTLTATCRGDVYSFGVVLLELLTGRRPVEVCKGKACRDLVSWVIQKKSEKREEEIIDPAIWDTNSKKQILEVLGITCKCIDQDPRKRPSIEEVSSWLDGVTL 1056
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
5 9744968 9748138 - CcPI632755_05g010940.1 Cco05g1094 178722
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Cco05g1094 1056 SMART LRR_typ_2 137 160 IPR003591 -
Cco05g1094 1056 SMART LRR_typ_2 499 523 IPR003591 -
Cco05g1094 1056 SMART LRR_typ_2 353 377 IPR003591 -
Cco05g1094 1056 SMART LRR_typ_2 401 424 IPR003591 -
Cco05g1094 1056 SMART LRR_typ_2 609 633 IPR003591 -
Cco05g1094 1056 SMART LRR_typ_2 113 136 IPR003591 -
Cco05g1094 1056 Pfam Leucine Rich Repeat 477 499 IPR001611 GO:0005515(InterPro)
Cco05g1094 1056 Pfam Leucine Rich Repeat 501 522 IPR001611 GO:0005515(InterPro)
Cco05g1094 1056 SUPERFAMILY Protein kinase-like (PK-like) 761 1051 IPR011009 -
Cco05g1094 1056 FunFam Tyrosine-sulfated glycopeptide receptor 1 350 683 - -
Cco05g1094 1056 Gene3D Phosphorylase Kinase; domain 1 749 855 - -
Cco05g1094 1056 SMART serkin_6 780 1051 IPR000719 GO:0004672(InterPro)|GO:0005524(InterPro)|GO:0006468(InterPro)
Cco05g1094 1056 ProSiteProfiles Protein kinase domain profile. 780 1051 IPR000719 GO:0004672(InterPro)|GO:0005524(InterPro)|GO:0006468(InterPro)
Cco05g1094 1056 FunFam Leucine-rich repeat receptor-like protein kinase 856 1056 - -
Cco05g1094 1056 Pfam Leucine rich repeat 567 622 IPR001611 GO:0005515(InterPro)
Cco05g1094 1056 Pfam Leucine rich repeat 307 366 IPR001611 GO:0005515(InterPro)
Cco05g1094 1056 Pfam Leucine rich repeat 91 150 IPR001611 GO:0005515(InterPro)
Cco05g1094 1056 Pfam Leucine rich repeat N-terminal domain 44 80 IPR013210 -
Cco05g1094 1056 Gene3D Ribonuclease Inhibitor 401 530 IPR032675 -
Cco05g1094 1056 SUPERFAMILY L domain-like 42 321 - -
Cco05g1094 1056 ProSiteProfiles Leucine-rich repeat profile. 403 425 IPR001611 GO:0005515(InterPro)
Cco05g1094 1056 Pfam Protein kinase domain 781 1047 IPR000719 GO:0004672(InterPro)|GO:0005524(InterPro)|GO:0006468(InterPro)
Cco05g1094 1056 FunFam LRR receptor-like serine/threonine-protein kinase ERECTA 251 346 - -
Cco05g1094 1056 ProSiteProfiles Leucine-rich repeat profile. 611 634 IPR001611 GO:0005515(InterPro)
Cco05g1094 1056 ProSitePatterns Protein kinases ATP-binding region signature. 786 808 IPR017441 GO:0005524(InterPro)
Cco05g1094 1056 ProSitePatterns Serine/Threonine protein kinases active-site signature. 902 914 IPR008271 GO:0004672(InterPro)|GO:0006468(InterPro)
Cco05g1094 1056 FunFam Phytosulfokine receptor 1 743 855 - -
Cco05g1094 1056 PRINTS Leucine-rich repeat signature 609 622 - -
Cco05g1094 1056 PRINTS Leucine-rich repeat signature 502 515 - -
Cco05g1094 1056 FunFam Nuclear pore complex protein NUP107 43 184 - -
Cco05g1094 1056 Gene3D Ribonuclease Inhibitor 567 678 IPR032675 -
Cco05g1094 1056 PANTHER LRR RECEPTOR-LIKE SERINE/THREONINE-PROTEIN KINASE-RELATED 29 1054 IPR050647 -
Cco05g1094 1056 SUPERFAMILY L domain-like 269 651 - -
Cco05g1094 1056 Gene3D Transferase(Phosphotransferase) domain 1 856 1055 - -
Cco05g1094 1056 Gene3D Ribonuclease Inhibitor 161 400 IPR032675 -
Cco05g1094 1056 Gene3D Ribonuclease Inhibitor 43 160 IPR032675 -
Cco05g1094 1056 CDD STKc_IRAK 786 1047 - -
       

Duplication type information

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Cco05g1094 Cco-Chr5:9744968 Cco11g0107 Cco-Chr11:1152940 3.40E-143 dispersed
Cco05g1094 Cco-Chr5:9744968 Cco05g0956 Cco-Chr5:8373359 4.90E-78 transposed
       

Transcription factors information

Select Gene Hmm_acc Hmm_name Score E-value Regulatory Factors Family
86845 PF00069 Pkinase 5.50E-44 CL0016 Cco PK
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Cco05g1094 K27626 - rcu:8265318 1378.62