Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Cco05g1097 ATGGAAGATTGTAGAGAGCCATTGTTGGAGCTTGGTGATTTTGAAGCAAATGAAGGGAGATGGTGGAAGAGAGTGTTTGAGATGGAGGAAGTAAAGCTTCAACTTCTATTTTCCCTTCCATTGATTCTTACAAATGTATTCTATTACATGATTACTTTGGTCTCTGTTATGTTTGCTGGTCATCTTGGTGAACTTGAGCTTGCTGCTGCCACTCTTGCAAATACTTTGGCTAGTGTCACTGGCTTTGCTTTCATGACAGGACTGAGCGGAGCGCTTGAAACACTTTGCGGGCAAGCGTTTGGTAGGAAGTTTTATGGGAAGATGGGGTTGTATCTTCAAGGTTCTTGCATCTCATCATTCTTTTGTTCCATCATTGTATCAGTTCTGTGGATTTACACAGAACAGATTCTAGTCTTGCTCCATCAAGAACCAGAGATTTCAAGGATATCTGCAGTGTATATGAAGTTTCTCATCCCAGGATTATTTGCATATGGCTTACTACAGAACATCCTGAGGTTTCTCCAAACACAATCTGTTGTCATGCCTTTGGTTTTCTTCTCTGCCATCCCAATGTTCATCCACATACCTATTGCATATGGTCTCGTTCATGGGACACATCTTGGTTTCAATGGAGCTCCATTGGCTGCTTCAATCTCATTATGGATGTCATGCCTGATTTTGGCTATTTATGTACTTAAAGCAAACAAGTTTGAGAAATCTTGGAAAGGCTTCTCATTAGAAGCTTTTAGCTACAGTCTTTCAAGCTTAAAACTAGCTATTCCATCAGCAGCAATGGTGTGTTTGGAGTATTGGGCGGTTGAGGTTATGGTTTTCTTAGCCGGGTTGATGCCGAACCCAGAAACAAGTACTTCACTGATAGCAATGTGTGACAACACACAAACCATTGCCTACATGATCACTTGTGGACTCAGTGCTGCAGCAAGCACAAGGGTCTCAAATGAATTGGGAGCAGGCAATTTTGACAAAGCCAAAACTGCCATGTTTGCAACTCTCAAGCTTTCTGTCCTCCTTCCTCTGCTAGTTGTTTTGGCACTTGCATTTGGACATAACACCTGGGCTAGCTTCTTCATCAACAGCATTACAATTATGGATGAGTTTTCTTCCATGGTCCCATTTCTCGCTATCTCGATAACGCTCGACTCTGTTCAAGGCGCCATATCAGGGGTGGCTAGAGGCTATGGTTGGCAGCACTTGGCTGTATACATAAACTTGTCCACATTCTACTTTGTCGGTGTAACGATATCGATCCTTCTCGGGTTTAAGCTTAGATTATATGCTAAGGGTTTATGGATCGGGTACGTGTGCGGTCTCTCGTCACAAACCGGTTGTCTTCTTTTGGTCGCTTTGTCTGCAAAATGGATTAAAATGAATCAATCTGATTATGAAGTAAAAGGCCAGCCAAGGTTTATCCGTTCTATATCCTCCTCTGCTCTTCGTTCAATCGCTCAAATGGCAATGGCTTCAGTTTTGGCCCTCAATGGAGTGAAATTGGCTACGACTTCTCAAGCTTATGTGGAAAGCAAGGCTGCAATCGACACCAAGGCTCTGTTATCGGAGCCCTCCCACCAATTCTACGGCCTTAGATGGGTCTCCGGCACCGGCGGCAGCATTGCGATCAAGGTTCACTACCACTCCATTCCCAAGAGACAAAAGCTAACTGCTATGTCGCCTTCTGGTGTTAAGGAGAGAATGGTACGTGAGGACACCTGCATGTTATCTTATGGTGGGTCGATCTTATATTCACCACTTCCAAAACCATTTTTCCATAACCTCCCAAACTGTTTTGATAGTGGACGTCTTTTTATGAAGATGCGCAATGCTGGAGCTGCTATCCACAGTCGTGGTATGGAATCGTATCTTGTAACACAAAGGAACCATCATCAGGGTCGGATTAGGAGTATCAAAGGAATTTCGAGCAACATTTCTGTGAAGGCTGGGGATCAAGGTTTAGAAAATAAAAATGAACCATTGCCACGTTGCATAGTTCTTGATATCGAAGGGACTACTACTCCAATATCTTTTGTTACTGACGTCCTCTTTCCATATGCTCGGGATAATGTTGGAAAGCATTTGATTTTAACTTATGAAACTGCAGAAACTCAAGATGACATTAAGTTGTTGCGTTCACAAGTTGAAGAAGACTTGGAAAATGGAGTTGCTGGAGCTGTGCCTATTCCTCCTGATAATGCTGGAAAAGAGGAAGTCATTGTAGCATTGGTTGCTAATGTTGAAGCAATGATAAAAGCTGACCGCAAGATAACTGCCTTGAAACAATTGCAAGGTCACATATGGAGAACAGGATTTTCAGGCAATGAATTGGAGGGAGTAGTTTTTGATGACGTCCCAGAGGCTCTCGAGAGATGGCATGCTTCGGGCATTAAGGTCTACATATACTCGAGTGGCAGCAGGTTGGCACAAAGGCTTATATTTGGAAAGACTAATTATGGTGATCTAAGAAAATACCTGTCAGGATTCTTTGACACTGCTGTGGGGAACAAAAGAGAAATAAGCAGTTATGTTGAGATTTCAGAGTCTATTGGAGTTGATACACCATCAGAGATATTGTTCATCACAGATGTCTGTCAGGAAGCTGTAGCAGCAAAAGCAGCAGGGCTGCAGGTGGCAATCTCAATCCGACCAGGAAACGGTCCACTGCCTGATAATCACGGGTTTCAGACAATCAGTTCCTTCTCAGAAATCTGA 2724 43.14 MEDCREPLLELGDFEANEGRWWKRVFEMEEVKLQLLFSLPLILTNVFYYMITLVSVMFAGHLGELELAAATLANTLASVTGFAFMTGLSGALETLCGQAFGRKFYGKMGLYLQGSCISSFFCSIIVSVLWIYTEQILVLLHQEPEISRISAVYMKFLIPGLFAYGLLQNILRFLQTQSVVMPLVFFSAIPMFIHIPIAYGLVHGTHLGFNGAPLAASISLWMSCLILAIYVLKANKFEKSWKGFSLEAFSYSLSSLKLAIPSAAMVCLEYWAVEVMVFLAGLMPNPETSTSLIAMCDNTQTIAYMITCGLSAAASTRVSNELGAGNFDKAKTAMFATLKLSVLLPLLVVLALAFGHNTWASFFINSITIMDEFSSMVPFLAISITLDSVQGAISGVARGYGWQHLAVYINLSTFYFVGVTISILLGFKLRLYAKGLWIGYVCGLSSQTGCLLLVALSAKWIKMNQSDYEVKGQPRFIRSISSSALRSIAQMAMASVLALNGVKLATTSQAYVESKAAIDTKALLSEPSHQFYGLRWVSGTGGSIAIKVHYHSIPKRQKLTAMSPSGVKERMVREDTCMLSYGGSILYSPLPKPFFHNLPNCFDSGRLFMKMRNAGAAIHSRGMESYLVTQRNHHQGRIRSIKGISSNISVKAGDQGLENKNEPLPRCIVLDIEGTTTPISFVTDVLFPYARDNVGKHLILTYETAETQDDIKLLRSQVEEDLENGVAGAVPIPPDNAGKEEVIVALVANVEAMIKADRKITALKQLQGHIWRTGFSGNELEGVVFDDVPEALERWHASGIKVYIYSSGSRLAQRLIFGKTNYGDLRKYLSGFFDTAVGNKREISSYVEISESIGVDTPSEILFITDVCQEAVAAKAAGLQVAISIRPGNGPLPDNHGFQTISSFSEI 907
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
5 9775169 9787046 + CcPI632755_05g010970.1 Cco05g1097 178725

Annotation

Select Seq ID Length Analysis Description Start End IPR GO
Cco05g1097 907 SFLD Haloacid Dehalogenase 666 906 - -
Cco05g1097 907 Gene3D - 776 907 IPR023214 -
Cco05g1097 907 SFLD enolase-phosphatase 666 906 IPR023943 GO:0000287(InterPro)|GO:0019509(InterPro)|GO:0043874(InterPro)
Cco05g1097 907 NCBIfam acireductone synthase 666 906 IPR023943 GO:0000287(InterPro)|GO:0019509(InterPro)|GO:0043874(InterPro)
Cco05g1097 907 Gene3D - 518 664 IPR036409 -
Cco05g1097 907 Pfam haloacid dehalogenase-like hydrolase 666 878 - -
Cco05g1097 907 CDD HAD_EP 667 888 IPR023943 GO:0000287(InterPro)|GO:0019509(InterPro)|GO:0043874(InterPro)
Cco05g1097 907 FunFam Probable bifunctional methylthioribulose-1-phosphate dehydratase/enolase-phosphatase E1 775 907 - -
Cco05g1097 907 Pfam MatE 261 421 IPR002528 GO:0015297(InterPro)|GO:0016020(InterPro)|GO:0042910(InterPro)|GO:0055085(InterPro)
Cco05g1097 907 Pfam MatE 40 199 IPR002528 GO:0015297(InterPro)|GO:0016020(InterPro)|GO:0042910(InterPro)|GO:0055085(InterPro)
Cco05g1097 907 PANTHER MULTIDRUG RESISTANCE PROTEIN 28 462 - GO:0016020(PANTHER)|GO:0022857(PANTHER)
Cco05g1097 907 Gene3D - 679 775 - -
Cco05g1097 907 FunFam Probable bifunctional methylthioribulose-1-phosphate dehydratase/enolase-phosphatase E1 679 775 - -
Cco05g1097 907 CDD MATE_eukaryotic 30 463 IPR045069 GO:0042910(InterPro)|GO:1990961(InterPro)
Cco05g1097 907 NCBIfam MATE family efflux transporter 40 437 IPR002528 GO:0015297(InterPro)|GO:0016020(InterPro)|GO:0042910(InterPro)|GO:0055085(InterPro)
Cco05g1097 907 SUPERFAMILY HAD-like 666 907 IPR036412 -
       

Pathway

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Cco05g1097 K03327 - - csv:101221712 688.723
       

Dupl-types

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Cco05g1097 Cco-Chr5:9775169 Cco11g1847 Cco-Chr11:31150363 3.70E-159 dispersed
Cco05g1097 Cco-Chr5:9775169 Cco05g2494 Cco-Chr5:33323675 8.00E-85 transposed
       

Deco-Alignment

Select Vvi1 Blo1 Blo2 Bda1 Bda2 Bpe1 Bpe2 Bma1 Bma2 Cmo1 Cmo2 Cma1 Cma2 Car1 Car2 Sed1 Cpe1 Cpe2 Bhi1 Tan1 Cmetu1 Lac1 Hepe1 Mch1 Lcy1 Cla1 Cam1 Cec1 Cco1 Clacu1 Cmu1 Cre1 Cone1 Cone2 Cone3 Cone4 Lsi1 Csa1 Chy1 Cme1 Blo3 Blo4 Bda3 Bda4 Bpe3 Bpe4 Bma3 Bma4 Sed2 Cmo3 Cmo4 Cma3 Cma4 Car3 Car4 Cpe3 Cpe4 Bhi2 Tan2 Cmetu2 Lac2 Hepe2 Mch2 Lcy2 Cla2 Cam2 Cec2 Cco2 Clacu2 Cmu2 Cre2 Lsi2 Csa2 Chy2 Cme2
Vvi19g196 . . . . Bpe09g00238 . . Bma13g00945 Cmo16g00434 . . . . . . Cpe06g00682 . . . . . . . . . . . . . . . . Cone9ag0179 . . Lsi04g02064 Csa04g02334 Chy07g00066 . . Blo10g00758 . . . . . . . . . . Cma16g00400 . Car16g00366 . . . . . . . . . Cla05g01005 Cam05g1094 Cec05g1104 Cco05g1097 Clacu05g1090 Cmu05g1041 Cre05g1114 . . . .
       

Syn-Orthogroups

Select Orthogroup Bda Bhi Blo Bma Bpe Cam Car Cco Cec Chy Cla Clacu Cma Cme Cmetu Cmo Cmu Cone Cpe Cre Csa HCH Hepe Lac Lcy Lsi Mch Sed Tan Vvi Total
OG0001632 1 2 4 2 2 0 2 2 0 2 1 2 2 2 2 2 1 2 2 1 1 3 4 3 4 2 2 4 8 2 67